Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012147

Physical Location & Seq

Genomic Coordinates Forward (+)

26182156 .. 26183546

Gene Structure 1391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGATTTGTCTTCCAAACCACAACAACAACTTCTAAACTCTCTTCCCATCGCCGGAGAACTAACTGTCACCGGAGAAATGGGTGTTTGTTACAAAGAGTGTTTGAAAAACCACGCGGCTAATCTCGGCGGCCATGCTCTCGACGGTTGCGGCGAGTTTATGCCGAGTCCCACGGCTACTTCCACCGATCCTTCTTCTCTCCGTTGCGCTGCTTGTGGCTGCCACCGTAACTTCCACCGCCGTGACCCTTCCGAGAATCTCAACTTCCTCACCGCGCCTCCGATTTCTTCTCCCTCCGGCACTGAGTCGCCGCCGTCTCGTCACGTGTCTTCTCCTGTTCCTTGCTCTTACTACACCTCAGCTCCTCCACATCACGTGATTCTCTCTCTCAGCTCCGGTTTCCCTGGACCGTCAGATCAAGATCCAACGGTGGTTAGGTCAGAGAACAGTTCAAGAGGAGCAATGAGGAAACGAACAAGAACCAAATTCACGCCGGAGCAGAAGATCAAGATGAGAGCCTTCGCAGAGAAAGCTGGTTGGAAAATCAACGGATGTGATGAAAAGTCGGTGAGAGAGTTTTGTAACGAAGTTGGGATTGAGAGAGGAGTTCTTAAAGTGTGGATGCATAACAACAAGTACTCACTTCTCAATGGCAAGATCAGAGAGATCGAACATGGCCTGTGTCTGAACACTCACAGCAATGATGGTGATGGGTCTTCATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

242

Amino Acids

26.28

Weight (kDa)

8.32

Isoelectric Point (pI)

64.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	29 - 82	7.4e-28	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69600 AT5G60480
fragaria_vesca	FvH4_4g31350
malus_domestica	MD13G1072300.v1.1 MD16G1072800.v1.1
prunus_persica	Prupe.1G274700_v2.0.a1
pyrus_communis	pycom13g06480 pycom16g06310
rosa_chinensis	RchiOBHm_Chr4g0439861
rosa_laevigata	RLG00000006232
rosa_multiflora	Rmu_co8191176.1_g000001 Rmu_sc0006473.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380760
rosa_rugosa	Rorug04G0321800
rosa_samantha	Rh4AG372800 Rh4BG385200 Rh4CG399700 Rh4DG379400
rosa_wichuraiana	Rw4G031870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	116, 275
AciI	CCGC	6 cut(s)	116, 129, 150, 238, 273, 311
AclWI	GGATC	2 cut(s)	182, 416
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	485
AcvI	CACGTG	2 cut(s)	325, 376
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	1 cut(s)	53
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	106, 453
AjnI	CCWGG	1 cut(s)	403
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	362, 393, 533
AluI	AGCT	3 cut(s)	362, 393, 533
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	182, 416
AoxI	GGCC	2 cut(s)	130, 676
ApeKI	GCWGC	2 cut(s)	209, 219
ApoI	RAATTY	1 cut(s)	485
AspLEI	GCGC	2 cut(s)	209, 277
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	4 cut(s)	61, 262, 580, 719
AvaII	GGWCC	1 cut(s)	407
BbrPI	CACGTG	2 cut(s)	325, 376
BbsI	GAAGAC	3 cut(s)	3, 321, 708
BbvCI	CCTCAGC	1 cut(s)	358
BbvI	GCAGC	2 cut(s)	196, 206
BccI	CCATC	3 cut(s)	56, 698, 704
BceAI	ACGGC	3 cut(s)	189, 225, 298
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	321
BisI	GCNGC	6 cut(s)	117, 130, 151, 210, 220, 311
BlsI	GCNGC	6 cut(s)	118, 131, 152, 211, 221, 312
BmcAI	AGTACT	1 cut(s)	638
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	407
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	612
BpiI	GAAGAC	3 cut(s)	3, 321, 708
Bpu10I	CCTNAGC	1 cut(s)	358
BsaAI	YACGTR	2 cut(s)	325, 376
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	171, 403
BsaWI	WCCGGW	2 cut(s)	71, 395
BsaXI	ACNNNNNCTCC	4 cut(s)	262, 292, 346, 376
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse3DI	GCAATG	2 cut(s)	468, 706
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	171, 403
BseGI	GGATG	2 cut(s)	557, 627
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	2 cut(s)	468, 706
BseMII	CTCAG	3 cut(s)	294, 372, 403
BseRI	GAGGAG	3 cut(s)	354, 471, 618
BseXI	GCAGC	2 cut(s)	196, 206
Bsh1236I	CGCG	2 cut(s)	116, 275
BshFI	GGCC	2 cut(s)	132, 678
BsiSI	CCGG	5 cut(s)	54, 72, 297, 396, 494
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	321
BsmBI	CGTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	153
BsnI	GGCC	2 cut(s)	132, 678
Bsp143I	GATC	6 cut(s)	187, 415, 421, 504, 657, 666
BspACI	CCGC	6 cut(s)	116, 129, 150, 238, 273, 311
BspANI	GGCC	2 cut(s)	132, 678
BspCNI	CTCAG	3 cut(s)	295, 371, 402
BspFNI	CGCG	2 cut(s)	116, 275
BspPI	GGATC	2 cut(s)	182, 416
BsrDI	GCAATG	2 cut(s)	468, 706
BssECI	CCNNGG	2 cut(s)	171, 403
BssMI	GATC	6 cut(s)	187, 415, 421, 504, 657, 666
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	6 cut(s)	67, 146, 227, 411, 430, 449
Bst6I	CTCTTC	1 cut(s)	48
BstBAI	YACGTR	2 cut(s)	325, 376
BstDEI	CTNAG	3 cut(s)	303, 358, 389
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	557, 627
BstFNI	CGCG	2 cut(s)	116, 275
BstHHI	GCGC	2 cut(s)	209, 277
BstKTI	GATC	6 cut(s)	190, 418, 424, 507, 660, 669
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	6 cut(s)	187, 415, 421, 504, 657, 666
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	403
BstUI	CGCG	2 cut(s)	116, 275
BstV1I	GCAGC	2 cut(s)	196, 206
BstV2I	GAAGAC	3 cut(s)	3, 321, 708
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	132, 678
BtgI	CCRYGG	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	557, 627
BtsIMutI	CAGTG	1 cut(s)	300
CfoI	GCGC	2 cut(s)	209, 277
Cfr13I	GGNCC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	2 cut(s)	134, 674
CviJI	RGCY	9 cut(s)	119, 132, 176, 219, 362, 393, 518, 533, 678
CviKI_1	RGCY	9 cut(s)	119, 132, 176, 219, 362, 393, 518, 533, 678
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	3 cut(s)	303, 358, 389
DpnI	GATC	6 cut(s)	189, 417, 423, 506, 659, 668
DpnII	GATC	6 cut(s)	187, 415, 421, 504, 657, 666
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	407
Eco72I	CACGTG	2 cut(s)	325, 376
EcoRII	CCWGG	1 cut(s)	403
EcoT22I	ATGCAT	1 cut(s)	627
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	2 cut(s)	137, 677
FaiI	YATR	4 cut(s)	135, 161, 627, 675
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	2 cut(s)	133, 673
Fnu4HI	GCNGC	6 cut(s)	117, 130, 151, 210, 220, 311
FokI	GGATG	2 cut(s)	564, 634
Fsp4HI	GCNGC	6 cut(s)	117, 130, 151, 210, 220, 311
GlaI	GCGC	2 cut(s)	208, 276
GluI	GCNGC	6 cut(s)	117, 130, 151, 210, 220, 311
HaeIII	GGCC	2 cut(s)	132, 678
HapII	CCGG	5 cut(s)	54, 72, 297, 396, 494
HhaI	GCGC	2 cut(s)	209, 277
Hin1II	CATG	2 cut(s)	137, 677
Hin6I	GCGC	2 cut(s)	207, 275
HinP1I	GCGC	2 cut(s)	207, 275
HinfI	GANTC	4 cut(s)	166, 256, 305, 379
HpaII	CCGG	5 cut(s)	54, 72, 297, 396, 494
HphI	GGTGA	4 cut(s)	61, 262, 580, 719
Hpy188I	TCNGA	6 cut(s)	253, 282, 415, 442, 662, 687
Hpy188III	TCNNGA	5 cut(s)	140, 419, 453, 508, 726
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	3 cut(s)	201, 258, 529
HpyCH4III	ACNGT	6 cut(s)	67, 146, 227, 411, 430, 449
HpyCH4IV	ACGT	2 cut(s)	324, 375
HpyCH4V	TGCA	1 cut(s)	625
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	3 cut(s)	303, 358, 389
HpySE526I	ACGT	2 cut(s)	324, 375
Hsp92II	CATG	2 cut(s)	137, 677
HspAI	GCGC	2 cut(s)	207, 275
Kzo9I	GATC	6 cut(s)	187, 415, 421, 504, 657, 666
LmnI	GCTCC	4 cut(s)	367, 398, 458, 496
Lsp1109I	GCAGC	2 cut(s)	196, 206
LweI	GCATC	1 cut(s)	612
MaeII	ACGT	2 cut(s)	324, 375
MaeIII	GTNAC	6 cut(s)	67, 89, 227, 242, 320, 581
MalI	GATC	6 cut(s)	189, 417, 423, 506, 659, 668
MboI	GATC	6 cut(s)	187, 415, 421, 504, 657, 666
MboII	GAAGA	8 cut(s)	3, 35, 186, 279, 321, 514, 708, 714
MflI	RGATCY	1 cut(s)	421
MluCI	AATT	1 cut(s)	485
MlyI	GAGTC	2 cut(s)	175, 314
MmeI	TCCRAC	2 cut(s)	449, 518
MnlI	CCTC	8 cut(s)	278, 288, 304, 367, 375, 449, 459, 596
Mph1103I	ATGCAT	1 cut(s)	627
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	2 cut(s)	240, 699
MspI	CCGG	5 cut(s)	54, 72, 297, 396, 494
MspR9I	CCNGG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	2 cut(s)	116, 275
MwoI	GCNNNNNNNGC	1 cut(s)	530
NdeII	GATC	6 cut(s)	187, 415, 421, 504, 657, 666
NlaIII	CATG	2 cut(s)	137, 677
NmeAIII	GCCGAG	2 cut(s)	105, 189
NmuCI	GTSAC	3 cut(s)	67, 242, 320
NsiI	ATGCAT	1 cut(s)	627
OliI	CACNNNNGTG	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	256, 379
PkrI	GCNGC	6 cut(s)	118, 131, 152, 211, 221, 312
PleI	GAGTC	2 cut(s)	174, 313
PmaCI	CACGTG	2 cut(s)	325, 376
PmlI	CACGTG	2 cut(s)	325, 376
PpsI	GAGTC	2 cut(s)	174, 313
Ppu21I	YACGTR	2 cut(s)	325, 376
Psp6I	CCWGG	1 cut(s)	403
PspCI	CACGTG	2 cut(s)	325, 376
PspGI	CCWGG	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
RseI	CAYNNNNRTG	2 cut(s)	240, 699
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	6 cut(s)	117, 130, 151, 210, 220, 311
Sau3AI	GATC	6 cut(s)	187, 415, 421, 504, 657, 666
Sau96I	GGNCC	1 cut(s)	407
ScaI	AGTACT	1 cut(s)	638
SchI	GAGTC	2 cut(s)	175, 314
ScrFI	CCNGG	1 cut(s)	405
SetI	ASST	7 cut(s)	327, 359, 364, 378, 395, 440, 535
SfaNI	GCATC	1 cut(s)	612
SinI	GGWCC	1 cut(s)	407
SmiMI	CAYNNNNRTG	2 cut(s)	240, 699
Sse9I	AATT	1 cut(s)	485
SsiI	CCGC	6 cut(s)	116, 129, 150, 238, 273, 311
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	6 cut(s)	67, 146, 227, 411, 430, 449
TaiI	ACGT	2 cut(s)	327, 378
TaqI	TCGA	2 cut(s)	141, 669
TasI	AATT	1 cut(s)	485
TatI	WGTACW	1 cut(s)	636
TauI	GCSGC	4 cut(s)	119, 132, 153, 313
TfiI	GAWTC	2 cut(s)	256, 379
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	3 cut(s)	67, 242, 320
TseI	GCWGC	2 cut(s)	209, 219
Tsp45I	GTSAC	3 cut(s)	67, 242, 320
TspDTI	ATGAA	2 cut(s)	573, 708
TspGWI	ACGGA	2 cut(s)	191, 564
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	1 cut(s)	485
ZrmI	AGTACT	1 cut(s)	638
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.