Rh4CG392400

membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0005229
Physical Location & Seq
Reverse (-)
64244303 .. 64244828
526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG392400.1

Sequence Viewer

Length: 429 bp
ATGCTGAGCAAAAATTCTCTGCAGTTCATAAATGTATATGCGCCTCGGTATGAAACTGCGGGGAAGTTCTGGCCAATCGCTCACAATTCAGTTATATTTTCTCTGGTACTTATGCACGCTATTGCAGTTGGAGTCTTTACACTGAAGAATATCCCTGTAGCATCAACCCTAACTTTCCCTCTTCCTGTGTTCACACTTCTTTTTAATGAGTACTGCCGGAAACGCTTCCTGCCCAATTTTATTGCCTATCCTGCTGAGAGTTTGTTAAAAAAGGACAGGCAAGATGAGAATGATCCTACTATGCCTGAATTTTACAGTAAATTGGTTGGTGTCTATCAAGACCCGGCTTTGATGCCTATCAATTTTTCTGCGAACGGTGACAGACTCAACAGCCCTCTTCTATCTGCTTCTTCTTCAAGTCATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

142

Amino Acids

15.96

Weight (kDa)

8.73

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSN1_7TM PF02714 8 - 46 1.1e-08 Calcium-dependent channel, 7TM region, putative phosphate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 59
AclWI GGATC 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 71
AcsI RAATTY 2 cut(s) 13, 308
AcuI CTGAAG 1 cut(s) 164
AfaI GTAC 2 cut(s) 108, 212
AgsI TTSAA 1 cut(s) 417
AlwI GGATC 1 cut(s) 287
AoxI GGCC 1 cut(s) 71
ApoI RAATTY 2 cut(s) 13, 308
Asp700I GAANNNNTTC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 43
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 389
BalI TGGCCA 1 cut(s) 73
BcnI CCSGG 1 cut(s) 344
BfmI CTRYAG 2 cut(s) 20, 156
BlpI GCTNAGC 1 cut(s) 5
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 344
BmsI GCATC 2 cut(s) 170, 342
Bpu1102I GCTNAGC 1 cut(s) 5
BpuMI CCSGG 1 cut(s) 344
BsaBI GATNNNNATC 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 44
Bse8I GATNNNNATC 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 44
BseJI GATNNNNATC 1 cut(s) 356
BseMII CTCAG 1 cut(s) 246
BshFI GGCC 1 cut(s) 73
BsiSI CCGG 2 cut(s) 217, 344
BsnI GGCC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 292
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 247
BspHI TCATGA 1 cut(s) 425
BspMAI CTGCAG 1 cut(s) 24
BspPI GGATC 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 1 cut(s) 292
Bst4CI ACNGT 2 cut(s) 317, 377
Bst6I CTCTTC 2 cut(s) 186, 402
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 5, 255
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 2 cut(s) 222, 251
BstSCI CCNGG 1 cut(s) 342
BstSFI CTRYAG 2 cut(s) 20, 156
BsuRI GGCC 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 117
CciI TCATGA 1 cut(s) 425
CfoI GCGC 1 cut(s) 43
Csp6I GTAC 2 cut(s) 107, 211
CviAII CATG 1 cut(s) 426
CviJI RGCY 3 cut(s) 73, 347, 393
CviKI_1 RGCY 3 cut(s) 73, 347, 393
CviQI GTAC 2 cut(s) 107, 211
DdeI CTNAG 2 cut(s) 5, 255
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 71
Eam1104I CTCTTC 2 cut(s) 186, 402
EarI CTCTTC 2 cut(s) 186, 402
Eco57I CTGAAG 1 cut(s) 164
FaeI CATG 1 cut(s) 429
FaiI YATR 8 cut(s) 29, 37, 39, 51, 95, 113, 302, 427
FatI CATG 1 cut(s) 425
FauI CCCGC 1 cut(s) 52
GlaI GCGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 73
HapII CCGG 2 cut(s) 217, 344
HhaI GCGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 429
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 2 cut(s) 132, 384
HpaII CCGG 2 cut(s) 217, 344
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 1 cut(s) 192
Hpy188III TCNNGA 2 cut(s) 338, 426
Hpy8I GTNNAC 1 cut(s) 192
HpyCH4III ACNGT 2 cut(s) 317, 377
HpyCH4V TGCA 3 cut(s) 22, 115, 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 251
HpyF3I CTNAG 2 cut(s) 5, 255
Hsp92II CATG 1 cut(s) 429
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 1 cut(s) 292
LweI GCATC 2 cut(s) 170, 342
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 5 cut(s) 157, 173, 389, 402, 405
MlsI TGGCCA 1 cut(s) 73
MluCI AATT 6 cut(s) 13, 85, 235, 308, 320, 361
MluNI TGGCCA 1 cut(s) 73
MlyI GAGTC 2 cut(s) 141, 378
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 3 cut(s) 54, 189, 405
Mox20I TGGCCA 1 cut(s) 73
MroXI GAANNNNTTC 1 cut(s) 224
MscI TGGCCA 1 cut(s) 73
MseI TTAA 2 cut(s) 204, 266
Msp20I TGGCCA 1 cut(s) 73
MspI CCGG 2 cut(s) 217, 344
MspR9I CCNGG 1 cut(s) 344
MwoI GCNNNNNNNGC 2 cut(s) 222, 251
NciI CCSGG 1 cut(s) 344
NdeII GATC 1 cut(s) 292
NlaIII CATG 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 377
PagI TCATGA 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 224
PleI GAGTC 2 cut(s) 140, 378
PpsI GAGTC 2 cut(s) 140, 378
PstI CTGCAG 1 cut(s) 24
RsaI GTAC 2 cut(s) 108, 212
RsaNI GTAC 2 cut(s) 107, 211
SaqAI TTAA 2 cut(s) 204, 266
Sau3AI GATC 1 cut(s) 292
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 2 cut(s) 141, 378
ScrFI CCNGG 1 cut(s) 344
SfaNI GCATC 2 cut(s) 170, 342
SfcI CTRYAG 2 cut(s) 20, 156
Sse9I AATT 6 cut(s) 13, 85, 235, 308, 320, 361
SsiI CCGC 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 342
TaaI ACNGT 2 cut(s) 317, 377
TasI AATT 6 cut(s) 13, 85, 235, 308, 320, 361
TatI WGTACW 1 cut(s) 210
Tru1I TTAA 2 cut(s) 204, 266
Tru9I TTAA 2 cut(s) 204, 266
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 16, 66, 414
TspRI CASTG 1 cut(s) 147
XapI RAATTY 2 cut(s) 13, 308
XmnI GAANNNNTTC 1 cut(s) 224
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.