Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005229

Physical Location & Seq

Genomic Coordinates Reverse (-)

59095958 .. 59100157

Gene Structure 4200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG372900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGCTCGTCTCGGCGCTGGTGACGTCACTGGCCATAAACTCCGGCCTGTGCGTTCTCTTCTTCACGCTCTACTCCATCCTGAGAAAACAGCCGAGCAACTCCGAGGTCTACATACCGCGAGTTTTGGCCGAAGGCGGGTACAAGAAGAGTAGCCATTTCAATCTAGAGAGGCTGATTCCTTCTCCCGATTGGCTCCGAAGGGCCTGGAAGCTCACCGAGGACGATTTGCTCGAGGCGTCGGGTTTGGACGCCGTGAGTGATGCAAAAAAATTGTATAGCAGACTCGTTCACTTGAAGTCAGATCCCAATAAGCAAAAGTATAAACGTTCCGGTACTTTTGGGTTGTTCGGACCCAAGGTTAATCTACAAGATCATTACAAAAAGACGCTTGAGGACATAGAGGAGAATGTGAGATTGGAGCAATCAGAGGTTTCGTTAGCAGGAGAAATTTCCATCTTTCTTGATCCTAAGAACATTCCTGCAAAGCTAGCTTCTGCTGTTCCTGCACAGGCGTCCTTTTTCATTGCATACGTTGTCACATCAGGATGGACGAGTACTTCATCAGAACTCTTTCGCATAATTCCTTTACTTTGGAGTCTAATGAAAAGACCTTTTACTGACAGTAAAGATGATGAACTTGAAGTTCCAGCCATTCCTTACCATAGTCACATGCCAAGAATTCTCTTTTTTGTACTTCTTGGTATCACATACTTCTTTCTAGCTCCACTAATTCTGCCCTTCCTATTGGTGTACCTCTGTCTTGGATACATAATCTATCGTAATCAGTTCATAAATGTATATGCGCCTCGGTATGAAACTGCGGGGAAGTTCTGGCCAATCGCTCACAATTCAGTTATATTTTCTCTGGTACTTATGCACGCTATTGCAGTTGGAGTCTTTACACTGAAGAGTATCCCTGTAGCATCAACCCTAACTTTCCCTCTTCCTGTGTTCACACTTCTTTTTAATGAGTACTGCCGGAAACGCTTCCTGCCCAATTTTATTGCCTATCCTGCTGAGAGTTTGTTAAAAAAGGACAGGCAAGATGAGAATGATCCTACTATGCCTGAATTTTACAGTAAATTGGTTGGTGTCTATCAAGACCCGGCTTTGATGCCTATCAATTTTTCTGCGAACGGTGACAGACTCAACAGCCCTCTTCTATCTGCTTCTTCTTCAAGTCATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

396

Amino Acids

44.78

Weight (kDa)

8.71

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RSN1_TM	PF13967	5 - 85	1.6e-13	Late exocytosis, associated with Golgi transport
RSN1_7TM	PF02714	151 - 300	1.5e-45	Calcium-dependent channel, 7TM region, putative phosphate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69450 AT1G69450 AT1G69450
fragaria_vesca	FvH4_4g30740 FvH4_4g30740
malus_domestica	MD13G1068300.v1.1 MD16G1067100.v1.1
prunus_persica	Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1
pyrus_communis	pycom13g06010 pycom16g05850
rosa_chinensis	RchiOBHm_Chr4g0439131
rosa_laevigata	RLG00000006295
rosa_multiflora	Rmu_sc0002236.1_g000001 Rmu_sc0005346.1_g000005 Rmu_sc0027506.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380120
rosa_rugosa	Rorug04G0315900 Rorug04G0315900
rosa_samantha	Rh4AG366800 Rh4BG378300 Rh4CG392400 Rh4CG392500 Rh4DG372900
rosa_wichuraiana	Rw0G007500 Rw0G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	118
AciI	CCGC	3 cut(s)	116, 135, 821
AclI	AACGTT	1 cut(s)	325
AclWI	GGATC	3 cut(s)	296, 458, 1049
AcoI	YGGCCR	3 cut(s)	30, 126, 833
AcsI	RAATTY	3 cut(s)	447, 678, 1070
AcuI	CTGAAG	1 cut(s)	926
AcyI	GRCGYC	4 cut(s)	23, 236, 249, 512
AfaI	GTAC	7 cut(s)	140, 334, 556, 693, 752, 870, 974
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	4 cut(s)	160, 295, 641, 1179
AjnI	CCWGG	1 cut(s)	203
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	4 cut(s)	211, 487, 491, 722
AluI	AGCT	4 cut(s)	211, 487, 491, 722
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	3 cut(s)	296, 458, 1049
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	5 cut(s)	30, 43, 126, 201, 833
ApoI	RAATTY	3 cut(s)	447, 678, 1070
Asp700I	GAANNNNTTC	2 cut(s)	570, 986
AspLEI	GCGC	2 cut(s)	16, 805
AspS9I	GGNCC	2 cut(s)	201, 350
AsuC2I	CCSGG	1 cut(s)	1106
AsuHPI	GGTGA	3 cut(s)	31, 205, 1151
AsuNHI	GCTAGC	1 cut(s)	487
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	350
BalI	TGGCCA	2 cut(s)	32, 835
BccI	CCATC	3 cut(s)	83, 461, 540
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	205
BciVI	GTATCC	2 cut(s)	758, 923
BcnI	CCSGG	1 cut(s)	1106
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	3 cut(s)	164, 488, 719
BfmI	CTRYAG	1 cut(s)	918
BfoI	RGCGCY	1 cut(s)	17
BfuI	GTATCC	2 cut(s)	758, 923
BmcAI	AGTACT	2 cut(s)	556, 974
Bme1390I	CCNGG	2 cut(s)	205, 1106
Bme18I	GGWCC	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	201, 350
BmiI	GGNNCC	2 cut(s)	194, 352
BmrFI	CCNGG	2 cut(s)	205, 1106
BmsI	GCATC	3 cut(s)	250, 932, 1104
BmtI	GCTAGC	1 cut(s)	491
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	1106
BsaBI	GATNNNNATC	1 cut(s)	1118
BsaHI	GRCGYC	4 cut(s)	23, 236, 249, 512
BsaJI	CCNNGG	4 cut(s)	102, 216, 354, 806
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	522
Bse8I	GATNNNNATC	1 cut(s)	1118
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	4 cut(s)	102, 216, 354, 806
BseGI	GGATG	2 cut(s)	75, 551
BseJI	GATNNNNATC	1 cut(s)	1118
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	71, 1008
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	416
BsgI	GTGCAG	1 cut(s)	489
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	5 cut(s)	32, 45, 128, 203, 835
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	4 cut(s)	42, 330, 979, 1106
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	13
BsmBI	CGTCTC	1 cut(s)	13
BsnI	GGCC	5 cut(s)	32, 45, 128, 203, 835
BsoBI	CYCGRG	1 cut(s)	230
Bsp143I	GATC	4 cut(s)	301, 370, 463, 1054
BspACI	CCGC	3 cut(s)	116, 135, 821
BspANI	GGCC	5 cut(s)	32, 45, 128, 203, 835
BspCNI	CTCAG	2 cut(s)	72, 1009
BspFNI	CGCG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	1187
BspLI	GGNNCC	2 cut(s)	194, 352
BspOI	GCTAGC	1 cut(s)	491
BspPI	GGATC	3 cut(s)	296, 458, 1049
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	4 cut(s)	102, 216, 354, 806
BssMI	GATC	4 cut(s)	301, 370, 463, 1054
BssNI	GRCGYC	4 cut(s)	23, 236, 249, 512
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	3 cut(s)	623, 1079, 1139
Bst6I	CTCTTC	5 cut(s)	62, 140, 902, 948, 1164
BstACI	GRCGYC	4 cut(s)	23, 236, 249, 512
BstC8I	GCNNGC	2 cut(s)	489, 879
BstDEI	CTNAG	3 cut(s)	80, 468, 1017
BstF5I	GGATG	2 cut(s)	75, 551
BstFNI	CGCG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	2 cut(s)	16, 805
BstKTI	GATC	4 cut(s)	304, 373, 466, 1057
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	4 cut(s)	301, 370, 463, 1054
BstMWI	GCNNNNNNNGC	4 cut(s)	488, 503, 984, 1013
BstNI	CCWGG	1 cut(s)	205
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	2 cut(s)	203, 1104
BstSFI	CTRYAG	1 cut(s)	918
BstUI	CGCG	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuI	GTATCC	2 cut(s)	758, 923
BsuRI	GGCC	5 cut(s)	32, 45, 128, 203, 835
BtsCI	GGATG	2 cut(s)	75, 551
BtsIMutI	CAGTG	2 cut(s)	26, 902
Cac8I	GCNNGC	2 cut(s)	489, 879
CciI	TCATGA	1 cut(s)	1187
CfoI	GCGC	2 cut(s)	16, 805
Cfr13I	GGNCC	2 cut(s)	201, 350
CseI	GACGC	4 cut(s)	225, 257, 394, 501
Csp6I	GTAC	7 cut(s)	139, 333, 555, 692, 751, 869, 973
CviAII	CATG	2 cut(s)	670, 1188
CviQI	GTAC	7 cut(s)	139, 333, 555, 692, 751, 869, 973
DdeI	CTNAG	3 cut(s)	80, 468, 1017
DpnI	GATC	4 cut(s)	303, 372, 465, 1056
DpnII	GATC	4 cut(s)	301, 370, 463, 1054
EaeI	YGGCCR	3 cut(s)	30, 126, 833
Eam1104I	CTCTTC	5 cut(s)	62, 140, 902, 948, 1164
EarI	CTCTTC	5 cut(s)	62, 140, 902, 948, 1164
Eco130I	CCWWGG	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	926
Eco88I	CYCGRG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	678
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	2 cut(s)	673, 1191
FatI	CATG	2 cut(s)	669, 1187
FauI	CCCGC	2 cut(s)	128, 814
FblI	GTMKAC	1 cut(s)	108
FokI	GGATG	2 cut(s)	62, 558
FspBI	CTAG	3 cut(s)	164, 488, 719
GlaI	GCGC	2 cut(s)	15, 804
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	5 cut(s)	32, 45, 128, 203, 835
HapII	CCGG	4 cut(s)	42, 330, 979, 1106
HgaI	GACGC	4 cut(s)	225, 257, 394, 501
HhaI	GCGC	2 cut(s)	16, 805
Hin1I	GRCGYC	4 cut(s)	23, 236, 249, 512
Hin1II	CATG	2 cut(s)	673, 1191
Hin6I	GCGC	2 cut(s)	14, 803
HinP1I	GCGC	2 cut(s)	14, 803
HinfI	GANTC	5 cut(s)	175, 282, 595, 894, 1146
HpaII	CCGG	4 cut(s)	42, 330, 979, 1106
HphI	GGTGA	3 cut(s)	31, 205, 1151
Hpy166II	GTNNAC	4 cut(s)	109, 289, 751, 954
Hpy188I	TCNGA	6 cut(s)	103, 197, 301, 350, 427, 565
Hpy188III	TCNNGA	7 cut(s)	79, 164, 185, 461, 543, 1100, 1188
Hpy8I	GTNNAC	4 cut(s)	109, 289, 751, 954
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	4 cut(s)	125, 189, 192, 748
HpyCH4III	ACNGT	3 cut(s)	623, 1079, 1139
HpyCH4IV	ACGT	3 cut(s)	23, 325, 531
HpyCH4V	TGCA	6 cut(s)	263, 482, 506, 527, 877, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	488, 503, 984, 1013
HpyF3I	CTNAG	3 cut(s)	80, 468, 1017
HpySE526I	ACGT	3 cut(s)	23, 325, 531
Hsp92I	GRCGYC	4 cut(s)	23, 236, 249, 512
Hsp92II	CATG	2 cut(s)	673, 1191
HspAI	GCGC	2 cut(s)	14, 803
Kzo9I	GATC	4 cut(s)	301, 370, 463, 1054
LmnI	GCTCC	3 cut(s)	198, 418, 727
LweI	GCATC	3 cut(s)	250, 932, 1104
MaeI	CTAG	3 cut(s)	164, 488, 719
MaeII	ACGT	3 cut(s)	23, 325, 531
MaeIII	GTNAC	5 cut(s)	19, 24, 535, 665, 1139
MalI	GATC	4 cut(s)	303, 372, 465, 1056
MboI	GATC	4 cut(s)	301, 370, 463, 1054
MboII	GAAGA	8 cut(s)	49, 52, 157, 919, 935, 1151, 1164, 1167
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	2 cut(s)	32, 835
MluNI	TGGCCA	2 cut(s)	32, 835
MlyI	GAGTC	4 cut(s)	276, 604, 903, 1140
MmeI	TCCRAC	1 cut(s)	871
Mox20I	TGGCCA	2 cut(s)	32, 835
MroXI	GAANNNNTTC	2 cut(s)	570, 986
MscI	TGGCCA	2 cut(s)	32, 835
MseI	TTAA	3 cut(s)	360, 966, 1028
MslI	CAYNNNNRTG	1 cut(s)	544
Msp20I	TGGCCA	2 cut(s)	32, 835
MspI	CCGG	4 cut(s)	42, 330, 979, 1106
MspR9I	CCNGG	2 cut(s)	205, 1106
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	4 cut(s)	488, 503, 984, 1013
NciI	CCSGG	1 cut(s)	1106
NdeII	GATC	4 cut(s)	301, 370, 463, 1054
NheI	GCTAGC	1 cut(s)	487
NlaIII	CATG	2 cut(s)	673, 1191
NlaIV	GGNNCC	2 cut(s)	194, 352
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	5 cut(s)	19, 24, 535, 665, 1139
NspI	RCATGY	1 cut(s)	673
PaeR7I	CTCGAG	1 cut(s)	230
PagI	TCATGA	1 cut(s)	1187
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PdmI	GAANNNNTTC	2 cut(s)	570, 986
PfeI	GAWTC	1 cut(s)	175
PleI	GAGTC	4 cut(s)	276, 603, 902, 1140
PpsI	GAGTC	4 cut(s)	276, 603, 902, 1140
Psp1406I	AACGTT	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	194, 352
PspPI	GGNCC	2 cut(s)	201, 350
PspXI	VCTCGAGB	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	7 cut(s)	140, 334, 556, 693, 752, 870, 974
RsaNI	GTAC	7 cut(s)	139, 333, 555, 692, 751, 869, 973
RseI	CAYNNNNRTG	1 cut(s)	544
SaqAI	TTAA	3 cut(s)	360, 966, 1028
Sau3AI	GATC	4 cut(s)	301, 370, 463, 1054
Sau96I	GGNCC	2 cut(s)	201, 350
ScaI	AGTACT	2 cut(s)	556, 974
SchI	GAGTC	4 cut(s)	276, 604, 903, 1140
ScrFI	CCNGG	2 cut(s)	205, 1106
SfaNI	GCATC	3 cut(s)	250, 932, 1104
SfcI	CTRYAG	1 cut(s)	918
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	350
SlaI	CTCGAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	544
SmlI	CTYRAG	2 cut(s)	230, 389
SmoI	CTYRAG	2 cut(s)	230, 389
SsiI	CCGC	3 cut(s)	116, 135, 821
SspMI	CTAG	3 cut(s)	164, 488, 719
StyD4I	CCNGG	2 cut(s)	203, 1104
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	3 cut(s)	623, 1079, 1139
TaiI	ACGT	3 cut(s)	26, 328, 534
TaqI	TCGA	1 cut(s)	231
TatI	WGTACW	3 cut(s)	554, 691, 972
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	3 cut(s)	360, 966, 1028
Tru9I	TTAA	3 cut(s)	360, 966, 1028
TscAI	CASTG	2 cut(s)	33, 909
TseFI	GTSAC	5 cut(s)	19, 24, 535, 665, 1139
Tsp45I	GTSAC	5 cut(s)	19, 24, 535, 665, 1139
TspDTI	ATGAA	7 cut(s)	511, 549, 617, 648, 778, 828, 1176
TspRI	CASTG	2 cut(s)	33, 909
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	3 cut(s)	447, 678, 1070
XbaI	TCTAGA	1 cut(s)	163
XceI	RCATGY	1 cut(s)	673
XhoI	CTCGAG	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	108
XmnI	GAANNNNTTC	2 cut(s)	570, 986
XspI	CTAG	3 cut(s)	164, 488, 719
ZraI	GACGTC	1 cut(s)	24
ZrmI	AGTACT	2 cut(s)	556, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.