Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8191176.1

Orthogroup ID

OG0012147

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 621

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8191176.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ccgccgccagctcagcacagctcaagcccaagcccaagccggagcacgagcccgggcccaagcaccacgttgagcccgcactctccgccgccggtctcgcacgtgccgccctccttcttcggcacaccgtcccagatgctcctcgccctcagctccgccgcgtttatcgcgccaccaccgtcggatgagaaggtccggaatccgacggctgggaagacggggaggaagagatcgaggaccaagttcagccaggagcagaaggacaagatgttctgttttgctgacaaactaggctggaaactgcagaggagcgaagagaagttcgtcgaggatttctgcgacgggattgggattggtcggaacgtttttaaggtttggatgcataacaacaagcatcacatgatgaagaagcagaggttgttgtcgtcggccgggttgatcaatgacggtgacgacggcggtgacgccggcggaggagctagctttgattccactgctgaggagaacaacaacaacaacaatgtgaatgtcattatcgactcccacaatgaaagtagcagagataatcatcaccaccaaaggttttatctttccaacaatgggtcctcttcttcgtcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

206

Amino Acids

22.41

Weight (kDa)

8.98

Isoelectric Point (pI)

78.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69600 AT5G60480
fragaria_vesca	FvH4_4g31350
malus_domestica	MD13G1072300.v1.1 MD16G1072800.v1.1
prunus_persica	Prupe.1G274700_v2.0.a1
pyrus_communis	pycom13g06480 pycom16g06310
rosa_chinensis	RchiOBHm_Chr4g0439861
rosa_laevigata	RLG00000006232
rosa_multiflora	Rmu_co8191176.1_g000001 Rmu_sc0006473.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380760
rosa_rugosa	Rorug04G0321800
rosa_samantha	Rh4AG372800 Rh4BG385200 Rh4CG399700 Rh4DG379400
rosa_wichuraiana	Rw4G031870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	161, 170
AccIII	TCCGGA	1 cut(s)	195
AclI	AACGTT	1 cut(s)	363
AcoI	YGGCCR	1 cut(s)	429
AcvI	CACGTG	1 cut(s)	103
AcyI	GRCGYC	1 cut(s)	465
AfiI	CCNNNNNNNGG	2 cut(s)	209, 600
AjnI	CCWGG	1 cut(s)	249
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	5 cut(s)	11, 21, 153, 479, 483
AluI	AGCT	5 cut(s)	11, 21, 153, 479, 483
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	52
Aor13HI	TCCGGA	1 cut(s)	195
AoxI	GGCC	2 cut(s)	55, 429
ApaI	GGGCCC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	5 cut(s)	55, 56, 193, 237, 603
AsuC2I	CCSGG	3 cut(s)	53, 54, 433
AsuHPI	GGTGA	3 cut(s)	461, 473, 563
AsuNHI	GCTAGC	1 cut(s)	479
AvaI	CYCGRG	1 cut(s)	52
AvaII	GGWCC	3 cut(s)	193, 237, 603
BaeGI	GKGCMC	1 cut(s)	59
BanII	GRGCYC	3 cut(s)	53, 59, 77
BauI	CACGAG	1 cut(s)	46
BbrPI	CACGTG	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	47
BbvCI	CCTCAGC	2 cut(s)	149, 498
BceAI	ACGGC	2 cut(s)	222, 472
BciT130I	CCWGG	1 cut(s)	251
BclI	TGATCA	1 cut(s)	438
BcnI	CCSGG	3 cut(s)	53, 54, 433
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	2 cut(s)	290, 480
BfmI	CTRYAG	1 cut(s)	302
BisI	GCNGC	4 cut(s)	5, 89, 107, 159
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	4 cut(s)	6, 90, 108, 160
Bme1390I	CCNGG	4 cut(s)	53, 54, 251, 433
Bme18I	GGWCC	3 cut(s)	193, 237, 603
BmeT110I	CYCGRG	1 cut(s)	52
BmgT120I	GGNCC	5 cut(s)	55, 56, 193, 237, 603
BmiI	GGNNCC	2 cut(s)	57, 604
BmrFI	CCNGG	4 cut(s)	53, 54, 251, 433
BmsI	GCATC	3 cut(s)	126, 369, 403
BmtI	GCTAGC	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	221
Bpu10I	CCTNAGC	2 cut(s)	149, 498
Bpu1102I	GCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	7
BpuMI	CCSGG	3 cut(s)	53, 54, 433
BsaAI	YACGTR	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 600
Bse118I	RCCGGY	2 cut(s)	91, 467
Bse8I	GATNNNNATC	1 cut(s)	567
BseAI	TCCGGA	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	190, 384
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	2 cut(s)	209, 600
BseMII	CTCAG	3 cut(s)	26, 163, 489
BseRI	GAGGAG	4 cut(s)	131, 322, 489, 515
BseSI	GKGCMC	1 cut(s)	59
BseX3I	CGGCCG	1 cut(s)	429
BseYI	CCCAGC	1 cut(s)	209
Bsh1236I	CGCG	2 cut(s)	161, 170
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	57, 431
BsiEI	CGRYCG	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	47
BsiHKCI	CYCGRG	1 cut(s)	52
BsiSI	CCGG	6 cut(s)	40, 53, 92, 196, 432, 468
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	209, 600
BsmAI	GTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	57, 431
Bso31I	GGTCTC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	52
Bsp120I	GGGCCC	1 cut(s)	55
Bsp1286I	GDGCHC	4 cut(s)	47, 53, 59, 77
Bsp13I	TCCGGA	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	230, 438
Bsp1720I	GCTNAGC	1 cut(s)	12
BspANI	GGCC	2 cut(s)	57, 431
BspCNI	CTCAG	3 cut(s)	25, 162, 490
BspEI	TCCGGA	1 cut(s)	195
BspFNI	CGCG	2 cut(s)	161, 170
BspLI	GGNNCC	2 cut(s)	57, 604
BspMAI	CTGCAG	1 cut(s)	306
BspOI	GCTAGC	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	100
BsrFI	RCCGGY	2 cut(s)	91, 467
BssAI	RCCGGY	2 cut(s)	91, 467
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	2 cut(s)	230, 438
BssNI	GRCGYC	1 cut(s)	465
BssSI	CACGAG	1 cut(s)	46
Bst2BI	CACGAG	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	3 cut(s)	129, 180, 449
Bst6I	CTCTTC	3 cut(s)	221, 309, 613
BstACI	GRCGYC	1 cut(s)	465
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	4 cut(s)	9, 77, 469, 481
BstDEI	CTNAG	3 cut(s)	12, 149, 498
BstF5I	GGATG	2 cut(s)	190, 384
BstFNI	CGCG	2 cut(s)	161, 170
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	2 cut(s)	233, 441
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	2 cut(s)	230, 438
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 85, 97, 106, 167
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	4 cut(s)	51, 52, 249, 431
BstSFI	CTRYAG	1 cut(s)	302
BstSLI	GKGCMC	1 cut(s)	59
BstUI	CGCG	2 cut(s)	161, 170
BstV2I	GAAGAC	1 cut(s)	221
BstZI	CGGCCG	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	57, 431
BtsCI	GGATG	2 cut(s)	190, 384
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	4 cut(s)	9, 77, 469, 481
CfoI	GCGC	1 cut(s)	172
Cfr10I	RCCGGY	2 cut(s)	91, 467
Cfr13I	GGNCC	5 cut(s)	55, 56, 193, 237, 603
Cfr9I	CCCGGG	1 cut(s)	52
CseI	GACGC	1 cut(s)	473
CviAII	CATG	1 cut(s)	400
DdeI	CTNAG	3 cut(s)	12, 149, 498
DpnI	GATC	2 cut(s)	232, 440
DpnII	GATC	2 cut(s)	230, 438
EaeI	YGGCCR	1 cut(s)	429
EagI	CGGCCG	1 cut(s)	429
Eam1104I	CTCTTC	3 cut(s)	221, 309, 613
EarI	CTCTTC	3 cut(s)	221, 309, 613
EciI	GGCGGA	3 cut(s)	75, 145, 486
EclXI	CGGCCG	1 cut(s)	429
Eco24I	GRGCYC	3 cut(s)	53, 59, 77
Eco31I	GGTCTC	1 cut(s)	100
Eco47I	GGWCC	3 cut(s)	193, 237, 603
Eco52I	CGGCCG	1 cut(s)	429
Eco72I	CACGTG	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	603
EcoRII	CCWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	384
EcoT38I	GRGCYC	3 cut(s)	53, 59, 77
FaeI	CATG	1 cut(s)	403
FaiI	YATR	2 cut(s)	384, 401
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	1 cut(s)	399
FauI	CCCGC	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	438
Fnu4HI	GCNGC	4 cut(s)	5, 89, 107, 159
FokI	GGATG	2 cut(s)	197, 391
FriOI	GRGCYC	3 cut(s)	53, 59, 77
Fsp4HI	GCNGC	4 cut(s)	5, 89, 107, 159
FspBI	CTAG	2 cut(s)	290, 480
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	4 cut(s)	5, 89, 107, 159
GsaI	CCCAGC	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	57, 431
HapII	CCGG	6 cut(s)	40, 53, 92, 196, 432, 468
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	465
Hin1II	CATG	1 cut(s)	403
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	3 cut(s)	199, 488, 539
HpaII	CCGG	6 cut(s)	40, 53, 92, 196, 432, 468
HphI	GGTGA	3 cut(s)	461, 473, 563
Hpy188I	TCNGA	3 cut(s)	184, 204, 360
Hpy188III	TCNNGA	2 cut(s)	196, 618
Hpy99I	CGWCG	6 cut(s)	184, 208, 329, 344, 430, 458
HpyAV	CCTTC	3 cut(s)	124, 184, 253
HpyCH4III	ACNGT	3 cut(s)	129, 180, 449
HpyCH4IV	ACGT	3 cut(s)	68, 102, 363
HpyCH4V	TGCA	2 cut(s)	304, 382
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 85, 97, 106, 167
HpyF3I	CTNAG	3 cut(s)	12, 149, 498
HpySE526I	ACGT	3 cut(s)	68, 102, 363
Hsp92I	GRCGYC	1 cut(s)	465
Hsp92II	CATG	1 cut(s)	403
HspAI	GCGC	1 cut(s)	170
Kpn2I	TCCGGA	1 cut(s)	195
KroI	GCCGGC	1 cut(s)	467
KroNI	GCCGGC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	2 cut(s)	230, 438
LmnI	GCTCC	6 cut(s)	42, 144, 158, 253, 309, 476
LweI	GCATC	3 cut(s)	126, 369, 403
MaeI	CTAG	2 cut(s)	290, 480
MaeII	ACGT	3 cut(s)	68, 102, 363
MaeIII	GTNAC	2 cut(s)	449, 461
MalI	GATC	2 cut(s)	232, 440
MboI	GATC	2 cut(s)	230, 438
MboII	GAAGA	7 cut(s)	109, 226, 238, 326, 418, 600, 603
MhlI	GDGCHC	4 cut(s)	47, 53, 59, 77
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	4 cut(s)	162, 227, 338, 618
Mph1103I	ATGCAT	1 cut(s)	384
MreI	CGCCGGCG	1 cut(s)	467
MroI	TCCGGA	1 cut(s)	195
MroNI	GCCGGC	1 cut(s)	467
MseI	TTAA	1 cut(s)	369
MspI	CCGG	6 cut(s)	40, 53, 92, 196, 432, 468
MspR9I	CCNGG	4 cut(s)	53, 54, 251, 433
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	2 cut(s)	161, 170
MwoI	GCNNNNNNNGC	5 cut(s)	13, 85, 97, 106, 167
NaeI	GCCGGC	1 cut(s)	469
NciI	CCSGG	3 cut(s)	53, 54, 433
NdeII	GATC	2 cut(s)	230, 438
NgoMIV	GCCGGC	1 cut(s)	467
NheI	GCTAGC	1 cut(s)	479
NlaIII	CATG	1 cut(s)	403
NlaIV	GGNNCC	2 cut(s)	57, 604
NmuCI	GTSAC	2 cut(s)	449, 461
NsiI	ATGCAT	1 cut(s)	384
PdiI	GCCGGC	1 cut(s)	469
PfeI	GAWTC	2 cut(s)	199, 488
PkrI	GCNGC	4 cut(s)	6, 90, 108, 160
PleI	GAGTC	1 cut(s)	533
PmaCI	CACGTG	1 cut(s)	103
PmlI	CACGTG	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	533
Ppu21I	YACGTR	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	603
Psp1406I	AACGTT	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	249
PspCI	CACGTG	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	57, 604
PspOMI	GGGCCC	1 cut(s)	55
PspPI	GGNCC	5 cut(s)	55, 56, 193, 237, 603
PspPPI	RGGWCCY	1 cut(s)	603
PstI	CTGCAG	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	4 cut(s)	5, 89, 107, 159
Sau3AI	GATC	2 cut(s)	230, 438
Sau96I	GGNCC	5 cut(s)	55, 56, 193, 237, 603
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	4 cut(s)	53, 54, 251, 433
SduI	GDGCHC	4 cut(s)	47, 53, 59, 77
SfaNI	GCATC	3 cut(s)	126, 369, 403
SfcI	CTRYAG	1 cut(s)	302
SgrAI	CRCCGGYG	1 cut(s)	467
SinI	GGWCC	3 cut(s)	193, 237, 603
SmaI	CCCGGG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SrfI	GCCCGGGC	1 cut(s)	54
SspMI	CTAG	2 cut(s)	290, 480
StyD4I	CCNGG	4 cut(s)	51, 52, 249, 431
TaaI	ACNGT	3 cut(s)	129, 180, 449
TaiI	ACGT	3 cut(s)	71, 105, 366
TaqI	TCGA	3 cut(s)	233, 327, 537
TauI	GCSGC	4 cut(s)	7, 91, 109, 161
TfiI	GAWTC	2 cut(s)	199, 488
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	2 cut(s)	449, 461
Tsp45I	GTSAC	2 cut(s)	449, 461
TspDTI	ATGAA	2 cut(s)	419, 564
TspMI	CCCGGG	1 cut(s)	52
TspRI	CASTG	1 cut(s)	499
VpaK11BI	GGWCC	3 cut(s)	193, 237, 603
XmaI	CCCGGG	1 cut(s)	52
XspI	CTAG	2 cut(s)	290, 480
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.