Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005229

Physical Location & Seq

Genomic Coordinates Reverse (-)

64246464 .. 64248478

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG392500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCTCGTCTCGGCGCTGGTGACGTCACTGGCCATAAACTCCGGCCTGTGCGTTCTCTTCTTCACGCTCTACTCCATCCTGAGAAAACAGCCGAGCAACTCCGAGGTGTACATACCGCGAGTTTTGGCCGAAGGCGGGTACAAGAAGAGTAGCCATTTCAATCTAGAGAGGCTGATTCCTTCTCCCGATTGGCTCCGAAGGGCCTGGAAGCTCACCGAGGACGATTTGCTCGCGGCGTCGGGTTTGGACGCCGTGGTTTTTATGCGGCTCATCAATTTCAGCCTGAGAGTGTTTCTGTTCGCCGGAGTTATTGGCGTTTTCGTTCTGCTTCCGGTGAACTGCTCCGGCGATGCGCTCGAGTATGTTGACTTCGCCGATCTGTCTAATAACTCATTGGATGTGTTCAGTATTTCAAATGTTGGCAGCGGCTCAAGCTTGTTGTGGGTTCACTTTTCGGCGGTGTACCTTGTCACCATCTTTATCTGCTGTCTACTCTATTATGAATATAGATATATCTGTGAAAAGAGGACCAGTTATTTTCTTGCATCCAAGCCTCAACCACATCAGTTCACCATCCTAGTTCGCAGCATTCCTGTTCCTGTAGGGAGCAGCGTCAGTGATAGTGTTGAGAGATTCTTTAGCGAGTATCATCCTTCTACATATCTGTCACATAGTGTTGTTCGTCGAACAAACAAACTTCAGAATCTCATTAGTGATGCAAAAAAATTGTATAGCAGACTCGTTTACTTGAAGTCAGATCCCAATAAGCAAAAGTATAAACATTCCGGTACTTTTGGGTTGTTCGGACCCAAGGTTAATCTACAAGATCATTACGAAAAGACGCTTGAGGATATAGAGGAGAATGTGAGATTGGAGCAATCAGAGGTTTCGTTAGCAGGAGAAGAAGTTCGAGCTGCTTTTGTGTCCTTCAAGTCTCGGTATGGTGCCGCAATTGCTTTCCACTTGCAACAATCGACCAATCCTACACGATGGGTCACAGAGCAAGCTCCTGAACCACATGATGTTTACTGGCCCTTCTTTTCCTCATCATTCATTCGAAGATGGATATCTAAGCTGGTGGTTATAATTGCTTGCATTCTTCTTACAATCATATTCCTCATTCCTGTTGTACTTGTTCAAGGTCTCACTAATTTAAGCCAGTTGGAAATCTACTTTCCCTTCCTCACGAGCATTCTAACCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

401

Amino Acids

45.56

Weight (kDa)

8.4

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RSN1_TM	PF13967	5 - 168	8.7e-38	Late exocytosis, associated with Golgi transport
PHM7_cyt	PF14703	189 - 345	9e-38	Cytosolic domain of 10TM putative phosphate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69450 AT1G69450 AT1G69450
fragaria_vesca	FvH4_4g30740 FvH4_4g30740
malus_domestica	MD13G1068300.v1.1 MD16G1067100.v1.1
prunus_persica	Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1
pyrus_communis	pycom13g06010 pycom16g05850
rosa_chinensis	RchiOBHm_Chr4g0439131
rosa_laevigata	RLG00000006295
rosa_multiflora	Rmu_sc0002236.1_g000001 Rmu_sc0005346.1_g000005 Rmu_sc0027506.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380120
rosa_rugosa	Rorug04G0315900 Rorug04G0315900
rosa_samantha	Rh4AG366800 Rh4BG378300 Rh4CG392400 Rh4CG392500 Rh4DG372900
rosa_wichuraiana	Rw0G007500 Rw0G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1085
AatII	GACGTC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	944
AccI	GTMKAC	1 cut(s)	490
AccII	CGCG	2 cut(s)	118, 233
AciI	CCGC	7 cut(s)	116, 135, 233, 265, 426, 458, 948
AclWI	GGATC	1 cut(s)	752
AcoI	YGGCCR	2 cut(s)	30, 126
AcuI	CTGAAG	1 cut(s)	683
AcyI	GRCGYC	3 cut(s)	23, 236, 249
AdeI	CACNNNGTG	1 cut(s)	674
AfaI	GTAC	5 cut(s)	110, 140, 464, 790, 1131
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	5 cut(s)	160, 414, 751, 931, 1139
AjnI	CCWGG	1 cut(s)	203
AjuI	GAANNNNNNNTTGG	2 cut(s)	854, 886
AloI	GAACNNNNNNTCC	2 cut(s)	891, 923
AluBI	AGCT	5 cut(s)	211, 435, 914, 1007, 1075
AluI	AGCT	5 cut(s)	211, 435, 914, 1007, 1075
Alw26I	GTCTC	3 cut(s)	13, 939, 1148
AlwI	GGATC	1 cut(s)	752
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	5 cut(s)	30, 43, 126, 201, 1031
ApeKI	GCWGC	4 cut(s)	423, 585, 609, 914
Asp700I	GAANNNNTTC	1 cut(s)	906
AspLEI	GCGC	2 cut(s)	16, 355
AspS9I	GGNCC	4 cut(s)	201, 528, 806, 1032
AsuHPI	GGTGA	5 cut(s)	31, 205, 346, 463, 562
AsuII	TTCGAA	1 cut(s)	1057
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	2 cut(s)	528, 806
BalI	TGGCCA	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	944
BarI	GAAGNNNNNNTAC	2 cut(s)	353, 385
BauI	CACGAG	1 cut(s)	1186
BbvI	GCAGC	4 cut(s)	435, 597, 621, 901
BccI	CCATC	5 cut(s)	83, 482, 581, 984, 1056
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	205
BcoDI	GTCTC	3 cut(s)	13, 939, 1148
BfaI	CTAG	2 cut(s)	164, 578
BfmI	CTRYAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	17
BisI	GCNGC	8 cut(s)	234, 266, 424, 427, 586, 610, 915, 948
BlsI	GCNGC	8 cut(s)	235, 267, 425, 428, 587, 611, 916, 949
Bme1390I	CCNGG	1 cut(s)	205
Bme18I	GGWCC	2 cut(s)	528, 806
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	4 cut(s)	201, 528, 806, 1032
BmiI	GGNNCC	3 cut(s)	194, 808, 946
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	3 cut(s)	340, 554, 706
Bpu14I	TTCGAA	1 cut(s)	1057
BpuEI	CTTGAG	2 cut(s)	415, 866
BsaBI	GATNNNNATC	1 cut(s)	1066
BsaHI	GRCGYC	3 cut(s)	23, 236, 249
BsaI	GGTCTC	1 cut(s)	1148
BsaJI	CCNNGG	4 cut(s)	102, 216, 252, 810
BsaWI	WCCGGW	2 cut(s)	331, 785
BsaXI	ACNNNNNCTCC	2 cut(s)	891, 921
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	4 cut(s)	33, 531, 1034, 1159
Bse8I	GATNNNNATC	1 cut(s)	1066
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	4 cut(s)	102, 216, 252, 810
BseGI	GGATG	5 cut(s)	75, 403, 545, 573, 649
BseJI	GATNNNNATC	1 cut(s)	1066
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	71, 275
BseNI	ACTGG	4 cut(s)	33, 531, 1034, 1159
BseRI	GAGGAG	1 cut(s)	872
BseXI	GCAGC	4 cut(s)	435, 597, 621, 901
Bsh1236I	CGCG	2 cut(s)	118, 233
BshFI	GGCC	5 cut(s)	32, 45, 128, 203, 1033
BshNI	GGYRCC	1 cut(s)	944
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	5 cut(s)	42, 303, 332, 345, 786
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	3 cut(s)	13, 939, 1148
BsmBI	CGTCTC	1 cut(s)	13
BsmI	GAATGC	3 cut(s)	588, 1095, 1191
BsnI	GGCC	5 cut(s)	32, 45, 128, 203, 1033
Bso31I	GGTCTC	1 cut(s)	1148
BsoBI	CYCGRG	1 cut(s)	356
Bsp119I	TTCGAA	1 cut(s)	1057
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	376, 757, 826
BspACI	CCGC	7 cut(s)	116, 135, 233, 265, 426, 458, 948
BspANI	GGCC	5 cut(s)	32, 45, 128, 203, 1033
BspCNI	CTCAG	2 cut(s)	72, 276
BspFNI	CGCG	2 cut(s)	118, 233
BspLI	GGNNCC	3 cut(s)	194, 808, 946
BspPI	GGATC	1 cut(s)	752
BspT104I	TTCGAA	1 cut(s)	1057
BspT107I	GGYRCC	1 cut(s)	944
BspTNI	GGTCTC	1 cut(s)	1148
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	4 cut(s)	33, 531, 1034, 1159
BssECI	CCNNGG	4 cut(s)	102, 216, 252, 810
BssMI	GATC	3 cut(s)	376, 757, 826
BssNI	GRCGYC	3 cut(s)	23, 236, 249
BssSI	CACGAG	1 cut(s)	1186
BssT1I	CCWWGG	1 cut(s)	810
Bst2BI	CACGAG	1 cut(s)	1186
Bst2UI	CCWGG	1 cut(s)	205
Bst6I	CTCTTC	2 cut(s)	62, 140
BstACI	GRCGYC	3 cut(s)	23, 236, 249
BstAUI	TGTACA	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	1057
BstC8I	GCNNGC	3 cut(s)	231, 1005, 1093
BstDEI	CTNAG	3 cut(s)	80, 284, 1071
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	5 cut(s)	75, 403, 545, 573, 649
BstFNI	CGCG	2 cut(s)	118, 233
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	2 cut(s)	16, 355
BstKTI	GATC	3 cut(s)	379, 760, 829
BstMAI	GTCTC	3 cut(s)	13, 939, 1148
BstMBI	GATC	3 cut(s)	376, 757, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 953
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	203
BstSFI	CTRYAG	1 cut(s)	600
BstUI	CGCG	2 cut(s)	118, 233
BstV1I	GCAGC	4 cut(s)	435, 597, 621, 901
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
BsuRI	GGCC	5 cut(s)	32, 45, 128, 203, 1033
BtgI	CCRYGG	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	363
BtsCI	GGATG	5 cut(s)	75, 403, 545, 573, 649
BtsIMutI	CAGTG	2 cut(s)	26, 622
Cac8I	GCNNGC	3 cut(s)	231, 1005, 1093
CfoI	GCGC	2 cut(s)	16, 355
Cfr13I	GGNCC	4 cut(s)	201, 528, 806, 1032
CseI	GACGC	4 cut(s)	225, 257, 601, 850
Csp6I	GTAC	5 cut(s)	109, 139, 463, 789, 1130
CviAII	CATG	2 cut(s)	1019, 1201
CviQI	GTAC	5 cut(s)	109, 139, 463, 789, 1130
DdeI	CTNAG	3 cut(s)	80, 284, 1071
DpnI	GATC	3 cut(s)	378, 759, 828
DpnII	GATC	3 cut(s)	376, 757, 826
DraIII	CACNNNGTG	1 cut(s)	674
EaeI	YGGCCR	2 cut(s)	30, 126
Eam1104I	CTCTTC	2 cut(s)	62, 140
EarI	CTCTTC	2 cut(s)	62, 140
Eco130I	CCWWGG	1 cut(s)	810
Eco31I	GGTCTC	1 cut(s)	1148
Eco32I	GATATC	1 cut(s)	1068
Eco47I	GGWCC	2 cut(s)	528, 806
Eco57I	CTGAAG	1 cut(s)	683
Eco88I	CYCGRG	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	1068
EcoT14I	CCWWGG	1 cut(s)	810
ErhI	CCWWGG	1 cut(s)	810
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	2 cut(s)	1022, 1204
FatI	CATG	2 cut(s)	1018, 1200
FauI	CCCGC	1 cut(s)	128
FblI	GTMKAC	1 cut(s)	490
Fnu4HI	GCNGC	8 cut(s)	234, 266, 424, 427, 586, 610, 915, 948
FokI	GGATG	5 cut(s)	62, 410, 532, 560, 636
Fsp4HI	GCNGC	8 cut(s)	234, 266, 424, 427, 586, 610, 915, 948
FspBI	CTAG	2 cut(s)	164, 578
GlaI	GCGC	2 cut(s)	15, 354
GluI	GCNGC	8 cut(s)	234, 266, 424, 427, 586, 610, 915, 948
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	5 cut(s)	32, 45, 128, 203, 1033
HapII	CCGG	5 cut(s)	42, 303, 332, 345, 786
HgaI	GACGC	4 cut(s)	225, 257, 601, 850
HhaI	GCGC	2 cut(s)	16, 355
Hin1I	GRCGYC	3 cut(s)	23, 236, 249
Hin1II	CATG	2 cut(s)	1022, 1204
Hin6I	GCGC	2 cut(s)	14, 353
HinP1I	GCGC	2 cut(s)	14, 353
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	4 cut(s)	175, 633, 703, 738
HpaII	CCGG	5 cut(s)	42, 303, 332, 345, 786
HphI	GGTGA	5 cut(s)	31, 205, 346, 463, 562
Hpy166II	GTNNAC	9 cut(s)	109, 337, 367, 448, 463, 491, 570, 745, 1027
Hpy188I	TCNGA	6 cut(s)	103, 197, 702, 757, 806, 883
Hpy188III	TCNNGA	5 cut(s)	79, 164, 185, 1010, 1186
Hpy8I	GTNNAC	9 cut(s)	109, 337, 367, 448, 463, 491, 570, 745, 1027
Hpy99I	CGWCG	2 cut(s)	241, 687
HpyAV	CCTTC	7 cut(s)	125, 189, 192, 663, 937, 1045, 1189
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	545, 719, 967, 1095
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 953
HpyF3I	CTNAG	3 cut(s)	80, 284, 1071
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	3 cut(s)	23, 236, 249
Hsp92II	CATG	2 cut(s)	1022, 1204
HspAI	GCGC	2 cut(s)	14, 353
Kzo9I	GATC	3 cut(s)	376, 757, 826
LmnI	GCTCC	5 cut(s)	198, 347, 606, 874, 1012
Lsp1109I	GCAGC	4 cut(s)	435, 597, 621, 901
LweI	GCATC	3 cut(s)	340, 554, 706
MaeI	CTAG	2 cut(s)	164, 578
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	5 cut(s)	19, 24, 469, 666, 994
MalI	GATC	3 cut(s)	378, 759, 828
MboI	GATC	3 cut(s)	376, 757, 826
MboII	GAAGA	6 cut(s)	49, 52, 157, 914, 1071, 1091
MfeI	CAATTG	1 cut(s)	951
MflI	RGATCY	1 cut(s)	757
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	5 cut(s)	274, 725, 951, 1086, 1150
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	732
MmeI	TCCRAC	1 cut(s)	1143
Mox20I	TGGCCA	1 cut(s)	32
MroXI	GAANNNNTTC	1 cut(s)	906
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	2 cut(s)	816, 1154
Msp20I	TGGCCA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	426
MspI	CCGG	5 cut(s)	42, 303, 332, 345, 786
MspR9I	CCNGG	1 cut(s)	205
MunI	CAATTG	1 cut(s)	951
Mva1269I	GAATGC	3 cut(s)	588, 1095, 1191
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	2 cut(s)	118, 233
MwoI	GCNNNNNNNGC	2 cut(s)	432, 953
NdeII	GATC	3 cut(s)	376, 757, 826
NlaIII	CATG	2 cut(s)	1022, 1204
NlaIV	GGNNCC	3 cut(s)	194, 808, 946
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	5 cut(s)	19, 24, 469, 666, 994
NspV	TTCGAA	1 cut(s)	1057
PaeR7I	CTCGAG	1 cut(s)	356
PctI	GAATGC	3 cut(s)	588, 1095, 1191
PdmI	GAANNNNTTC	1 cut(s)	906
PfeI	GAWTC	3 cut(s)	175, 633, 703
PkrI	GCNGC	8 cut(s)	235, 267, 425, 428, 587, 611, 916, 949
PleI	GAGTC	1 cut(s)	732
PpsI	GAGTC	1 cut(s)	732
PsiI	TTATAA	1 cut(s)	1085
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	3 cut(s)	194, 808, 946
PspPI	GGNCC	4 cut(s)	201, 528, 806, 1032
PspXI	VCTCGAGB	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	757
RsaI	GTAC	5 cut(s)	110, 140, 464, 790, 1131
RsaNI	GTAC	5 cut(s)	109, 139, 463, 789, 1130
SaqAI	TTAA	2 cut(s)	816, 1154
SatI	GCNGC	8 cut(s)	234, 266, 424, 427, 586, 610, 915, 948
Sau3AI	GATC	3 cut(s)	376, 757, 826
Sau96I	GGNCC	4 cut(s)	201, 528, 806, 1032
SchI	GAGTC	1 cut(s)	732
ScrFI	CCNGG	1 cut(s)	205
SfaNI	GCATC	3 cut(s)	340, 554, 706
SfcI	CTRYAG	1 cut(s)	600
Sfr274I	CTCGAG	1 cut(s)	356
SfuI	TTCGAA	1 cut(s)	1057
SinI	GGWCC	2 cut(s)	528, 806
SlaI	CTCGAG	1 cut(s)	356
SmlI	CTYRAG	3 cut(s)	356, 430, 845
SmoI	CTYRAG	3 cut(s)	356, 430, 845
Sse9I	AATT	5 cut(s)	274, 725, 951, 1086, 1150
SsiI	CCGC	7 cut(s)	116, 135, 233, 265, 426, 458, 948
SspMI	CTAG	2 cut(s)	164, 578
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	810
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	5 cut(s)	357, 685, 910, 974, 1057
TasI	AATT	5 cut(s)	274, 725, 951, 1086, 1150
TatI	WGTACW	2 cut(s)	108, 1129
TauI	GCSGC	4 cut(s)	236, 268, 429, 950
TfiI	GAWTC	3 cut(s)	175, 633, 703
Tru1I	TTAA	2 cut(s)	816, 1154
Tru9I	TTAA	2 cut(s)	816, 1154
TscAI	CASTG	2 cut(s)	33, 622
TseFI	GTSAC	5 cut(s)	19, 24, 469, 666, 994
TseI	GCWGC	4 cut(s)	423, 585, 609, 914
Tsp45I	GTSAC	5 cut(s)	19, 24, 469, 666, 994
TspDTI	ATGAA	2 cut(s)	516, 1042
TspRI	CASTG	2 cut(s)	33, 622
VpaK11BI	GGWCC	2 cut(s)	528, 806
XbaI	TCTAGA	1 cut(s)	163
XhoI	CTCGAG	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	490
XmnI	GAANNNNTTC	1 cut(s)	906
XspI	CTAG	2 cut(s)	164, 578
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.