Rh4CG399700

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0012147
Physical Location & Seq
Forward (+)
64850310 .. 64851341
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG399700.1

Sequence Viewer

Length: 1032 bp
ATGGACTTTAAGCCCATTTCTACCACCGCCACCGCCACCATCAATACTCCAGATACAGACACTGAGCTCATCCCCACATCAGACCCCAAATCTGGCGCCTTTAGGTCCTTATCCTTCAACAACGGCCCACTCAAGCCCCACCACCCACTTCCTCCGCCGCCTCATACGGCGGTTGTGTACCGAGAATGTTTGAAGAACCACGCGGCCAGCCTCGGCGGCCACGCCCTCGACGGCTGCGGTGAGTTTTTCCCCAGCCCCATTTCCAACCCCGCCGACCCCACCTCGCTAAAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGACGCGCCTGACGAACGACGCGCGTTCACTCCTCCAAAGGCCCTTCTCGTCAGCCCTACTCCTCACCACCGCCTTCTTCCTCCGCCGCCAGCTCAGCACAGCTCAAGCCCAAGCCCAAGCCGGAGCACGAGCCCGGGCCCAAGCACCACGTTGAGCCCGCACTCTCCGCCGCCGGTCTCGCACGTGCCGCCCTCCTTCTTCGGCACACCCTCCCAGATGCTCCTCGCCCTCAGCTCCGCCGCGTTTACCGCGCCACCACCGTCGGATGAGAAGGTCCGGAATCCGACGGCTGGGAAGACGGGGAGGAAGAGATCGAGGACCAAGTTCAGCCAGGAGCAGAAGGACAAGATGTTCTGTTTTGCTGACAAACTAGGCTGGAAACTGCAGAGGAGCGAAGAGAAGTTCGTCGAGGATTTCTGCGACGAGATTGGGATTGGTCGGAACGTTTTTAAGGTTTGGATGCATAACAACAAGCACCACATGATGAAGAAGCAGAGGTTGTTGTCGTCGGCCGGGTTGATCAATGACGGTGACGACGGCGGTGATGCCGGCGGAGGAGCTAGCTTTGATTCCACTGCTGAGGAGAACAACAACAACAACAATGTGAATGTCATTATCGACTCCCACAATGAAAGTAGCAGAGATCATCACCACCACCAAAGGTTTTATCTTTCCAACAATGGGTCCTCTTCTTCGTCTTGA

Protein Analysis

343

Amino Acids

37.27

Weight (kDa)

8.65

Isoelectric Point (pI)

64.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 58 - 111 2.8e-27 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69600 AT5G60480
fragaria_vesca FvH4_4g31350
malus_domestica MD13G1072300.v1.1 MD16G1072800.v1.1
prunus_persica Prupe.1G274700_v2.0.a1
pyrus_communis pycom13g06480 pycom16g06310
rosa_chinensis RchiOBHm_Chr4g0439861
rosa_laevigata RLG00000006232
rosa_multiflora Rmu_co8191176.1_g000001 Rmu_sc0006473.1_g000005
rosa_roxburghii Rroxscaffold_5G00380760
rosa_rugosa Rorug04G0321800
rosa_samantha Rh4AG372800 Rh4BG385200 Rh4CG399700 Rh4DG379400
rosa_wichuraiana Rw4G031870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 95
AccII CGCG 7 cut(s) 203, 330, 335, 351, 353, 572, 581
AccIII TCCGGA 1 cut(s) 606
AclI AACGTT 1 cut(s) 774
AcoI YGGCCR 3 cut(s) 204, 217, 840
AcvI CACGTG 1 cut(s) 514
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 3 cut(s) 92, 620, 1011
AgsI TTSAA 2 cut(s) 118, 193
AjnI CCWGG 1 cut(s) 660
AloI GAACNNNNNNTCC 2 cut(s) 665, 697
AluBI AGCT 6 cut(s) 67, 422, 432, 564, 890, 894
AluI AGCT 6 cut(s) 67, 422, 432, 564, 890, 894
Alw21I GWGCWC 2 cut(s) 69, 458
Alw26I GTCTC 1 cut(s) 511
AlwNI CAGNNNCTG 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 463
Aor13HI TCCGGA 1 cut(s) 606
AoxI GGCC 6 cut(s) 124, 204, 217, 369, 466, 840
ApaI GGGCCC 1 cut(s) 470
ApeKI GCWGC 2 cut(s) 234, 306
AspLEI GCGC 5 cut(s) 98, 296, 337, 353, 583
AspS9I GGNCC 8 cut(s) 105, 125, 370, 466, 467, 604, 648, 1014
AsuC2I CCSGG 3 cut(s) 464, 465, 844
AsuHPI GGTGA 5 cut(s) 251, 386, 872, 884, 971
AsuNHI GCTAGC 1 cut(s) 890
AvaI CYCGRG 1 cut(s) 463
AvaII GGWCC 4 cut(s) 105, 604, 648, 1014
BaeGI GKGCMC 1 cut(s) 470
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 4 cut(s) 69, 464, 470, 488
BauI CACGAG 1 cut(s) 457
BbrPI CACGTG 1 cut(s) 514
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 2 cut(s) 69, 458
BbvCI CCTCAGC 2 cut(s) 560, 909
BbvI GCAGC 2 cut(s) 221, 293
BccI CCATC 1 cut(s) 47
BceAI ACGGC 5 cut(s) 139, 183, 247, 633, 883
BciT130I CCWGG 1 cut(s) 662
BclI TGATCA 1 cut(s) 849
BcnI CCSGG 3 cut(s) 464, 465, 844
BcoDI GTCTC 1 cut(s) 511
BfaI CTAG 2 cut(s) 701, 891
BfmI CTRYAG 1 cut(s) 713
BfoI RGCGCY 1 cut(s) 99
BglI GCCNNNNNGGC 1 cut(s) 216
BlpI GCTNAGC 1 cut(s) 423
Bme1390I CCNGG 4 cut(s) 464, 465, 662, 844
Bme18I GGWCC 4 cut(s) 105, 604, 648, 1014
BmeT110I CYCGRG 1 cut(s) 463
BmgT120I GGNCC 8 cut(s) 105, 125, 370, 466, 467, 604, 648, 1014
BmiI GGNNCC 3 cut(s) 97, 468, 1015
BmrFI CCNGG 4 cut(s) 464, 465, 662, 844
BmsI GCATC 3 cut(s) 537, 780, 865
BmtI GCTAGC 1 cut(s) 894
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 1 cut(s) 33
Bpu10I CCTNAGC 2 cut(s) 560, 909
Bpu1102I GCTNAGC 1 cut(s) 423
BpuEI CTTGAG 2 cut(s) 116, 418
BpuMI CCSGG 3 cut(s) 464, 465, 844
BsaAI YACGTR 1 cut(s) 514
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 511
BsaJI CCNNGG 2 cut(s) 211, 463
BsaWI WCCGGW 1 cut(s) 606
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 620, 1011
Bse118I RCCGGY 2 cut(s) 502, 878
BseAI TCCGGA 1 cut(s) 606
BseBI CCWGG 1 cut(s) 662
BseDI CCNNGG 2 cut(s) 211, 463
BseGI GGATG 3 cut(s) 69, 601, 795
BseLI CCNNNNNNNGG 3 cut(s) 92, 620, 1011
BseMII CTCAG 4 cut(s) 54, 437, 574, 900
BseRI GAGGAG 6 cut(s) 351, 381, 542, 733, 900, 926
BseSI GKGCMC 1 cut(s) 470
BseX3I CGGCCG 1 cut(s) 840
BseXI GCAGC 2 cut(s) 221, 293
BseYI CCCAGC 2 cut(s) 251, 620
Bsh1236I CGCG 7 cut(s) 203, 330, 335, 351, 353, 572, 581
Bsh1285I CGRYCG 1 cut(s) 843
BshFI GGCC 6 cut(s) 126, 206, 219, 371, 468, 842
BshNI GGYRCC 1 cut(s) 95
BsiEI CGRYCG 1 cut(s) 843
BsiHKAI GWGCWC 2 cut(s) 69, 458
BsiHKCI CYCGRG 1 cut(s) 463
BsiSI CCGG 6 cut(s) 451, 464, 503, 607, 843, 879
BslI CCNNNNNNNGG 3 cut(s) 92, 620, 1011
BsmAI GTCTC 1 cut(s) 511
BsnI GGCC 6 cut(s) 126, 206, 219, 371, 468, 842
Bso31I GGTCTC 1 cut(s) 511
BsoBI CYCGRG 1 cut(s) 463
Bsp120I GGGCCC 1 cut(s) 466
Bsp1286I GDGCHC 5 cut(s) 69, 458, 464, 470, 488
Bsp13I TCCGGA 1 cut(s) 606
Bsp143I GATC 3 cut(s) 641, 849, 973
Bsp1720I GCTNAGC 1 cut(s) 423
BspANI GGCC 6 cut(s) 126, 206, 219, 371, 468, 842
BspCNI CTCAG 4 cut(s) 55, 436, 573, 901
BspEI TCCGGA 1 cut(s) 606
BspFNI CGCG 7 cut(s) 203, 330, 335, 351, 353, 572, 581
BspLI GGNNCC 3 cut(s) 97, 468, 1015
BspMAI CTGCAG 1 cut(s) 717
BspOI GCTAGC 1 cut(s) 894
BspT107I GGYRCC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 511
BsrFI RCCGGY 2 cut(s) 502, 878
BssAI RCCGGY 2 cut(s) 502, 878
BssECI CCNNGG 2 cut(s) 211, 463
BssMI GATC 3 cut(s) 641, 849, 973
BssNI GRCGYC 1 cut(s) 96
BssSI CACGAG 1 cut(s) 457
Bst2BI CACGAG 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 662
Bst4CI ACNGT 2 cut(s) 591, 860
Bst6I CTCTTC 3 cut(s) 632, 720, 1024
BstACI GRCGYC 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 514
BstC8I GCNNGC 6 cut(s) 208, 301, 420, 488, 880, 892
BstDEI CTNAG 4 cut(s) 63, 423, 560, 909
BstF5I GGATG 3 cut(s) 69, 601, 795
BstFNI CGCG 7 cut(s) 203, 330, 335, 351, 353, 572, 581
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 5 cut(s) 98, 296, 337, 353, 583
BstKTI GATC 3 cut(s) 644, 852, 976
BstMAI GTCTC 1 cut(s) 511
BstMBI GATC 3 cut(s) 641, 849, 973
BstMCI CGRYCG 1 cut(s) 843
BstMWI GCNNNNNNNGC 8 cut(s) 216, 300, 312, 424, 496, 508, 517, 578
BstNI CCWGG 1 cut(s) 662
BstSCI CCNGG 4 cut(s) 462, 463, 660, 842
BstSFI CTRYAG 1 cut(s) 713
BstSLI GKGCMC 1 cut(s) 470
BstUI CGCG 7 cut(s) 203, 330, 335, 351, 353, 572, 581
BstV1I GCAGC 2 cut(s) 221, 293
BstV2I GAAGAC 1 cut(s) 632
BstZI CGGCCG 1 cut(s) 840
BsuRI GGCC 6 cut(s) 126, 206, 219, 371, 468, 842
BtsCI GGATG 3 cut(s) 69, 601, 795
BtsI GCAGTG 1 cut(s) 903
BtsIMutI CAGTG 2 cut(s) 60, 903
Cac8I GCNNGC 6 cut(s) 208, 301, 420, 488, 880, 892
CaiI CAGNNNCTG 1 cut(s) 62
CfoI GCGC 5 cut(s) 98, 296, 337, 353, 583
Cfr10I RCCGGY 2 cut(s) 502, 878
Cfr13I GGNCC 8 cut(s) 105, 125, 370, 466, 467, 604, 648, 1014
Cfr9I CCCGGG 1 cut(s) 463
CseI GACGC 2 cut(s) 341, 357
Csp6I GTAC 1 cut(s) 178
CviAII CATG 1 cut(s) 811
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 4 cut(s) 63, 423, 560, 909
DinI GGCGCC 1 cut(s) 97
DpnI GATC 3 cut(s) 643, 851, 975
DpnII GATC 3 cut(s) 641, 849, 973
EaeI YGGCCR 3 cut(s) 204, 217, 840
EagI CGGCCG 1 cut(s) 840
Eam1104I CTCTTC 3 cut(s) 632, 720, 1024
EarI CTCTTC 3 cut(s) 632, 720, 1024
EciI GGCGGA 5 cut(s) 144, 402, 486, 556, 897
Ecl136II GAGCTC 1 cut(s) 67
EclXI CGGCCG 1 cut(s) 840
Eco24I GRGCYC 4 cut(s) 69, 464, 470, 488
Eco31I GGTCTC 1 cut(s) 511
Eco47I GGWCC 4 cut(s) 105, 604, 648, 1014
Eco52I CGGCCG 1 cut(s) 840
Eco53kI GAGCTC 1 cut(s) 67
Eco72I CACGTG 1 cut(s) 514
Eco88I CYCGRG 1 cut(s) 463
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 3 cut(s) 105, 370, 1014
EcoRII CCWGG 1 cut(s) 660
EcoT22I ATGCAT 1 cut(s) 795
EcoT38I GRGCYC 4 cut(s) 69, 464, 470, 488
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
FaeI CATG 1 cut(s) 814
FaiI YATR 3 cut(s) 165, 795, 812
FatI CATG 1 cut(s) 810
FauI CCCGC 2 cut(s) 277, 495
FbaI TGATCA 1 cut(s) 849
FokI GGATG 3 cut(s) 56, 608, 802
FriOI GRGCYC 4 cut(s) 69, 464, 470, 488
FspBI CTAG 2 cut(s) 701, 891
GlaI GCGC 5 cut(s) 97, 295, 336, 352, 582
GsaI CCCAGC 2 cut(s) 255, 624
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 6 cut(s) 126, 206, 219, 371, 468, 842
HapII CCGG 6 cut(s) 451, 464, 503, 607, 843, 879
HgaI GACGC 2 cut(s) 341, 357
HhaI GCGC 5 cut(s) 98, 296, 337, 353, 583
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 1 cut(s) 814
Hin6I GCGC 5 cut(s) 96, 294, 335, 351, 581
HinP1I GCGC 5 cut(s) 96, 294, 335, 351, 581
HinfI GANTC 3 cut(s) 610, 899, 950
HpaII CCGG 6 cut(s) 451, 464, 503, 607, 843, 879
HphI GGTGA 5 cut(s) 251, 386, 872, 884, 971
Hpy166II GTNNAC 3 cut(s) 178, 357, 576
Hpy188I TCNGA 4 cut(s) 82, 595, 615, 771
Hpy188III TCNNGA 3 cut(s) 50, 607, 1029
Hpy8I GTNNAC 3 cut(s) 178, 357, 576
Hpy99I CGWCG 9 cut(s) 233, 335, 351, 595, 619, 740, 755, 841, 869
HpyAV CCTTC 6 cut(s) 124, 383, 413, 535, 595, 664
HpyCH4III ACNGT 2 cut(s) 591, 860
HpyCH4IV ACGT 3 cut(s) 479, 513, 774
HpyCH4V TGCA 2 cut(s) 715, 793
HpyF10VI GCNNNNNNNGC 8 cut(s) 216, 300, 312, 424, 496, 508, 517, 578
HpyF3I CTNAG 4 cut(s) 63, 423, 560, 909
HpySE526I ACGT 3 cut(s) 479, 513, 774
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 814
HspAI GCGC 5 cut(s) 96, 294, 335, 351, 581
KasI GGCGCC 1 cut(s) 95
Kpn2I TCCGGA 1 cut(s) 606
KroI GCCGGC 1 cut(s) 878
KroNI GCCGGC 1 cut(s) 880
Ksp22I TGATCA 1 cut(s) 849
Kzo9I GATC 3 cut(s) 641, 849, 973
LmnI GCTCC 6 cut(s) 453, 555, 569, 664, 720, 887
Lsp1109I GCAGC 2 cut(s) 221, 293
LweI GCATC 3 cut(s) 537, 780, 865
MaeI CTAG 2 cut(s) 701, 891
MaeII ACGT 3 cut(s) 479, 513, 774
MaeIII GTNAC 1 cut(s) 860
MalI GATC 3 cut(s) 643, 851, 975
MboI GATC 3 cut(s) 641, 849, 973
MboII GAAGA 9 cut(s) 205, 398, 520, 637, 649, 737, 829, 1011, 1014
MhlI GDGCHC 5 cut(s) 69, 458, 464, 470, 488
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 1 cut(s) 944
MmeI TCCRAC 5 cut(s) 288, 573, 638, 749, 1029
Mph1103I ATGCAT 1 cut(s) 795
MroI TCCGGA 1 cut(s) 606
MroNI GCCGGC 1 cut(s) 878
MseI TTAA 2 cut(s) 9, 780
MspI CCGG 6 cut(s) 451, 464, 503, 607, 843, 879
MspR9I CCNGG 4 cut(s) 464, 465, 662, 844
MvaI CCWGG 1 cut(s) 662
MvnI CGCG 7 cut(s) 203, 330, 335, 351, 353, 572, 581
MwoI GCNNNNNNNGC 8 cut(s) 216, 300, 312, 424, 496, 508, 517, 578
NaeI GCCGGC 1 cut(s) 880
NarI GGCGCC 1 cut(s) 96
NciI CCSGG 3 cut(s) 464, 465, 844
NdeII GATC 3 cut(s) 641, 849, 973
NgoMIV GCCGGC 1 cut(s) 878
NheI GCTAGC 1 cut(s) 890
NlaIII CATG 1 cut(s) 814
NlaIV GGNNCC 3 cut(s) 97, 468, 1015
NmeAIII GCCGAG 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 860
NsiI ATGCAT 1 cut(s) 795
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PdiI GCCGGC 1 cut(s) 880
PfeI GAWTC 2 cut(s) 610, 899
PleI GAGTC 1 cut(s) 944
PluTI GGCGCC 1 cut(s) 99
PmaCI CACGTG 1 cut(s) 514
PmlI CACGTG 1 cut(s) 514
PpsI GAGTC 1 cut(s) 944
Ppu21I YACGTR 1 cut(s) 514
PpuMI RGGWCCY 2 cut(s) 105, 1014
Psp124BI GAGCTC 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 774
Psp5II RGGWCCY 2 cut(s) 105, 1014
Psp6I CCWGG 1 cut(s) 660
PspCI CACGTG 1 cut(s) 514
PspFI CCCAGC 2 cut(s) 251, 620
PspGI CCWGG 1 cut(s) 660
PspN4I GGNNCC 3 cut(s) 97, 468, 1015
PspOMI GGGCCC 1 cut(s) 466
PspPI GGNCC 8 cut(s) 105, 125, 370, 466, 467, 604, 648, 1014
PspPPI RGGWCCY 2 cut(s) 105, 1014
PstI CTGCAG 1 cut(s) 717
PstNI CAGNNNCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 9, 780
Sau3AI GATC 3 cut(s) 641, 849, 973
Sau96I GGNCC 8 cut(s) 105, 125, 370, 466, 467, 604, 648, 1014
SchI GAGTC 1 cut(s) 944
ScrFI CCNGG 4 cut(s) 464, 465, 662, 844
SduI GDGCHC 5 cut(s) 69, 458, 464, 470, 488
SfaNI GCATC 3 cut(s) 537, 780, 865
SfcI CTRYAG 1 cut(s) 713
SfoI GGCGCC 1 cut(s) 97
SinI GGWCC 4 cut(s) 105, 604, 648, 1014
SmaI CCCGGG 1 cut(s) 465
SmlI CTYRAG 2 cut(s) 131, 433
SmoI CTYRAG 2 cut(s) 131, 433
SrfI GCCCGGGC 1 cut(s) 465
SspDI GGCGCC 1 cut(s) 95
SspMI CTAG 2 cut(s) 701, 891
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 4 cut(s) 462, 463, 660, 842
TaaI ACNGT 2 cut(s) 591, 860
TaiI ACGT 3 cut(s) 482, 516, 777
TaqI TCGA 4 cut(s) 228, 644, 738, 948
TfiI GAWTC 2 cut(s) 610, 899
Tru1I TTAA 2 cut(s) 9, 780
Tru9I TTAA 2 cut(s) 9, 780
TscAI CASTG 2 cut(s) 67, 910
TseFI GTSAC 1 cut(s) 860
TseI GCWGC 2 cut(s) 234, 306
Tsp45I GTSAC 1 cut(s) 860
TspDTI ATGAA 2 cut(s) 830, 975
TspMI CCCGGG 1 cut(s) 463
TspRI CASTG 2 cut(s) 67, 910
VpaK11BI GGWCC 4 cut(s) 105, 604, 648, 1014
XmaI CCCGGG 1 cut(s) 463
XspI CTAG 2 cut(s) 701, 891
Zsp2I ATGCAT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.