RchiOBHm_Chr4g0439861

Zinc-finger homeodomain protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
62189936 .. 62192231
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40789

Sequence Viewer

Length: 1134 bp
ATGACCAAGACAAAAAGGTCCCCATTCTTTGTAGAGAACTTTGAGCTTAACAAAACCCTAATATTTGATTCCCGATTCCCGACCCAATTCATGGACTGCAAGCCCATTTCTACCACAGCCACCGCCACCATCAATACTCCAGATACAGACACTGAGCTCATCCCCACATCAGACCCCAAATCTGGCGCCTTTAGGTCCTTATCCTTCAACAACGGCCCACTCAAGCCCCGCCACCCACTTCCTCCGCCGCCTCATACGGCGGTTGTGTACCGAGAATGTTTGAAGAACCACGCGGCCAGCCTCGGCGGCCACGCCCTCGACGGCTGCGGTGAGTTTTTCCCCAGCCCCATTTCCAACCCCGCCAACCCCACCTCGCTAAAATGCGCCGCCTGCGGCTGCCACCGTAACTTCCACCGCCGCGACGCGCCTGACGAACCACGCGCGTTCACTCCTCCAAAGGCCTTTCTCGTCAGCCCTACTCCTCACCACCGCCTTCTTCCTCCGCCGCCAGCTCAGCACAGCTCAAGCCCAAGCCCAAGCAGGAGCACGAGCCCGGGCCCAAGCACCACGTTGAGCCCGCACTCTCCGCCGCCGGTCTCGCACGTGCCGCCCTCCTTCTTCGGCACACCGTCCCAGATGCTCCTCGCCCTCAGCTCCGCCGCGTTTACCGCGCCACCACCGTCGGATGAGAAGGTCCGGAATCCGACAGCTGGGAAGACGGGGAGGAAGAGATCGAGGACCAAGTTCAGCCAGGAGCAGAAGGACAAGATGTTCTGTTTTGCTGACAAACTAGGCTGGAAACTGCAGAGGAGCGAAGAGAAGTTCGTCGAGGATTTCTGCGACGGGATTGGGATTGGTCGGAACGTTTTTAAGGTTTGGATGCATAACAACAAGCATCACATGATGAAGAAGCAGAGGTTGTTGTCGTCGGCCGGGTTGATCAATGACGGTGACGACGGCGGTGATGCCGGCGGAGGAGCGAGCTTTGATTCCACTGCTGAGGAGAACAACAACAACAACAACAACAACAATGTGAATGTCATTATCGACTCCCACAATGAAAGTAGCAGAGATCACCACCACGACCACCAAAGGTTTTATCTTTCCAACAATGGGTCCTCTTCTTCGTCTTGA

Protein Analysis

377

Amino Acids

41.25

Weight (kDa)

8.98

Isoelectric Point (pI)

63.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 88 - 141 5.3e-27 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012147)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 185
AccB7I CCANNNNNTGG 1 cut(s) 91
AccII CGCG 7 cut(s) 293, 420, 425, 441, 443, 662, 671
AccIII TCCGGA 1 cut(s) 696
AclI AACGTT 1 cut(s) 864
AcoI YGGCCR 3 cut(s) 294, 307, 930
AcvI CACGTG 1 cut(s) 604
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 4 cut(s) 91, 182, 710, 1113
AgsI TTSAA 2 cut(s) 208, 283
AjnI CCWGG 1 cut(s) 750
AloI GAACNNNNNNTCC 2 cut(s) 755, 787
AluBI AGCT 7 cut(s) 46, 157, 512, 522, 654, 710, 984
AluI AGCT 7 cut(s) 46, 157, 512, 522, 654, 710, 984
Alw21I GWGCWC 2 cut(s) 159, 548
Alw26I GTCTC 1 cut(s) 601
AlwNI CAGNNNCTG 1 cut(s) 152
Ama87I CYCGRG 1 cut(s) 553
Aor13HI TCCGGA 1 cut(s) 696
AoxI GGCC 6 cut(s) 214, 294, 307, 459, 556, 930
ApaI GGGCCC 1 cut(s) 560
ApeKI GCWGC 2 cut(s) 324, 396
AspLEI GCGC 5 cut(s) 188, 386, 427, 443, 673
AspS9I GGNCC 8 cut(s) 18, 195, 215, 556, 557, 694, 738, 1116
AsuC2I CCSGG 3 cut(s) 554, 555, 934
AsuHPI GGTGA 5 cut(s) 341, 476, 962, 974, 1067
AvaI CYCGRG 1 cut(s) 553
AvaII GGWCC 5 cut(s) 18, 195, 694, 738, 1116
BaeGI GKGCMC 1 cut(s) 560
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 4 cut(s) 159, 554, 560, 578
BauI CACGAG 1 cut(s) 547
BbrPI CACGTG 1 cut(s) 604
BbsI GAAGAC 1 cut(s) 722
Bbv12I GWGCWC 2 cut(s) 159, 548
BbvCI CCTCAGC 2 cut(s) 650, 999
BbvI GCAGC 2 cut(s) 311, 383
BccI CCATC 1 cut(s) 137
BceAI ACGGC 4 cut(s) 229, 273, 337, 973
BciT130I CCWGG 1 cut(s) 752
BclI TGATCA 1 cut(s) 939
BcnI CCSGG 3 cut(s) 554, 555, 934
BcoDI GTCTC 1 cut(s) 601
BfaI CTAG 1 cut(s) 791
BfmI CTRYAG 1 cut(s) 803
BfoI RGCGCY 1 cut(s) 189
BglI GCCNNNNNGGC 1 cut(s) 306
BlpI GCTNAGC 1 cut(s) 513
Bme1390I CCNGG 4 cut(s) 554, 555, 752, 934
Bme18I GGWCC 5 cut(s) 18, 195, 694, 738, 1116
BmeT110I CYCGRG 1 cut(s) 553
BmgT120I GGNCC 8 cut(s) 18, 195, 215, 556, 557, 694, 738, 1116
BmiI GGNNCC 4 cut(s) 20, 187, 558, 1117
BmrFI CCNGG 4 cut(s) 554, 555, 752, 934
BmsI GCATC 4 cut(s) 627, 870, 904, 955
BpiI GAAGAC 1 cut(s) 722
BpmI CTGGAG 1 cut(s) 123
Bpu10I CCTNAGC 2 cut(s) 650, 999
Bpu1102I GCTNAGC 1 cut(s) 513
BpuEI CTTGAG 2 cut(s) 206, 508
BpuMI CCSGG 3 cut(s) 554, 555, 934
BsaAI YACGTR 1 cut(s) 604
BsaHI GRCGYC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 601
BsaJI CCNNGG 2 cut(s) 301, 553
BsaWI WCCGGW 1 cut(s) 696
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 182, 710, 1113
Bse118I RCCGGY 2 cut(s) 592, 968
BseAI TCCGGA 1 cut(s) 696
BseBI CCWGG 1 cut(s) 752
BseDI CCNNGG 2 cut(s) 301, 553
BseGI GGATG 3 cut(s) 159, 691, 885
BseLI CCNNNNNNNGG 4 cut(s) 91, 182, 710, 1113
BseMII CTCAG 4 cut(s) 144, 527, 664, 990
BseRI GAGGAG 6 cut(s) 441, 471, 632, 823, 990, 1016
BseSI GKGCMC 1 cut(s) 560
BseX3I CGGCCG 1 cut(s) 930
BseXI GCAGC 2 cut(s) 311, 383
BseYI CCCAGC 2 cut(s) 341, 710
Bsh1236I CGCG 7 cut(s) 293, 420, 425, 441, 443, 662, 671
Bsh1285I CGRYCG 1 cut(s) 933
BshFI GGCC 6 cut(s) 216, 296, 309, 461, 558, 932
BshNI GGYRCC 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 933
BsiHKAI GWGCWC 2 cut(s) 159, 548
BsiHKCI CYCGRG 1 cut(s) 553
BsiSI CCGG 5 cut(s) 554, 593, 697, 933, 969
BslFI GGGAC 2 cut(s) 4, 616
BslI CCNNNNNNNGG 4 cut(s) 91, 182, 710, 1113
BsmAI GTCTC 1 cut(s) 601
BsmFI GGGAC 2 cut(s) 4, 616
BsnI GGCC 6 cut(s) 216, 296, 309, 461, 558, 932
Bso31I GGTCTC 1 cut(s) 601
BsoBI CYCGRG 1 cut(s) 553
Bsp120I GGGCCC 1 cut(s) 556
Bsp1286I GDGCHC 5 cut(s) 159, 548, 554, 560, 578
Bsp13I TCCGGA 1 cut(s) 696
Bsp143I GATC 3 cut(s) 731, 939, 1072
Bsp1720I GCTNAGC 1 cut(s) 513
BspANI GGCC 6 cut(s) 216, 296, 309, 461, 558, 932
BspCNI CTCAG 4 cut(s) 145, 526, 663, 991
BspEI TCCGGA 1 cut(s) 696
BspFNI CGCG 7 cut(s) 293, 420, 425, 441, 443, 662, 671
BspLI GGNNCC 4 cut(s) 20, 187, 558, 1117
BspMAI CTGCAG 1 cut(s) 807
BspT107I GGYRCC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 601
BsrFI RCCGGY 2 cut(s) 592, 968
BssAI RCCGGY 2 cut(s) 592, 968
BssECI CCNNGG 2 cut(s) 301, 553
BssMI GATC 3 cut(s) 731, 939, 1072
BssNI GRCGYC 1 cut(s) 186
BssSI CACGAG 1 cut(s) 547
Bst2BI CACGAG 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 752
Bst4CI ACNGT 4 cut(s) 404, 630, 681, 950
Bst6I CTCTTC 3 cut(s) 722, 810, 1126
BstACI GRCGYC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 604
BstC8I GCNNGC 7 cut(s) 101, 298, 391, 510, 578, 970, 982
BstDEI CTNAG 4 cut(s) 153, 513, 650, 999
BstF5I GGATG 3 cut(s) 159, 691, 885
BstFNI CGCG 7 cut(s) 293, 420, 425, 441, 443, 662, 671
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 5 cut(s) 188, 386, 427, 443, 673
BstKTI GATC 3 cut(s) 734, 942, 1075
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 3 cut(s) 731, 939, 1072
BstMCI CGRYCG 1 cut(s) 933
BstMWI GCNNNNNNNGC 7 cut(s) 306, 390, 514, 586, 598, 607, 668
BstNI CCWGG 1 cut(s) 752
BstSCI CCNGG 4 cut(s) 552, 553, 750, 932
BstSFI CTRYAG 1 cut(s) 803
BstSLI GKGCMC 1 cut(s) 560
BstUI CGCG 7 cut(s) 293, 420, 425, 441, 443, 662, 671
BstV1I GCAGC 2 cut(s) 311, 383
BstV2I GAAGAC 1 cut(s) 722
BstZI CGGCCG 1 cut(s) 930
BsuRI GGCC 6 cut(s) 216, 296, 309, 461, 558, 932
BtsCI GGATG 3 cut(s) 159, 691, 885
BtsI GCAGTG 1 cut(s) 993
BtsIMutI CAGTG 2 cut(s) 150, 993
Cac8I GCNNGC 7 cut(s) 101, 298, 391, 510, 578, 970, 982
CaiI CAGNNNCTG 1 cut(s) 152
CfoI GCGC 5 cut(s) 188, 386, 427, 443, 673
Cfr10I RCCGGY 2 cut(s) 592, 968
Cfr13I GGNCC 8 cut(s) 18, 195, 215, 556, 557, 694, 738, 1116
Cfr9I CCCGGG 1 cut(s) 553
CseI GACGC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 91, 901
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 4 cut(s) 153, 513, 650, 999
DinI GGCGCC 1 cut(s) 187
DpnI GATC 3 cut(s) 733, 941, 1074
DpnII GATC 3 cut(s) 731, 939, 1072
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 3 cut(s) 294, 307, 930
EagI CGGCCG 1 cut(s) 930
Eam1104I CTCTTC 3 cut(s) 722, 810, 1126
EarI CTCTTC 3 cut(s) 722, 810, 1126
EciI GGCGGA 5 cut(s) 234, 492, 576, 646, 987
Ecl136II GAGCTC 1 cut(s) 157
EclXI CGGCCG 1 cut(s) 930
Eco147I AGGCCT 1 cut(s) 461
Eco24I GRGCYC 4 cut(s) 159, 554, 560, 578
Eco31I GGTCTC 1 cut(s) 601
Eco47I GGWCC 5 cut(s) 18, 195, 694, 738, 1116
Eco52I CGGCCG 1 cut(s) 930
Eco53kI GAGCTC 1 cut(s) 157
Eco72I CACGTG 1 cut(s) 604
Eco88I CYCGRG 1 cut(s) 553
EcoICRI GAGCTC 1 cut(s) 157
EcoO109I RGGNCCY 3 cut(s) 18, 195, 1116
EcoRII CCWGG 1 cut(s) 750
EcoT22I ATGCAT 1 cut(s) 885
EcoT38I GRGCYC 4 cut(s) 159, 554, 560, 578
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
FaeI CATG 2 cut(s) 94, 904
FaiI YATR 4 cut(s) 92, 255, 885, 902
FaqI GGGAC 2 cut(s) 4, 616
FatI CATG 2 cut(s) 90, 900
FauI CCCGC 3 cut(s) 236, 367, 585
FbaI TGATCA 1 cut(s) 939
FokI GGATG 3 cut(s) 146, 698, 892
FriOI GRGCYC 4 cut(s) 159, 554, 560, 578
FspBI CTAG 1 cut(s) 791
GlaI GCGC 5 cut(s) 187, 385, 426, 442, 672
GsaI CCCAGC 2 cut(s) 345, 714
GsuI CTGGAG 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 6 cut(s) 216, 296, 309, 461, 558, 932
HapII CCGG 5 cut(s) 554, 593, 697, 933, 969
HgaI GACGC 1 cut(s) 431
HhaI GCGC 5 cut(s) 188, 386, 427, 443, 673
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 2 cut(s) 94, 904
Hin6I GCGC 5 cut(s) 186, 384, 425, 441, 671
HinP1I GCGC 5 cut(s) 186, 384, 425, 441, 671
HinfI GANTC 5 cut(s) 68, 75, 700, 989, 1049
HpaII CCGG 5 cut(s) 554, 593, 697, 933, 969
HphI GGTGA 5 cut(s) 341, 476, 962, 974, 1067
Hpy166II GTNNAC 3 cut(s) 268, 447, 666
Hpy188I TCNGA 4 cut(s) 172, 685, 705, 861
Hpy188III TCNNGA 5 cut(s) 72, 79, 140, 697, 1131
Hpy8I GTNNAC 3 cut(s) 268, 447, 666
Hpy99I CGWCG 7 cut(s) 323, 425, 685, 830, 845, 931, 959
HpyAV CCTTC 5 cut(s) 214, 503, 625, 685, 754
HpyCH4III ACNGT 4 cut(s) 404, 630, 681, 950
HpyCH4IV ACGT 3 cut(s) 569, 603, 864
HpyCH4V TGCA 3 cut(s) 99, 805, 883
HpyF10VI GCNNNNNNNGC 7 cut(s) 306, 390, 514, 586, 598, 607, 668
HpyF3I CTNAG 4 cut(s) 153, 513, 650, 999
HpySE526I ACGT 3 cut(s) 569, 603, 864
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 2 cut(s) 94, 904
HspAI GCGC 5 cut(s) 186, 384, 425, 441, 671
KasI GGCGCC 1 cut(s) 185
Kpn2I TCCGGA 1 cut(s) 696
KroI GCCGGC 1 cut(s) 968
KroNI GCCGGC 1 cut(s) 970
Ksp22I TGATCA 1 cut(s) 939
Kzo9I GATC 3 cut(s) 731, 939, 1072
LmnI GCTCC 6 cut(s) 543, 645, 659, 754, 810, 977
Lsp1109I GCAGC 2 cut(s) 311, 383
LweI GCATC 4 cut(s) 627, 870, 904, 955
MaeI CTAG 1 cut(s) 791
MaeII ACGT 3 cut(s) 569, 603, 864
MaeIII GTNAC 2 cut(s) 404, 950
MalI GATC 3 cut(s) 733, 941, 1074
MboI GATC 3 cut(s) 731, 939, 1072
MboII GAAGA 9 cut(s) 295, 488, 610, 727, 739, 827, 919, 1113, 1116
MhlI GDGCHC 5 cut(s) 159, 548, 554, 560, 578
MluCI AATT 1 cut(s) 86
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 1 cut(s) 1043
MmeI TCCRAC 5 cut(s) 378, 663, 728, 839, 1131
Mph1103I ATGCAT 1 cut(s) 885
MroI TCCGGA 1 cut(s) 696
MroNI GCCGGC 1 cut(s) 968
MseI TTAA 2 cut(s) 48, 870
MspA1I CMGCKG 1 cut(s) 710
MspI CCGG 5 cut(s) 554, 593, 697, 933, 969
MspR9I CCNGG 4 cut(s) 554, 555, 752, 934
MvaI CCWGG 1 cut(s) 752
MvnI CGCG 7 cut(s) 293, 420, 425, 441, 443, 662, 671
MwoI GCNNNNNNNGC 7 cut(s) 306, 390, 514, 586, 598, 607, 668
NaeI GCCGGC 1 cut(s) 970
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 3 cut(s) 554, 555, 934
NdeII GATC 3 cut(s) 731, 939, 1072
NgoMIV GCCGGC 1 cut(s) 968
NlaIII CATG 2 cut(s) 94, 904
NlaIV GGNNCC 4 cut(s) 20, 187, 558, 1117
NmeAIII GCCGAG 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 950
NsiI ATGCAT 1 cut(s) 885
PceI AGGCCT 1 cut(s) 461
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PdiI GCCGGC 1 cut(s) 970
PfeI GAWTC 4 cut(s) 68, 75, 700, 989
PflMI CCANNNNNTGG 1 cut(s) 91
PleI GAGTC 1 cut(s) 1043
PluTI GGCGCC 1 cut(s) 189
PmaCI CACGTG 1 cut(s) 604
PmlI CACGTG 1 cut(s) 604
PpsI GAGTC 1 cut(s) 1043
Ppu21I YACGTR 1 cut(s) 604
PpuMI RGGWCCY 3 cut(s) 18, 195, 1116
Psp124BI GAGCTC 1 cut(s) 159
Psp1406I AACGTT 1 cut(s) 864
Psp5II RGGWCCY 3 cut(s) 18, 195, 1116
Psp6I CCWGG 1 cut(s) 750
PspCI CACGTG 1 cut(s) 604
PspFI CCCAGC 2 cut(s) 341, 710
PspGI CCWGG 1 cut(s) 750
PspN4I GGNNCC 4 cut(s) 20, 187, 558, 1117
PspOMI GGGCCC 1 cut(s) 556
PspPI GGNCC 8 cut(s) 18, 195, 215, 556, 557, 694, 738, 1116
PspPPI RGGWCCY 3 cut(s) 18, 195, 1116
PstI CTGCAG 1 cut(s) 807
PstNI CAGNNNCTG 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 2 cut(s) 48, 870
Sau3AI GATC 3 cut(s) 731, 939, 1072
Sau96I GGNCC 8 cut(s) 18, 195, 215, 556, 557, 694, 738, 1116
SchI GAGTC 1 cut(s) 1043
ScrFI CCNGG 4 cut(s) 554, 555, 752, 934
SduI GDGCHC 5 cut(s) 159, 548, 554, 560, 578
SfaNI GCATC 4 cut(s) 627, 870, 904, 955
SfcI CTRYAG 1 cut(s) 803
SfoI GGCGCC 1 cut(s) 187
SinI GGWCC 5 cut(s) 18, 195, 694, 738, 1116
SmaI CCCGGG 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 221, 523
SmoI CTYRAG 2 cut(s) 221, 523
SrfI GCCCGGGC 1 cut(s) 555
Sse9I AATT 1 cut(s) 86
SseBI AGGCCT 1 cut(s) 461
SspDI GGCGCC 1 cut(s) 185
SspI AATATT 1 cut(s) 63
SspMI CTAG 1 cut(s) 791
SstI GAGCTC 1 cut(s) 159
StuI AGGCCT 1 cut(s) 461
StyD4I CCNGG 4 cut(s) 552, 553, 750, 932
TaaI ACNGT 4 cut(s) 404, 630, 681, 950
TaiI ACGT 3 cut(s) 572, 606, 867
TaqI TCGA 4 cut(s) 318, 734, 828, 1047
TasI AATT 1 cut(s) 86
TfiI GAWTC 4 cut(s) 68, 75, 700, 989
Tru1I TTAA 2 cut(s) 48, 870
Tru9I TTAA 2 cut(s) 48, 870
TscAI CASTG 2 cut(s) 157, 1000
TseFI GTSAC 1 cut(s) 950
TseI GCWGC 2 cut(s) 324, 396
Tsp45I GTSAC 1 cut(s) 950
TspDTI ATGAA 3 cut(s) 79, 920, 1074
TspMI CCCGGG 1 cut(s) 553
TspRI CASTG 2 cut(s) 157, 1000
Van91I CCANNNNNTGG 1 cut(s) 91
VpaK11BI GGWCC 5 cut(s) 18, 195, 694, 738, 1116
XmaI CCCGGG 1 cut(s) 553
XspI CTAG 1 cut(s) 791
Zsp2I ATGCAT 1 cut(s) 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.