Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0012147

Physical Location & Seq

Genomic Coordinates Forward (+)

59744710 .. 59746142

Gene Structure 1433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG379400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCTCCTCGCCCTCAGCTCCGCCGCGTTTACCGCGCCACCACCGTCGGATGAGAAGGTCCGGAATCCGACAGCTGGGAAGACGGGGAGGAAGAGATCGAGGACCAAGTTCAGCCAGGAGCAGAAGGACAAGATGTTCTGTTTTGCTGACAAACTAGGCTGGAAACTGCAGAGGAGCGAAGAGAAGTTCGTCGAGGATTTCTGCGACGGGATTGGGATTGGTCGGAACGTTTTTAAGGTTTGGATGCATAACAACAAGCATCACATGATGAAGAAGCAGAGGTTGTTGTCGTCGGCCGGGTTGATCAATGACGGTGACGACGGCGGTGATGCCGGCGGAGGAGCGAGCTTTGATTCCACTGCTGAGGAGAACAACAACAACAACAACAACAACAACAACAATGTGAATGTCATTATCGACTCCCACAATGAAAGTAGCAGAGATCACCACCACGACCACCAAAGGTTTTATCTTTCCAACAATGGGTCCTCTTCTTCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

167

Amino Acids

18.6

Weight (kDa)

7.85

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69600 AT5G60480
fragaria_vesca	FvH4_4g31350
malus_domestica	MD13G1072300.v1.1 MD16G1072800.v1.1
prunus_persica	Prupe.1G274700_v2.0.a1
pyrus_communis	pycom13g06480 pycom16g06310
rosa_chinensis	RchiOBHm_Chr4g0439861
rosa_laevigata	RLG00000006232
rosa_multiflora	Rmu_co8191176.1_g000001 Rmu_sc0006473.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380760
rosa_rugosa	Rorug04G0321800
rosa_samantha	Rh4AG372800 Rh4BG385200 Rh4CG399700 Rh4DG379400
rosa_wichuraiana	Rw4G031870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	26, 35
AccIII	TCCGGA	1 cut(s)	60
AciI	CCGC	5 cut(s)	21, 24, 33, 324, 336
AclI	AACGTT	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	74, 483
AjnI	CCWGG	1 cut(s)	114
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	3 cut(s)	18, 74, 348
AluI	AGCT	3 cut(s)	18, 74, 348
Aor13HI	TCCGGA	1 cut(s)	60
AoxI	GGCC	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	3 cut(s)	58, 102, 486
AsuC2I	CCSGG	1 cut(s)	298
AsuHPI	GGTGA	3 cut(s)	326, 338, 437
AvaII	GGWCC	3 cut(s)	58, 102, 486
BbsI	GAAGAC	1 cut(s)	86
BbvCI	CCTCAGC	2 cut(s)	14, 363
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	116
BclI	TGATCA	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	298
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	2 cut(s)	116, 298
Bme18I	GGWCC	3 cut(s)	58, 102, 486
BmgT120I	GGNCC	3 cut(s)	58, 102, 486
BmiI	GGNNCC	1 cut(s)	487
BmrFI	CCNGG	2 cut(s)	116, 298
BmsI	GCATC	3 cut(s)	234, 268, 319
BpiI	GAAGAC	1 cut(s)	86
Bpu10I	CCTNAGC	2 cut(s)	14, 363
BpuMI	CCSGG	1 cut(s)	298
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 483
Bse118I	RCCGGY	1 cut(s)	332
BseAI	TCCGGA	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	55, 249
BseLI	CCNNNNNNNGG	2 cut(s)	74, 483
BseMII	CTCAG	2 cut(s)	28, 354
BseRI	GAGGAG	3 cut(s)	187, 354, 380
BseX3I	CGGCCG	1 cut(s)	294
BseYI	CCCAGC	1 cut(s)	74
Bsh1236I	CGCG	2 cut(s)	26, 35
Bsh1285I	CGRYCG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	296
BsiEI	CGRYCG	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	61, 297, 333
BslI	CCNNNNNNNGG	2 cut(s)	74, 483
BsnI	GGCC	1 cut(s)	296
Bsp13I	TCCGGA	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	95, 303, 442
BspACI	CCGC	5 cut(s)	21, 24, 33, 324, 336
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	2 cut(s)	27, 355
BspEI	TCCGGA	1 cut(s)	60
BspFNI	CGCG	2 cut(s)	26, 35
BspLI	GGNNCC	1 cut(s)	487
BspMAI	CTGCAG	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	332
BssMI	GATC	3 cut(s)	95, 303, 442
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	45, 314
Bst6I	CTCTTC	3 cut(s)	86, 174, 496
BstC8I	GCNNGC	2 cut(s)	334, 346
BstDEI	CTNAG	2 cut(s)	14, 363
BstF5I	GGATG	2 cut(s)	55, 249
BstFNI	CGCG	2 cut(s)	26, 35
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	3 cut(s)	98, 306, 445
BstMBI	GATC	3 cut(s)	95, 303, 442
BstMCI	CGRYCG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	114, 296
BstSFI	CTRYAG	1 cut(s)	167
BstUI	CGCG	2 cut(s)	26, 35
BstV2I	GAAGAC	1 cut(s)	86
BstZI	CGGCCG	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	296
BtsCI	GGATG	2 cut(s)	55, 249
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	2 cut(s)	334, 346
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	58, 102, 486
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	6 cut(s)	18, 74, 114, 159, 296, 348
CviKI_1	RGCY	6 cut(s)	18, 74, 114, 159, 296, 348
DdeI	CTNAG	2 cut(s)	14, 363
DpnI	GATC	3 cut(s)	97, 305, 444
DpnII	GATC	3 cut(s)	95, 303, 442
EaeI	YGGCCR	1 cut(s)	294
EagI	CGGCCG	1 cut(s)	294
Eam1104I	CTCTTC	3 cut(s)	86, 174, 496
EarI	CTCTTC	3 cut(s)	86, 174, 496
EciI	GGCGGA	2 cut(s)	10, 351
EclXI	CGGCCG	1 cut(s)	294
Eco47I	GGWCC	3 cut(s)	58, 102, 486
Eco52I	CGGCCG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	249
FaeI	CATG	1 cut(s)	268
FaiI	YATR	2 cut(s)	249, 266
FatI	CATG	1 cut(s)	264
FbaI	TGATCA	1 cut(s)	303
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	2 cut(s)	62, 256
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	24
GsaI	CCCAGC	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	3 cut(s)	61, 297, 333
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	3 cut(s)	64, 353, 419
HpaII	CCGG	3 cut(s)	61, 297, 333
HphI	GGTGA	3 cut(s)	326, 338, 437
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	3 cut(s)	49, 69, 225
Hpy188III	TCNNGA	2 cut(s)	61, 501
Hpy8I	GTNNAC	1 cut(s)	30
Hpy99I	CGWCG	5 cut(s)	49, 194, 209, 295, 323
HpyAV	CCTTC	2 cut(s)	49, 118
HpyCH4III	ACNGT	2 cut(s)	45, 314
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	169, 247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	14, 363
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	1 cut(s)	35
Kpn2I	TCCGGA	1 cut(s)	60
KroI	GCCGGC	1 cut(s)	332
KroNI	GCCGGC	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	303
Kzo9I	GATC	3 cut(s)	95, 303, 442
LmnI	GCTCC	5 cut(s)	9, 23, 118, 174, 341
LpnPI	CCDG	7 cut(s)	60, 74, 101, 128, 145, 310, 346
LweI	GCATC	3 cut(s)	234, 268, 319
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	3 cut(s)	97, 305, 444
MboI	GATC	3 cut(s)	95, 303, 442
MboII	GAAGA	6 cut(s)	91, 103, 191, 283, 483, 486
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	4 cut(s)	27, 92, 203, 501
Mph1103I	ATGCAT	1 cut(s)	249
MroI	TCCGGA	1 cut(s)	60
MroNI	GCCGGC	1 cut(s)	332
MseI	TTAA	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	3 cut(s)	61, 297, 333
MspR9I	CCNGG	2 cut(s)	116, 298
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	2 cut(s)	26, 35
MwoI	GCNNNNNNNGC	1 cut(s)	32
NaeI	GCCGGC	1 cut(s)	334
NciI	CCSGG	1 cut(s)	298
NdeII	GATC	3 cut(s)	95, 303, 442
NgoMIV	GCCGGC	1 cut(s)	332
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	1 cut(s)	487
NmuCI	GTSAC	1 cut(s)	314
NsiI	ATGCAT	1 cut(s)	249
PdiI	GCCGGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	64, 353
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PpuMI	RGGWCCY	1 cut(s)	486
Psp1406I	AACGTT	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	487
PspPI	GGNCC	3 cut(s)	58, 102, 486
PspPPI	RGGWCCY	1 cut(s)	486
PstI	CTGCAG	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	3 cut(s)	95, 303, 442
Sau96I	GGNCC	3 cut(s)	58, 102, 486
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	116, 298
SetI	ASST	8 cut(s)	20, 60, 76, 231, 240, 284, 350, 467
SfaNI	GCATC	3 cut(s)	234, 268, 319
SfcI	CTRYAG	1 cut(s)	167
SinI	GGWCC	3 cut(s)	58, 102, 486
SsiI	CCGC	5 cut(s)	21, 24, 33, 324, 336
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	114, 296
TaaI	ACNGT	2 cut(s)	45, 314
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	98, 192, 417
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	64, 353
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	284, 444
TspRI	CASTG	1 cut(s)	364
VpaK11BI	GGWCC	3 cut(s)	58, 102, 486
XspI	CTAG	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.