Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005229

Physical Location & Seq

Genomic Coordinates Reverse (-)

60302475 .. 60304529

Gene Structure 2055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGCTCGTCTCGGCGCTGGTGACGTCACTGGCCATAAACTCCGGCCTGTGCGTTCTCTTCTTCACGCTCTACTCCATCCTGAGAAAACAGCCGAGCAACTCCGAGGTCTACATACCGCGAGTTTTGGCGGAAGGCGGGTACAAGAAGAGTAGCCATTTCAATCTAGAGAGGCTGATTCCTTCTCCCGATTGGCTCCGAAGGGCCTGGAAGCTCACCGAGGACGATTTGCTCGCGGCGTCGGGTTTGGACGCCGTGGTTTTTATGCGGCTCATCAATTTCAGCCTGAGAGTGTTTGTGTTCGCCGGAGTTATTGGCGTTTTCGTGCTGCTTCCGGTGAACTGCTCCGGCGATGCGCTCGAGTATGTTGACTTCGCCGATCTGTCTAATAACTCATTGGATGTGTTCAGTATTTCAAATGAATATAGATATATCTGTGAAAAGAGGACCAGTTATTTTCTTGCATCCAAGCCTCAACCACATCAGTTCACCATCCTAGTTCGCAGCATTCCTGTTCCTGTAGGGAGCAGCGTCAGTGATAGTGTTGAGAGATTCTTTAGCGAGTATCATCCTTCTACATATCTGTCACATAGTGTTGTTCGTCGAACAAACAAACTTCAGAATCTCATTAGTGATGCAAAAAAATTATATAGCAGACTTGTTCACTTGAAGTCAGATCCCAATAAGCAAAAGTATAAACGTTCCGGTACTTTTGGGTTGTTCGGACCCAAGGTTAATCTACAAGATCATTACGAAAAGACGCTTGAGGACATAGAGGAGAATGTGAGATTGGAGCAATCAGAGGTTTCGTTAGCAGGAGAAGAAGTTCGAGCTGCTTTTGTGTCCTTCAAGTCTCGGTATGGTGCCGCAATTGCTTTCCACTTGCAACAATCGACCAATCCTACACGATGGGTCACAGAGCAAGCTCCTGAACCACATGATGTTTACTGGCCCTTCTTTTCCTCATCATTCATTCGAAGATGGATATCTAAGCTGGTGGTTATAATTGCTTGCATTCTTCTTACAATTCTATTCCTCATTCCTGTTGTACTTGTTCAAGGTCTCACTAACTTAAGCCAGTTGGAAATCTACTTTCCCTTCCTCACGAGCATTCTAACCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

373

Amino Acids

42.4

Weight (kDa)

8.73

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RSN1_TM	PF13967	5 - 139	2.9e-27	Late exocytosis, associated with Golgi transport
PHM7_cyt	PF14703	161 - 317	5.1e-38	Cytosolic domain of 10TM putative phosphate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69450 AT1G69450 AT1G69450
fragaria_vesca	FvH4_4g30740 FvH4_4g30740
malus_domestica	MD13G1068300.v1.1 MD16G1067100.v1.1
prunus_persica	Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1
pyrus_communis	pycom13g06010 pycom16g05850
rosa_chinensis	RchiOBHm_Chr4g0439131
rosa_laevigata	RLG00000006295
rosa_multiflora	Rmu_sc0002236.1_g000001 Rmu_sc0005346.1_g000005 Rmu_sc0027506.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380120
rosa_rugosa	Rorug04G0315900 Rorug04G0315900
rosa_samantha	Rh4AG366800 Rh4BG378300 Rh4CG392400 Rh4CG392500 Rh4DG372900
rosa_wichuraiana	Rw0G007500 Rw0G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1001
AatII	GACGTC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	860
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	2 cut(s)	118, 233
AciI	CCGC	6 cut(s)	116, 128, 135, 233, 265, 864
AclI	AACGTT	1 cut(s)	697
AclWI	GGATC	1 cut(s)	668
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	599
AcyI	GRCGYC	3 cut(s)	23, 236, 249
AdeI	CACNNNGTG	1 cut(s)	590
AfaI	GTAC	3 cut(s)	140, 706, 1047
AflII	CTTAAG	1 cut(s)	1069
AgsI	TTSAA	5 cut(s)	160, 414, 667, 847, 1055
AjnI	CCWGG	1 cut(s)	203
AjuI	GAANNNNNNNTTGG	2 cut(s)	770, 802
AloI	GAACNNNNNNTCC	2 cut(s)	807, 839
AluBI	AGCT	4 cut(s)	211, 830, 923, 991
AluI	AGCT	4 cut(s)	211, 830, 923, 991
Alw26I	GTCTC	3 cut(s)	13, 855, 1064
AlwI	GGATC	1 cut(s)	668
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	4 cut(s)	30, 43, 201, 947
ApeKI	GCWGC	4 cut(s)	325, 501, 525, 830
Asp700I	GAANNNNTTC	1 cut(s)	822
AspLEI	GCGC	2 cut(s)	16, 355
AspS9I	GGNCC	4 cut(s)	201, 444, 722, 948
AsuHPI	GGTGA	4 cut(s)	31, 205, 346, 478
AsuII	TTCGAA	1 cut(s)	973
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	2 cut(s)	444, 722
BalI	TGGCCA	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	860
BarI	GAAGNNNNNNTAC	2 cut(s)	353, 385
BauI	CACGAG	1 cut(s)	1102
BbvI	GCAGC	4 cut(s)	312, 513, 537, 817
BccI	CCATC	4 cut(s)	83, 497, 900, 972
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	205
BcoDI	GTCTC	3 cut(s)	13, 855, 1064
BfaI	CTAG	2 cut(s)	164, 494
BfmI	CTRYAG	1 cut(s)	516
BfoI	RGCGCY	1 cut(s)	17
BfrI	CTTAAG	1 cut(s)	1069
BisI	GCNGC	7 cut(s)	234, 266, 326, 502, 526, 831, 864
BlsI	GCNGC	7 cut(s)	235, 267, 327, 503, 527, 832, 865
Bme1390I	CCNGG	1 cut(s)	205
Bme18I	GGWCC	2 cut(s)	444, 722
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	4 cut(s)	201, 444, 722, 948
BmiI	GGNNCC	3 cut(s)	194, 724, 862
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	3 cut(s)	340, 470, 622
Bpu14I	TTCGAA	1 cut(s)	973
BpuEI	CTTGAG	1 cut(s)	782
BsaBI	GATNNNNATC	1 cut(s)	982
BsaHI	GRCGYC	3 cut(s)	23, 236, 249
BsaI	GGTCTC	1 cut(s)	1064
BsaJI	CCNNGG	4 cut(s)	102, 216, 252, 726
BsaWI	WCCGGW	2 cut(s)	331, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	807, 837
Bse1I	ACTGG	4 cut(s)	33, 447, 950, 1075
Bse8I	GATNNNNATC	1 cut(s)	982
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	4 cut(s)	102, 216, 252, 726
BseGI	GGATG	5 cut(s)	75, 403, 461, 489, 565
BseJI	GATNNNNATC	1 cut(s)	982
BseMII	CTCAG	2 cut(s)	71, 275
BseNI	ACTGG	4 cut(s)	33, 447, 950, 1075
BseRI	GAGGAG	1 cut(s)	788
BseXI	GCAGC	4 cut(s)	312, 513, 537, 817
Bsh1236I	CGCG	2 cut(s)	118, 233
BshFI	GGCC	4 cut(s)	32, 45, 203, 949
BshNI	GGYRCC	1 cut(s)	860
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	5 cut(s)	42, 303, 332, 345, 702
BsmAI	GTCTC	3 cut(s)	13, 855, 1064
BsmBI	CGTCTC	1 cut(s)	13
BsmI	GAATGC	3 cut(s)	504, 1011, 1107
BsnI	GGCC	4 cut(s)	32, 45, 203, 949
Bso31I	GGTCTC	1 cut(s)	1064
BsoBI	CYCGRG	1 cut(s)	356
Bsp119I	TTCGAA	1 cut(s)	973
Bsp143I	GATC	3 cut(s)	376, 673, 742
BspACI	CCGC	6 cut(s)	116, 128, 135, 233, 265, 864
BspANI	GGCC	4 cut(s)	32, 45, 203, 949
BspCNI	CTCAG	2 cut(s)	72, 276
BspFNI	CGCG	2 cut(s)	118, 233
BspLI	GGNNCC	3 cut(s)	194, 724, 862
BspPI	GGATC	1 cut(s)	668
BspT104I	TTCGAA	1 cut(s)	973
BspT107I	GGYRCC	1 cut(s)	860
BspTI	CTTAAG	1 cut(s)	1069
BspTNI	GGTCTC	1 cut(s)	1064
BsrI	ACTGG	4 cut(s)	33, 447, 950, 1075
BssECI	CCNNGG	4 cut(s)	102, 216, 252, 726
BssMI	GATC	3 cut(s)	376, 673, 742
BssNI	GRCGYC	3 cut(s)	23, 236, 249
BssSI	CACGAG	1 cut(s)	1102
BssT1I	CCWWGG	1 cut(s)	726
Bst2BI	CACGAG	1 cut(s)	1102
Bst2UI	CCWGG	1 cut(s)	205
Bst6I	CTCTTC	2 cut(s)	62, 140
BstACI	GRCGYC	3 cut(s)	23, 236, 249
BstAFI	CTTAAG	1 cut(s)	1069
BstBI	TTCGAA	1 cut(s)	973
BstC8I	GCNNGC	3 cut(s)	231, 921, 1009
BstDEI	CTNAG	3 cut(s)	80, 284, 987
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	5 cut(s)	75, 403, 461, 489, 565
BstFNI	CGCG	2 cut(s)	118, 233
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	2 cut(s)	16, 355
BstKTI	GATC	3 cut(s)	379, 676, 745
BstMAI	GTCTC	3 cut(s)	13, 855, 1064
BstMBI	GATC	3 cut(s)	376, 673, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	869
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	203
BstSFI	CTRYAG	1 cut(s)	516
BstUI	CGCG	2 cut(s)	118, 233
BstV1I	GCAGC	4 cut(s)	312, 513, 537, 817
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
BsuRI	GGCC	4 cut(s)	32, 45, 203, 949
BtgI	CCRYGG	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	363
BtsCI	GGATG	5 cut(s)	75, 403, 461, 489, 565
BtsIMutI	CAGTG	2 cut(s)	26, 538
Cac8I	GCNNGC	3 cut(s)	231, 921, 1009
CfoI	GCGC	2 cut(s)	16, 355
Cfr13I	GGNCC	4 cut(s)	201, 444, 722, 948
CseI	GACGC	4 cut(s)	225, 257, 517, 766
Csp6I	GTAC	3 cut(s)	139, 705, 1046
CviAII	CATG	2 cut(s)	935, 1117
CviQI	GTAC	3 cut(s)	139, 705, 1046
DdeI	CTNAG	3 cut(s)	80, 284, 987
DpnI	GATC	3 cut(s)	378, 675, 744
DpnII	GATC	3 cut(s)	376, 673, 742
DraIII	CACNNNGTG	1 cut(s)	590
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	62, 140
EarI	CTCTTC	2 cut(s)	62, 140
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	726
Eco31I	GGTCTC	1 cut(s)	1064
Eco32I	GATATC	1 cut(s)	984
Eco47I	GGWCC	2 cut(s)	444, 722
Eco57I	CTGAAG	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	984
EcoT14I	CCWWGG	1 cut(s)	726
ErhI	CCWWGG	1 cut(s)	726
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	2 cut(s)	938, 1120
FatI	CATG	2 cut(s)	934, 1116
FauI	CCCGC	1 cut(s)	128
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	7 cut(s)	234, 266, 326, 502, 526, 831, 864
FokI	GGATG	5 cut(s)	62, 410, 448, 476, 552
Fsp4HI	GCNGC	7 cut(s)	234, 266, 326, 502, 526, 831, 864
FspBI	CTAG	2 cut(s)	164, 494
GlaI	GCGC	2 cut(s)	15, 354
GluI	GCNGC	7 cut(s)	234, 266, 326, 502, 526, 831, 864
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	4 cut(s)	32, 45, 203, 949
HapII	CCGG	5 cut(s)	42, 303, 332, 345, 702
HgaI	GACGC	4 cut(s)	225, 257, 517, 766
HhaI	GCGC	2 cut(s)	16, 355
Hin1I	GRCGYC	3 cut(s)	23, 236, 249
Hin1II	CATG	2 cut(s)	938, 1120
Hin6I	GCGC	2 cut(s)	14, 353
HinP1I	GCGC	2 cut(s)	14, 353
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	3 cut(s)	175, 549, 619
HpaII	CCGG	5 cut(s)	42, 303, 332, 345, 702
HphI	GGTGA	4 cut(s)	31, 205, 346, 478
Hpy166II	GTNNAC	6 cut(s)	109, 337, 367, 486, 661, 943
Hpy188I	TCNGA	6 cut(s)	103, 197, 618, 673, 722, 799
Hpy188III	TCNNGA	5 cut(s)	79, 164, 185, 926, 1102
Hpy8I	GTNNAC	6 cut(s)	109, 337, 367, 486, 661, 943
Hpy99I	CGWCG	2 cut(s)	241, 603
HpyAV	CCTTC	7 cut(s)	125, 189, 192, 579, 853, 961, 1105
HpyCH4IV	ACGT	2 cut(s)	23, 697
HpyCH4V	TGCA	4 cut(s)	461, 635, 883, 1011
HpyF10VI	GCNNNNNNNGC	1 cut(s)	869
HpyF3I	CTNAG	3 cut(s)	80, 284, 987
HpySE526I	ACGT	2 cut(s)	23, 697
Hsp92I	GRCGYC	3 cut(s)	23, 236, 249
Hsp92II	CATG	2 cut(s)	938, 1120
HspAI	GCGC	2 cut(s)	14, 353
Kzo9I	GATC	3 cut(s)	376, 673, 742
LmnI	GCTCC	5 cut(s)	198, 347, 522, 790, 928
Lsp1109I	GCAGC	4 cut(s)	312, 513, 537, 817
LweI	GCATC	3 cut(s)	340, 470, 622
MaeI	CTAG	2 cut(s)	164, 494
MaeII	ACGT	2 cut(s)	23, 697
MaeIII	GTNAC	4 cut(s)	19, 24, 582, 910
MalI	GATC	3 cut(s)	378, 675, 744
MboI	GATC	3 cut(s)	376, 673, 742
MboII	GAAGA	6 cut(s)	49, 52, 157, 830, 987, 1007
MfeI	CAATTG	1 cut(s)	867
MflI	RGATCY	1 cut(s)	673
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	5 cut(s)	274, 641, 867, 1002, 1023
MluNI	TGGCCA	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	1059
Mox20I	TGGCCA	1 cut(s)	32
MroXI	GAANNNNTTC	1 cut(s)	822
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	2 cut(s)	732, 1070
Msp20I	TGGCCA	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	1069
MspI	CCGG	5 cut(s)	42, 303, 332, 345, 702
MspR9I	CCNGG	1 cut(s)	205
MunI	CAATTG	1 cut(s)	867
Mva1269I	GAATGC	3 cut(s)	504, 1011, 1107
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	2 cut(s)	118, 233
MwoI	GCNNNNNNNGC	1 cut(s)	869
NdeII	GATC	3 cut(s)	376, 673, 742
NlaIII	CATG	2 cut(s)	938, 1120
NlaIV	GGNNCC	3 cut(s)	194, 724, 862
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	4 cut(s)	19, 24, 582, 910
NspV	TTCGAA	1 cut(s)	973
PaeR7I	CTCGAG	1 cut(s)	356
PctI	GAATGC	3 cut(s)	504, 1011, 1107
PdmI	GAANNNNTTC	1 cut(s)	822
PfeI	GAWTC	3 cut(s)	175, 549, 619
PkrI	GCNGC	7 cut(s)	235, 267, 327, 503, 527, 832, 865
PsiI	TTATAA	1 cut(s)	1001
Psp1406I	AACGTT	1 cut(s)	697
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	3 cut(s)	194, 724, 862
PspPI	GGNCC	4 cut(s)	201, 444, 722, 948
PspXI	VCTCGAGB	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	673
RsaI	GTAC	3 cut(s)	140, 706, 1047
RsaNI	GTAC	3 cut(s)	139, 705, 1046
SaqAI	TTAA	2 cut(s)	732, 1070
SatI	GCNGC	7 cut(s)	234, 266, 326, 502, 526, 831, 864
Sau3AI	GATC	3 cut(s)	376, 673, 742
Sau96I	GGNCC	4 cut(s)	201, 444, 722, 948
ScrFI	CCNGG	1 cut(s)	205
SfaNI	GCATC	3 cut(s)	340, 470, 622
SfcI	CTRYAG	1 cut(s)	516
Sfr274I	CTCGAG	1 cut(s)	356
SfuI	TTCGAA	1 cut(s)	973
SinI	GGWCC	2 cut(s)	444, 722
SlaI	CTCGAG	1 cut(s)	356
SmlI	CTYRAG	3 cut(s)	356, 761, 1069
SmoI	CTYRAG	3 cut(s)	356, 761, 1069
Sse9I	AATT	5 cut(s)	274, 641, 867, 1002, 1023
SsiI	CCGC	6 cut(s)	116, 128, 135, 233, 265, 864
SspMI	CTAG	2 cut(s)	164, 494
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	726
TaiI	ACGT	2 cut(s)	26, 700
TaqI	TCGA	5 cut(s)	357, 601, 826, 890, 973
TasI	AATT	5 cut(s)	274, 641, 867, 1002, 1023
TatI	WGTACW	1 cut(s)	1045
TauI	GCSGC	3 cut(s)	236, 268, 866
TfiI	GAWTC	3 cut(s)	175, 549, 619
Tru1I	TTAA	2 cut(s)	732, 1070
Tru9I	TTAA	2 cut(s)	732, 1070
TscAI	CASTG	2 cut(s)	33, 538
TseFI	GTSAC	4 cut(s)	19, 24, 582, 910
TseI	GCWGC	4 cut(s)	325, 501, 525, 830
Tsp45I	GTSAC	4 cut(s)	19, 24, 582, 910
TspDTI	ATGAA	2 cut(s)	432, 958
TspRI	CASTG	2 cut(s)	33, 538
Vha464I	CTTAAG	1 cut(s)	1069
VpaK11BI	GGWCC	2 cut(s)	444, 722
XbaI	TCTAGA	1 cut(s)	163
XhoI	CTCGAG	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	822
XspI	CTAG	2 cut(s)	164, 494
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.