Rh4AG366800

membrane

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
67448543 .. 67452743
4201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG366800.1

Sequence Viewer

Length: 1437 bp
ATGCTCGTCTCGGCGCTGGTGACGTCACTGGCCATAAACTCCGGCCTGTGCGTTCTCTTCTTCACGCTCTACTCCATCCTGAGAAAACAGCCGAGCAACTCCGAGGTCTACATACCGCGAGTTTTGGCCGAAGGCGGGTACAAGAAGAGTAGCCATTTCAATCTAGAGAGGCTGATTCCTTCTCCCGATTGGCTCCGAAGGGCCTGGAAGCTCACCGAGGACGATTTGCTCGAGGCGTCGGGTTTGGACGCCGTGGTTTTTATGCGGCTCATCAATTTCAGCCTGAGAGTGTTTCTGTTCGCCGGAGTTATTGGCGTTTTCGTGCTGCTTCCGGTGAACTGCTCCGGCGATGCGCTCGAGTACGTTGACTTCGCCGATCTGTCTAATAACTCATTGGATGTGTTCAGTATTTCAAATGTTGCTAGCGGCTCAAGCTTGTTATGGATTCACTTTTCGGCAGTGTACCTTGTCACCATCTTTATCTGCTGTCTACTCTATTATAGTGATGCAAAAAAATTGTATAGCAGACTCGTTCACTTGAAGTCAGATCCCAATAAGCAAAAGTATAAACGTTCCGGTACTTTTGGGTTGTTCGGACCCAAGGTTAATCTACAAGATCATTACAAAAAGACGCTTGAGGACATAGAGGAGAATGTGAGATTGGAGCAATCAGAGGTTTCGTTAGCAGGAGAAATTTCCATCTTTCTTGATCCTAAGAACATTCCTGCAAAGCTAGCTTCTGCTGTTCCTGCACAGGCGTCCTTTTTCATTGCATACGTTGTCACATCAGGATGGACGAGTACTTCATCAGAACTCTTTCGCATAATTCCTTTACTTTGGAGTCTAATGAAAAGACCTTTTACTGACAGTAAAGATGATGAACTTGAAGTTCCAGCCATTCCTTACCATAGTCACATGCCAAGAATTCTCTTTTTTGTACTTCTTGGTATCACATACTTCTTTCTAGCTCCACTAATTCTGCCCTTCCTATTGGTGTACCTCTGTCTTGGATACATAATCTATCGTAATCAGTTCATAAATGTATATGCGCCTCGGTATGAAACTGCAGGGAAGTTCTGGCCAATCGCTCACAATTCAGTTATATTTTCTCTGGTACTTATGCACGCTATTGCAGTTGGAGTCTTTACACTGAAGAGTATCCCTGTAGCATCAACCCTAACTTTCCCTCTTCCTGTGTTCACACTTCTTTTTAATGAGTACTGCCGGAAACGCTTCCTGCCCAATTTTATTGCCTATCCTGCTGAGAGTTTGTTAAAAAAGGACAGGCAAGATGAGAATGATCCTACTATGCCTGAATTTTACAGTAAATTGGTTGGTGTCTATCAAGACCCGGCTTTGATGCCTATCAATTTTTCTGCGAACGGTGACAGACTCAACAGCCCTCTTCTATCTGCTTCTTCTTCAAGTCATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

478

Amino Acids

53.89

Weight (kDa)

7.61

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSN1_TM PF13967 5 - 167 1.9e-37 Late exocytosis, associated with Golgi transport
RSN1_7TM PF02714 233 - 382 2.2e-45 Calcium-dependent channel, 7TM region, putative phosphate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 26
AccI GTMKAC 2 cut(s) 108, 490
AccII CGCG 1 cut(s) 118
AciI CCGC 4 cut(s) 116, 135, 265, 426
AclI AACGTT 1 cut(s) 571
AclWI GGATC 3 cut(s) 542, 704, 1295
AcoI YGGCCR 3 cut(s) 30, 126, 1079
AcsI RAATTY 3 cut(s) 693, 924, 1316
AcuI CTGAAG 1 cut(s) 1172
AcyI GRCGYC 4 cut(s) 23, 236, 249, 758
AfaI GTAC 9 cut(s) 140, 362, 464, 580, 802, 939, 998, 1116, 1220
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 5 cut(s) 160, 414, 541, 887, 1425
AjnI CCWGG 1 cut(s) 203
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AluBI AGCT 5 cut(s) 211, 435, 733, 737, 968
AluI AGCT 5 cut(s) 211, 435, 733, 737, 968
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 3 cut(s) 542, 704, 1295
Ama87I CYCGRG 2 cut(s) 230, 356
AoxI GGCC 5 cut(s) 30, 43, 126, 201, 1079
ApeKI GCWGC 1 cut(s) 325
ApoI RAATTY 3 cut(s) 693, 924, 1316
Asp700I GAANNNNTTC 2 cut(s) 816, 1232
AspLEI GCGC 3 cut(s) 16, 355, 1051
AspS9I GGNCC 2 cut(s) 201, 596
AsuC2I CCSGG 1 cut(s) 1352
AsuHPI GGTGA 5 cut(s) 31, 205, 346, 463, 1397
AsuNHI GCTAGC 2 cut(s) 422, 733
AvaI CYCGRG 2 cut(s) 230, 356
AvaII GGWCC 1 cut(s) 596
BalI TGGCCA 2 cut(s) 32, 1081
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
BbvI GCAGC 1 cut(s) 312
BccI CCATC 4 cut(s) 83, 482, 707, 786
BceAI ACGGC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 205
BciVI GTATCC 2 cut(s) 1004, 1169
BcnI CCSGG 1 cut(s) 1352
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 4 cut(s) 164, 423, 734, 965
BfmI CTRYAG 2 cut(s) 1065, 1164
BfoI RGCGCY 1 cut(s) 17
BfuI GTATCC 2 cut(s) 1004, 1169
BisI GCNGC 3 cut(s) 266, 326, 427
BlsI GCNGC 3 cut(s) 267, 327, 428
BmcAI AGTACT 2 cut(s) 802, 1220
Bme1390I CCNGG 2 cut(s) 205, 1352
Bme18I GGWCC 1 cut(s) 596
BmeT110I CYCGRG 2 cut(s) 230, 356
BmgT120I GGNCC 2 cut(s) 201, 596
BmiI GGNNCC 2 cut(s) 194, 598
BmrFI CCNGG 2 cut(s) 205, 1352
BmsI GCATC 4 cut(s) 340, 496, 1178, 1350
BmtI GCTAGC 2 cut(s) 426, 737
BpuEI CTTGAG 2 cut(s) 415, 656
BpuMI CCSGG 1 cut(s) 1352
BsaBI GATNNNNATC 1 cut(s) 1364
BsaHI GRCGYC 4 cut(s) 23, 236, 249, 758
BsaJI CCNNGG 5 cut(s) 102, 216, 252, 600, 1052
BsaWI WCCGGW 2 cut(s) 331, 575
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 768
Bse8I GATNNNNATC 1 cut(s) 1364
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 5 cut(s) 102, 216, 252, 600, 1052
BseGI GGATG 3 cut(s) 75, 403, 797
BseJI GATNNNNATC 1 cut(s) 1364
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 3 cut(s) 71, 275, 1254
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 662
BseXI GCAGC 1 cut(s) 312
BsgI GTGCAG 1 cut(s) 735
Bsh1236I CGCG 1 cut(s) 118
BshFI GGCC 5 cut(s) 32, 45, 128, 203, 1081
BsiHKCI CYCGRG 2 cut(s) 230, 356
BsiSI CCGG 7 cut(s) 42, 303, 332, 345, 576, 1225, 1352
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 13
BsmBI CGTCTC 1 cut(s) 13
BsnI GGCC 5 cut(s) 32, 45, 128, 203, 1081
BsoBI CYCGRG 2 cut(s) 230, 356
Bsp143I GATC 5 cut(s) 376, 547, 616, 709, 1300
BspACI CCGC 4 cut(s) 116, 135, 265, 426
BspANI GGCC 5 cut(s) 32, 45, 128, 203, 1081
BspCNI CTCAG 3 cut(s) 72, 276, 1255
BspFNI CGCG 1 cut(s) 118
BspHI TCATGA 1 cut(s) 1433
BspLI GGNNCC 2 cut(s) 194, 598
BspMAI CTGCAG 1 cut(s) 1069
BspOI GCTAGC 2 cut(s) 426, 737
BspPI GGATC 3 cut(s) 542, 704, 1295
BsrDI GCAATG 1 cut(s) 768
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 5 cut(s) 102, 216, 252, 600, 1052
BssMI GATC 5 cut(s) 376, 547, 616, 709, 1300
BssNI GRCGYC 4 cut(s) 23, 236, 249, 758
BssT1I CCWWGG 1 cut(s) 600
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 3 cut(s) 869, 1325, 1385
Bst6I CTCTTC 5 cut(s) 62, 140, 1148, 1194, 1410
BstACI GRCGYC 4 cut(s) 23, 236, 249, 758
BstC8I GCNNGC 3 cut(s) 424, 735, 1125
BstDEI CTNAG 4 cut(s) 80, 284, 714, 1263
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 3 cut(s) 75, 403, 797
BstFNI CGCG 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 3 cut(s) 16, 355, 1051
BstKTI GATC 5 cut(s) 379, 550, 619, 712, 1303
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 5 cut(s) 376, 547, 616, 709, 1300
BstMWI GCNNNNNNNGC 5 cut(s) 432, 734, 749, 1230, 1259
BstNI CCWGG 1 cut(s) 205
BstNSI RCATGY 1 cut(s) 919
BstSCI CCNGG 2 cut(s) 203, 1350
BstSFI CTRYAG 2 cut(s) 1065, 1164
BstUI CGCG 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuI GTATCC 2 cut(s) 1004, 1169
BsuRI GGCC 5 cut(s) 32, 45, 128, 203, 1081
BtgI CCRYGG 1 cut(s) 252
BtgZI GCGATG 1 cut(s) 363
BtsCI GGATG 3 cut(s) 75, 403, 797
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 3 cut(s) 26, 465, 1148
Cac8I GCNNGC 3 cut(s) 424, 735, 1125
CciI TCATGA 1 cut(s) 1433
CfoI GCGC 3 cut(s) 16, 355, 1051
Cfr13I GGNCC 2 cut(s) 201, 596
CseI GACGC 4 cut(s) 225, 257, 640, 747
Csp6I GTAC 9 cut(s) 139, 361, 463, 579, 801, 938, 997, 1115, 1219
CviAII CATG 2 cut(s) 916, 1434
CviQI GTAC 9 cut(s) 139, 361, 463, 579, 801, 938, 997, 1115, 1219
DdeI CTNAG 4 cut(s) 80, 284, 714, 1263
DpnI GATC 5 cut(s) 378, 549, 618, 711, 1302
DpnII GATC 5 cut(s) 376, 547, 616, 709, 1300
EaeI YGGCCR 3 cut(s) 30, 126, 1079
Eam1104I CTCTTC 5 cut(s) 62, 140, 1148, 1194, 1410
EarI CTCTTC 5 cut(s) 62, 140, 1148, 1194, 1410
Eco130I CCWWGG 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 1172
Eco88I CYCGRG 2 cut(s) 230, 356
EcoO109I RGGNCCY 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 924
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 600
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 2 cut(s) 919, 1437
FatI CATG 2 cut(s) 915, 1433
FauI CCCGC 1 cut(s) 128
FblI GTMKAC 2 cut(s) 108, 490
Fnu4HI GCNGC 3 cut(s) 266, 326, 427
FokI GGATG 3 cut(s) 62, 410, 804
Fsp4HI GCNGC 3 cut(s) 266, 326, 427
FspBI CTAG 4 cut(s) 164, 423, 734, 965
GlaI GCGC 3 cut(s) 15, 354, 1050
GluI GCNGC 3 cut(s) 266, 326, 427
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 5 cut(s) 32, 45, 128, 203, 1081
HapII CCGG 7 cut(s) 42, 303, 332, 345, 576, 1225, 1352
HgaI GACGC 4 cut(s) 225, 257, 640, 747
HhaI GCGC 3 cut(s) 16, 355, 1051
Hin1I GRCGYC 4 cut(s) 23, 236, 249, 758
Hin1II CATG 2 cut(s) 919, 1437
Hin6I GCGC 3 cut(s) 14, 353, 1049
HinP1I GCGC 3 cut(s) 14, 353, 1049
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 433
HinfI GANTC 6 cut(s) 175, 445, 528, 841, 1140, 1392
HpaII CCGG 7 cut(s) 42, 303, 332, 345, 576, 1225, 1352
HphI GGTGA 5 cut(s) 31, 205, 346, 463, 1397
Hpy166II GTNNAC 8 cut(s) 109, 337, 367, 463, 491, 535, 997, 1200
Hpy188I TCNGA 6 cut(s) 103, 197, 547, 596, 673, 811
Hpy188III TCNNGA 7 cut(s) 79, 164, 185, 707, 789, 1346, 1434
Hpy8I GTNNAC 8 cut(s) 109, 337, 367, 463, 491, 535, 997, 1200
Hpy99I CGWCG 1 cut(s) 241
HpyAV CCTTC 4 cut(s) 125, 189, 192, 994
HpyCH4III ACNGT 3 cut(s) 869, 1325, 1385
HpyCH4IV ACGT 4 cut(s) 23, 363, 571, 777
HpyCH4V TGCA 7 cut(s) 509, 728, 752, 773, 1067, 1123, 1133
HpyF10VI GCNNNNNNNGC 5 cut(s) 432, 734, 749, 1230, 1259
HpyF3I CTNAG 4 cut(s) 80, 284, 714, 1263
HpySE526I ACGT 4 cut(s) 23, 363, 571, 777
Hsp92I GRCGYC 4 cut(s) 23, 236, 249, 758
Hsp92II CATG 2 cut(s) 919, 1437
HspAI GCGC 3 cut(s) 14, 353, 1049
Kzo9I GATC 5 cut(s) 376, 547, 616, 709, 1300
LmnI GCTCC 4 cut(s) 198, 347, 664, 973
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 4 cut(s) 340, 496, 1178, 1350
MaeI CTAG 4 cut(s) 164, 423, 734, 965
MaeII ACGT 4 cut(s) 23, 363, 571, 777
MaeIII GTNAC 6 cut(s) 19, 24, 469, 781, 911, 1385
MalI GATC 5 cut(s) 378, 549, 618, 711, 1302
MboI GATC 5 cut(s) 376, 547, 616, 709, 1300
MboII GAAGA 8 cut(s) 49, 52, 157, 1165, 1181, 1397, 1410, 1413
MflI RGATCY 1 cut(s) 547
MlsI TGGCCA 2 cut(s) 32, 1081
MluNI TGGCCA 2 cut(s) 32, 1081
MlyI GAGTC 4 cut(s) 522, 850, 1149, 1386
MmeI TCCRAC 1 cut(s) 1117
Mox20I TGGCCA 2 cut(s) 32, 1081
MroXI GAANNNNTTC 2 cut(s) 816, 1232
MscI TGGCCA 2 cut(s) 32, 1081
MseI TTAA 3 cut(s) 606, 1212, 1274
MslI CAYNNNNRTG 1 cut(s) 790
Msp20I TGGCCA 2 cut(s) 32, 1081
MspI CCGG 7 cut(s) 42, 303, 332, 345, 576, 1225, 1352
MspR9I CCNGG 2 cut(s) 205, 1352
MvaI CCWGG 1 cut(s) 205
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 5 cut(s) 432, 734, 749, 1230, 1259
NciI CCSGG 1 cut(s) 1352
NdeII GATC 5 cut(s) 376, 547, 616, 709, 1300
NheI GCTAGC 2 cut(s) 422, 733
NlaIII CATG 2 cut(s) 919, 1437
NlaIV GGNNCC 2 cut(s) 194, 598
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 6 cut(s) 19, 24, 469, 781, 911, 1385
NspI RCATGY 1 cut(s) 919
PaeR7I CTCGAG 2 cut(s) 230, 356
PagI TCATGA 1 cut(s) 1433
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PdmI GAANNNNTTC 2 cut(s) 816, 1232
PfeI GAWTC 2 cut(s) 175, 445
PkrI GCNGC 3 cut(s) 267, 327, 428
PleI GAGTC 4 cut(s) 522, 849, 1148, 1386
PpsI GAGTC 4 cut(s) 522, 849, 1148, 1386
Psp1406I AACGTT 1 cut(s) 571
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 194, 598
PspPI GGNCC 2 cut(s) 201, 596
PspXI VCTCGAGB 2 cut(s) 230, 356
PstI CTGCAG 1 cut(s) 1069
PsuI RGATCY 1 cut(s) 547
RsaI GTAC 9 cut(s) 140, 362, 464, 580, 802, 939, 998, 1116, 1220
RsaNI GTAC 9 cut(s) 139, 361, 463, 579, 801, 938, 997, 1115, 1219
RseI CAYNNNNRTG 1 cut(s) 790
SaqAI TTAA 3 cut(s) 606, 1212, 1274
SatI GCNGC 3 cut(s) 266, 326, 427
Sau3AI GATC 5 cut(s) 376, 547, 616, 709, 1300
Sau96I GGNCC 2 cut(s) 201, 596
ScaI AGTACT 2 cut(s) 802, 1220
SchI GAGTC 4 cut(s) 522, 850, 1149, 1386
ScrFI CCNGG 2 cut(s) 205, 1352
SfaNI GCATC 4 cut(s) 340, 496, 1178, 1350
SfcI CTRYAG 2 cut(s) 1065, 1164
Sfr274I CTCGAG 2 cut(s) 230, 356
SinI GGWCC 1 cut(s) 596
SlaI CTCGAG 2 cut(s) 230, 356
SmiMI CAYNNNNRTG 1 cut(s) 790
SmlI CTYRAG 4 cut(s) 230, 356, 430, 635
SmoI CTYRAG 4 cut(s) 230, 356, 430, 635
SsiI CCGC 4 cut(s) 116, 135, 265, 426
SspMI CTAG 4 cut(s) 164, 423, 734, 965
StyD4I CCNGG 2 cut(s) 203, 1350
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 3 cut(s) 869, 1325, 1385
TaiI ACGT 4 cut(s) 26, 366, 574, 780
TaqI TCGA 2 cut(s) 231, 357
TatI WGTACW 3 cut(s) 800, 937, 1218
TauI GCSGC 2 cut(s) 268, 429
TfiI GAWTC 2 cut(s) 175, 445
Tru1I TTAA 3 cut(s) 606, 1212, 1274
Tru9I TTAA 3 cut(s) 606, 1212, 1274
TscAI CASTG 3 cut(s) 33, 465, 1155
TseFI GTSAC 6 cut(s) 19, 24, 469, 781, 911, 1385
TseI GCWGC 1 cut(s) 325
Tsp45I GTSAC 6 cut(s) 19, 24, 469, 781, 911, 1385
TspDTI ATGAA 7 cut(s) 757, 795, 863, 894, 1024, 1074, 1422
TspRI CASTG 3 cut(s) 33, 465, 1155
VpaK11BI GGWCC 1 cut(s) 596
XapI RAATTY 3 cut(s) 693, 924, 1316
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 1 cut(s) 919
XhoI CTCGAG 2 cut(s) 230, 356
XmiI GTMKAC 2 cut(s) 108, 490
XmnI GAANNNNTTC 2 cut(s) 816, 1232
XspI CTAG 4 cut(s) 164, 423, 734, 965
ZraI GACGTC 1 cut(s) 24
ZrmI AGTACT 2 cut(s) 802, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.