Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012147

Physical Location & Seq

Genomic Coordinates Forward (+)

5118380 .. 5119348

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1072800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGACTTTACCACCGTGACCGCCACCATCCAAACCCCAGATACGGACACCGAACCGCCGTCGCCGACGGACCCCAAATTCAACTTCTTCAGTGGCAGGTCCTTATCCTTCACCAGCGGCGCATTCCAGCCTCAGCCGAAGCGAACAAGGGTGGTTGCCTACAAAGAATGTCTCAAGAACCATGCTGCCAGCTTAGGTGGCCACGCTCTCGACGGTTGCGGCGAGTTCATGCCTTCCCCTTCCTCCAACCCAGCTGACCCCACCTCGCTAAAATGCGCCGCTTGTGGCTGTCACCGCAACTTCCACTGCCGTGATCAGTACAGACCCAAAAATAATGTTATTCGCAACCGCCTGCTACCAGCGCCGAAAACAGCTCACAACAACCACAGCTCAAGCTCCAGCCCGAGCTCCAGCCCCAACCCTACTTTGAGCCCGCAGTCTCCGCCGCCAGTCTCCCACTTGCCCCCCTCCTATTTCGCTGCCCCGCCGCAAATGCTACTTGCTCTCAGCTCCGGCTTTTCTGGTCCGCCCGATGAGCACCCCCACCAGCACCAGCTCAATCCGACGGCTGTGATGAAAACGGAGAAGTACCCAGGTGAGAAAAAGAGATCCAGAACAAAGTTCAGCCAGGAGCAAAAGGAAAAGATGTCGTCTTTTGCCGAGAAAGTCGGGTGGAGAGTGCAAAAGAGCGACGAAAGATCGGTGGAGGATTTTTGCAGCGAGGTGGGGATTGGGAGGGGAGTTTTTAAGGTTTGGATGCACAATAACAAGCACGGTCTCAGGAGGAGATTGGAGAGATCGGCCGGCGTAGGCGGCGGCGGGAATATGATTATTAACAGCAATGTCAGTGAGATCAACGGTGAGGGTGAAAGACATGGTTTTGACTCCATGAATGCTCACATCGCCGACAACAATGTCAATGCCAACCCCCTTCACCTTTCCAACAATGGGTCGTCTTCTTCGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

323

Amino Acids

35.07

Weight (kDa)

9.17

Isoelectric Point (pI)

67.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	52 - 105	7.7e-27	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69600 AT5G60480
fragaria_vesca	FvH4_4g31350
malus_domestica	MD13G1072300.v1.1 MD16G1072800.v1.1
prunus_persica	Prupe.1G274700_v2.0.a1
pyrus_communis	pycom13g06480 pycom16g06310
rosa_chinensis	RchiOBHm_Chr4g0439861
rosa_laevigata	RLG00000006232
rosa_multiflora	Rmu_co8191176.1_g000001 Rmu_sc0006473.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380760
rosa_rugosa	Rorug04G0321800
rosa_samantha	Rh4AG372800 Rh4BG385200 Rh4CG399700 Rh4DG379400
rosa_wichuraiana	Rw4G031870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	914
Acc36I	ACCTGC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	603
AcoI	YGGCCR	2 cut(s)	199, 801
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	2 cut(s)	320, 590
AfiI	CCNNNNNNNGG	2 cut(s)	43, 948
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	2 cut(s)	592, 627
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AleI	CACNNNNGTG	1 cut(s)	309
AluBI	AGCT	8 cut(s)	192, 254, 374, 390, 396, 408, 510, 556
AluI	AGCT	8 cut(s)	192, 254, 374, 390, 396, 408, 510, 556
Alw21I	GWGCWC	2 cut(s)	410, 540
Alw26I	GTCTC	4 cut(s)	176, 444, 457, 782
AlwI	GGATC	1 cut(s)	603
Ama87I	CYCGRG	1 cut(s)	403
AoxI	GGCC	2 cut(s)	199, 801
ApeKI	GCWGC	3 cut(s)	185, 479, 717
ApoI	RAATTY	1 cut(s)	77
AspLEI	GCGC	3 cut(s)	122, 278, 364
AspS9I	GGNCC	3 cut(s)	70, 99, 524
AsuHPI	GGTGA	6 cut(s)	103, 284, 608, 872, 878, 926
AvaI	CYCGRG	1 cut(s)	403
AvaII	GGWCC	3 cut(s)	70, 99, 524
BalI	TGGCCA	1 cut(s)	201
BanII	GRGCYC	2 cut(s)	410, 434
BbsI	GAAGAC	1 cut(s)	948
Bbv12I	GWGCWC	2 cut(s)	410, 540
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	172, 466, 729
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	3 cut(s)	43, 294, 582
BciT130I	CCWGG	2 cut(s)	594, 629
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	4 cut(s)	176, 444, 457, 782
BfoI	RGCGCY	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	87
Bme1390I	CCNGG	2 cut(s)	594, 629
Bme18I	GGWCC	3 cut(s)	70, 99, 524
BmeT110I	CYCGRG	1 cut(s)	403
BmgT120I	GGNCC	3 cut(s)	70, 99, 524
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	594, 629
BmsI	GCATC	1 cut(s)	747
BpiI	GAAGAC	1 cut(s)	948
BpmI	CTGGAG	2 cut(s)	382, 394
Bpu10I	CCTNAGC	2 cut(s)	132, 193
BpuEI	CTTGAG	2 cut(s)	158, 376
BsaI	GGTCTC	1 cut(s)	782
BsaJI	CCNNGG	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 948
Bse118I	RCCGGY	1 cut(s)	803
Bse1I	ACTGG	1 cut(s)	449
Bse3DI	GCAATG	1 cut(s)	847
BseBI	CCWGG	2 cut(s)	594, 629
BseDI	CCNNGG	1 cut(s)	592
BseGI	GGATG	2 cut(s)	27, 762
BseLI	CCNNNNNNNGG	2 cut(s)	43, 948
BseMI	GCAATG	1 cut(s)	847
BseMII	CTCAG	3 cut(s)	146, 520, 793
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	1 cut(s)	799
BseX3I	CGGCCG	1 cut(s)	801
BseXI	GCAGC	3 cut(s)	172, 466, 729
BseYI	CCCAGC	1 cut(s)	250
Bsh1285I	CGRYCG	1 cut(s)	804
BshFI	GGCC	2 cut(s)	201, 803
BsiEI	CGRYCG	1 cut(s)	804
BsiHKAI	GWGCWC	2 cut(s)	410, 540
BsiHKCI	CYCGRG	1 cut(s)	403
BsiSI	CCGG	2 cut(s)	513, 804
BslI	CCNNNNNNNGG	2 cut(s)	43, 948
BsmAI	GTCTC	4 cut(s)	176, 444, 457, 782
BsmI	GAATGC	2 cut(s)	122, 898
BsnI	GGCC	2 cut(s)	201, 803
Bso31I	GGTCTC	1 cut(s)	782
BsoBI	CYCGRG	1 cut(s)	403
Bsp1286I	GDGCHC	3 cut(s)	410, 434, 540
Bsp143I	GATC	5 cut(s)	313, 608, 698, 797, 852
BspANI	GGCC	2 cut(s)	201, 803
BspCNI	CTCAG	3 cut(s)	145, 519, 792
BspLI	GGNNCC	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	603
BspTNI	GGTCTC	1 cut(s)	782
BsrDI	GCAATG	1 cut(s)	847
BsrFI	RCCGGY	1 cut(s)	803
BsrI	ACTGG	1 cut(s)	449
BssAI	RCCGGY	1 cut(s)	803
BssECI	CCNNGG	1 cut(s)	592
BssMI	GATC	5 cut(s)	313, 608, 698, 797, 852
Bst2UI	CCWGG	2 cut(s)	594, 629
Bst4CI	ACNGT	4 cut(s)	16, 215, 776, 860
BstC8I	GCNNGC	4 cut(s)	190, 353, 434, 805
BstDEI	CTNAG	4 cut(s)	132, 193, 506, 779
BstF5I	GGATG	2 cut(s)	27, 762
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	3 cut(s)	122, 278, 364
BstKTI	GATC	5 cut(s)	316, 611, 701, 800, 855
BstMAI	GTCTC	4 cut(s)	176, 444, 457, 782
BstMBI	GATC	5 cut(s)	313, 608, 698, 797, 852
BstMCI	CGRYCG	1 cut(s)	804
BstMWI	GCNNNNNNNGC	8 cut(s)	198, 294, 361, 442, 493, 535, 813, 902
BstNI	CCWGG	2 cut(s)	594, 629
BstSCI	CCNGG	2 cut(s)	592, 627
BstV1I	GCAGC	3 cut(s)	172, 466, 729
BstV2I	GAAGAC	1 cut(s)	948
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
BstZI	CGGCCG	1 cut(s)	801
BsuRI	GGCC	2 cut(s)	201, 803
BtgZI	GCGATG	1 cut(s)	886
BtsCI	GGATG	2 cut(s)	27, 762
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	3 cut(s)	97, 304, 853
BveI	ACCTGC	1 cut(s)	87
Cac8I	GCNNGC	4 cut(s)	190, 353, 434, 805
CfoI	GCGC	3 cut(s)	122, 278, 364
Cfr10I	RCCGGY	1 cut(s)	803
Cfr13I	GGNCC	3 cut(s)	70, 99, 524
Csp6I	GTAC	2 cut(s)	319, 589
CviAII	CATG	4 cut(s)	182, 229, 875, 889
CviQI	GTAC	2 cut(s)	319, 589
DdeI	CTNAG	4 cut(s)	132, 193, 506, 779
DpnI	GATC	5 cut(s)	315, 610, 700, 799, 854
DpnII	GATC	5 cut(s)	313, 608, 698, 797, 852
DrdI	GACNNNNNNGTC	1 cut(s)	914
DseDI	GACNNNNNNGTC	1 cut(s)	914
EaeI	YGGCCR	2 cut(s)	199, 801
EagI	CGGCCG	1 cut(s)	801
EciI	GGCGGA	2 cut(s)	432, 516
Ecl136II	GAGCTC	1 cut(s)	408
EclXI	CGGCCG	1 cut(s)	801
Eco24I	GRGCYC	2 cut(s)	410, 434
Eco31I	GGTCTC	1 cut(s)	782
Eco47I	GGWCC	3 cut(s)	70, 99, 524
Eco52I	CGGCCG	1 cut(s)	801
Eco53kI	GAGCTC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	592, 627
EcoT38I	GRGCYC	2 cut(s)	410, 434
FaeI	CATG	4 cut(s)	185, 232, 878, 892
FaiI	YATR	5 cut(s)	183, 230, 827, 876, 890
FatI	CATG	4 cut(s)	181, 228, 874, 888
FauI	CCCGC	3 cut(s)	441, 492, 812
FbaI	TGATCA	1 cut(s)	313
FokI	GGATG	2 cut(s)	14, 769
FriOI	GRGCYC	2 cut(s)	410, 434
GlaI	GCGC	3 cut(s)	121, 277, 363
GsaI	CCCAGC	1 cut(s)	254
GsuI	CTGGAG	2 cut(s)	382, 394
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	201, 803
HapII	CCGG	2 cut(s)	513, 804
HhaI	GCGC	3 cut(s)	122, 278, 364
Hin1II	CATG	4 cut(s)	185, 232, 878, 892
Hin6I	GCGC	3 cut(s)	120, 276, 362
HinP1I	GCGC	3 cut(s)	120, 276, 362
HinfI	GANTC	1 cut(s)	884
HpaII	CCGG	2 cut(s)	513, 804
HphI	GGTGA	6 cut(s)	103, 284, 608, 872, 878, 926
Hpy188I	TCNGA	1 cut(s)	564
Hpy188III	TCNNGA	5 cut(s)	175, 209, 612, 781, 966
Hpy99I	CGWCG	6 cut(s)	64, 70, 215, 568, 695, 967
HpyAV	CCTTC	4 cut(s)	118, 243, 249, 941
HpyCH4III	ACNGT	4 cut(s)	16, 215, 776, 860
HpyCH4V	TGCA	3 cut(s)	682, 717, 760
HpyF10VI	GCNNNNNNNGC	8 cut(s)	198, 294, 361, 442, 493, 535, 813, 902
HpyF3I	CTNAG	4 cut(s)	132, 193, 506, 779
Hsp92II	CATG	4 cut(s)	185, 232, 878, 892
HspAI	GCGC	3 cut(s)	120, 276, 362
KroI	GCCGGC	1 cut(s)	803
KroNI	GCCGGC	1 cut(s)	805
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	313, 608, 698, 797, 852
LmnI	GCTCC	4 cut(s)	401, 413, 515, 631
Lsp1109I	GCAGC	3 cut(s)	172, 466, 729
LweI	GCATC	1 cut(s)	747
MaeIII	GTNAC	2 cut(s)	16, 290
MalI	GATC	5 cut(s)	315, 610, 700, 799, 854
MboI	GATC	5 cut(s)	313, 608, 698, 797, 852
MboII	GAAGA	3 cut(s)	79, 948, 951
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	3 cut(s)	410, 434, 540
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	1 cut(s)	77
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	878
MmeI	TCCRAC	3 cut(s)	270, 587, 966
MnlI	CCTC	9 cut(s)	141, 253, 274, 478, 700, 715, 729, 777, 856
Mox20I	TGGCCA	1 cut(s)	201
MroNI	GCCGGC	1 cut(s)	803
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	2 cut(s)	747, 834
MslI	CAYNNNNRTG	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	201
MspA1I	CMGCKG	2 cut(s)	117, 254
MspI	CCGG	2 cut(s)	513, 804
MspR9I	CCNGG	2 cut(s)	594, 629
Mva1269I	GAATGC	2 cut(s)	122, 898
MvaI	CCWGG	2 cut(s)	594, 629
MwoI	GCNNNNNNNGC	8 cut(s)	198, 294, 361, 442, 493, 535, 813, 902
NaeI	GCCGGC	1 cut(s)	805
NdeII	GATC	5 cut(s)	313, 608, 698, 797, 852
NgoMIV	GCCGGC	1 cut(s)	803
NlaIII	CATG	4 cut(s)	185, 232, 878, 892
NlaIV	GGNNCC	1 cut(s)	72
NmeAIII	GCCGAG	1 cut(s)	685
NmuCI	GTSAC	2 cut(s)	16, 290
OliI	CACNNNNGTG	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 959
PctI	GAATGC	2 cut(s)	122, 898
PdiI	GCCGGC	1 cut(s)	805
PleI	GAGTC	1 cut(s)	878
PpsI	GAGTC	1 cut(s)	878
PpuMI	RGGWCCY	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	410
Psp5II	RGGWCCY	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	592, 627
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	2 cut(s)	592, 627
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	3 cut(s)	70, 99, 524
PspPPI	RGGWCCY	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	608
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	320, 590
RsaNI	GTAC	2 cut(s)	319, 589
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	747, 834
Sau3AI	GATC	5 cut(s)	313, 608, 698, 797, 852
Sau96I	GGNCC	3 cut(s)	70, 99, 524
SchI	GAGTC	1 cut(s)	878
ScrFI	CCNGG	2 cut(s)	594, 629
SduI	GDGCHC	3 cut(s)	410, 434, 540
SfaNI	GCATC	1 cut(s)	747
SinI	GGWCC	3 cut(s)	70, 99, 524
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	2 cut(s)	173, 391
SmoI	CTYRAG	2 cut(s)	173, 391
Sse9I	AATT	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	410
StyD4I	CCNGG	2 cut(s)	592, 627
TaaI	ACNGT	4 cut(s)	16, 215, 776, 860
TaqI	TCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	77
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	7 cut(s)	120, 222, 281, 448, 490, 816, 819
Tru1I	TTAA	2 cut(s)	747, 834
Tru9I	TTAA	2 cut(s)	747, 834
TscAI	CASTG	3 cut(s)	97, 311, 853
TseFI	GTSAC	2 cut(s)	16, 290
TseI	GCWGC	3 cut(s)	185, 479, 717
Tsp45I	GTSAC	2 cut(s)	16, 290
TspDTI	ATGAA	3 cut(s)	217, 590, 905
TspGWI	ACGGA	3 cut(s)	59, 83, 596
TspRI	CASTG	3 cut(s)	97, 311, 853
VpaK11BI	GGWCC	3 cut(s)	70, 99, 524
XapI	RAATTY	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.