Rw4G031870

Zinc-finger homeodomain protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
59045513 .. 59047053
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G031870.1

Sequence Viewer

Length: 1134 bp
ATGACCAAGACAAAAAGGTCCCCATTCTTTGTAGAGAACTTTGAGCTTAACAAAACCCTAATATTTGATTCCCGATTCCCAACCCAATTCATGGACTATAAGCCCATTTCTACCACAGCCACAGCCACCGCCACCGCCACCATCAATACTCCAGACACAGACACTGAGCTCATCCCCACATCAGACCCCAAATCTGGCGCCTTTAGGTCCTTATCCTTCAACAACGGCCCACTCAAGCCCCGCCACCCACTTCCTCCGCCGCCTCATACGGCGGTTGTGTACCGAGAATGTTTGAAGAACCACGCGGCCAGCATCGGCGGCCACGCCCTCGACGGCTGCGGTGAGTTTTTCCCCAGCCCCATTTCCAACCCCGCCGACCCCACCTCGCTAAAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGACGCGCCTGACGAACCACGCGCGTTCACTCCTCCAAAGGCCCTTCTCGTCAGCCCTACTCCTCACCACCGCCTTCTTCCTCCGCCGCCAGCTCAGCACAGCTCAAGCCCAAGCCCAAGCCGGAGCACGAGCCCCGGCCCAAGCACCACGTTGAGCCCGCACTCTCCGCCGCCGGTCTCGCACGTGCCGCCCTCCTTCTTCGGCACACCGTCCCAGATGCTCCTCGCCCTCAGCTCCGCCGCGTTTATCGCGCCACCACCGTCGGATGAGAAGGTCCGGAATCCGACGGCTGGGAAGACGGGGAGGAAGAGATCGAGGACCAAGTTCAGCCAGGAGCAGAAGGACAAGATGTTCTGTTTTGCTGACAAACTAGGCTGGAAACTGCAGAGGAGCGAAGAGAAGTTCGTCGAGGATTTCTGCGACGGGATTGGGATTGGTCGGAACGTTTTTAAGGTTTGGATGCATAACAACAAGCATCACATGATGAAGAAGCAGAGGTTGTTGTCGTCGGCTGGGTTGATCAATGACGGTGACGACGGCGGTGACGCCGGCGGAGGAGCTAGCTTTGATTCCACTGCTGAGGAGAACAACAACAACAACAATGTGAATGTCATTATCGACTCCCACAATGAAAGTAGCAGAGATAATCATCACCACCAAAGGTTTTATCTTTCCAACAATGGGTCCTCTTCTTCGTCTTGA

Protein Analysis

377

Amino Acids

41.15

Weight (kDa)

9.03

Isoelectric Point (pI)

63.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 92 - 145 1.9e-27 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012147)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 91
AccII CGCG 7 cut(s) 305, 432, 437, 453, 455, 674, 683
AccIII TCCGGA 1 cut(s) 708
AclI AACGTT 1 cut(s) 876
AcoI YGGCCR 2 cut(s) 306, 319
AcvI CACGTG 1 cut(s) 616
AcyI GRCGYC 2 cut(s) 198, 978
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 4 cut(s) 91, 194, 722, 1113
AgsI TTSAA 2 cut(s) 220, 295
AjnI CCWGG 1 cut(s) 762
AloI GAACNNNNNNTCC 2 cut(s) 767, 799
AluBI AGCT 7 cut(s) 46, 169, 524, 534, 666, 992, 996
AluI AGCT 7 cut(s) 46, 169, 524, 534, 666, 992, 996
Alw21I GWGCWC 2 cut(s) 171, 560
Alw26I GTCTC 1 cut(s) 613
AlwNI CAGNNNCTG 1 cut(s) 164
Aor13HI TCCGGA 1 cut(s) 708
AoxI GGCC 5 cut(s) 226, 306, 319, 471, 568
ApeKI GCWGC 2 cut(s) 336, 408
AspLEI GCGC 5 cut(s) 200, 398, 439, 455, 685
AspS9I GGNCC 8 cut(s) 18, 207, 227, 472, 569, 706, 750, 1116
AsuC2I CCSGG 1 cut(s) 567
AsuHPI GGTGA 5 cut(s) 353, 488, 974, 986, 1076
AsuNHI GCTAGC 1 cut(s) 992
AvaII GGWCC 5 cut(s) 18, 207, 706, 750, 1116
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 3 cut(s) 171, 566, 590
BauI CACGAG 1 cut(s) 559
BbrPI CACGTG 1 cut(s) 616
BbsI GAAGAC 1 cut(s) 734
Bbv12I GWGCWC 2 cut(s) 171, 560
BbvCI CCTCAGC 2 cut(s) 662, 1011
BbvI GCAGC 2 cut(s) 323, 395
BccI CCATC 1 cut(s) 149
BceAI ACGGC 5 cut(s) 241, 285, 349, 735, 985
BciT130I CCWGG 1 cut(s) 764
BclI TGATCA 1 cut(s) 951
BcnI CCSGG 1 cut(s) 567
BcoDI GTCTC 1 cut(s) 613
BfaI CTAG 2 cut(s) 803, 993
BfmI CTRYAG 1 cut(s) 815
BfoI RGCGCY 1 cut(s) 201
BlpI GCTNAGC 1 cut(s) 525
Bme1390I CCNGG 2 cut(s) 567, 764
Bme18I GGWCC 5 cut(s) 18, 207, 706, 750, 1116
BmgT120I GGNCC 8 cut(s) 18, 207, 227, 472, 569, 706, 750, 1116
BmiI GGNNCC 3 cut(s) 20, 199, 1117
BmrFI CCNGG 2 cut(s) 567, 764
BmsI GCATC 4 cut(s) 321, 639, 882, 916
BmtI GCTAGC 1 cut(s) 996
BpiI GAAGAC 1 cut(s) 734
BpmI CTGGAG 1 cut(s) 135
Bpu10I CCTNAGC 2 cut(s) 662, 1011
Bpu1102I GCTNAGC 1 cut(s) 525
BpuEI CTTGAG 2 cut(s) 218, 520
BpuMI CCSGG 1 cut(s) 567
BsaAI YACGTR 1 cut(s) 616
BsaBI GATNNNNATC 1 cut(s) 1080
BsaHI GRCGYC 2 cut(s) 198, 978
BsaI GGTCTC 1 cut(s) 613
BsaJI CCNNGG 1 cut(s) 565
BsaWI WCCGGW 1 cut(s) 708
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 194, 722, 1113
Bse118I RCCGGY 2 cut(s) 604, 980
Bse8I GATNNNNATC 1 cut(s) 1080
BseAI TCCGGA 1 cut(s) 708
BseBI CCWGG 1 cut(s) 764
BseDI CCNNGG 1 cut(s) 565
BseGI GGATG 3 cut(s) 171, 703, 897
BseJI GATNNNNATC 1 cut(s) 1080
BseLI CCNNNNNNNGG 4 cut(s) 91, 194, 722, 1113
BseMII CTCAG 4 cut(s) 156, 539, 676, 1002
BseRI GAGGAG 6 cut(s) 453, 483, 644, 835, 1002, 1028
BseXI GCAGC 2 cut(s) 323, 395
BseYI CCCAGC 3 cut(s) 353, 722, 944
Bsh1236I CGCG 7 cut(s) 305, 432, 437, 453, 455, 674, 683
BshFI GGCC 5 cut(s) 228, 308, 321, 473, 570
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 2 cut(s) 171, 560
BsiSI CCGG 5 cut(s) 553, 567, 605, 709, 981
BslFI GGGAC 2 cut(s) 4, 628
BslI CCNNNNNNNGG 4 cut(s) 91, 194, 722, 1113
BsmAI GTCTC 1 cut(s) 613
BsmFI GGGAC 2 cut(s) 4, 628
BsnI GGCC 5 cut(s) 228, 308, 321, 473, 570
Bso31I GGTCTC 1 cut(s) 613
Bsp1286I GDGCHC 4 cut(s) 171, 560, 566, 590
Bsp13I TCCGGA 1 cut(s) 708
Bsp143I GATC 2 cut(s) 743, 951
Bsp1720I GCTNAGC 1 cut(s) 525
BspANI GGCC 5 cut(s) 228, 308, 321, 473, 570
BspCNI CTCAG 4 cut(s) 157, 538, 675, 1003
BspEI TCCGGA 1 cut(s) 708
BspFNI CGCG 7 cut(s) 305, 432, 437, 453, 455, 674, 683
BspLI GGNNCC 3 cut(s) 20, 199, 1117
BspMAI CTGCAG 1 cut(s) 819
BspOI GCTAGC 1 cut(s) 996
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 613
BsrFI RCCGGY 2 cut(s) 604, 980
BssAI RCCGGY 2 cut(s) 604, 980
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 2 cut(s) 743, 951
BssNI GRCGYC 2 cut(s) 198, 978
BssSI CACGAG 1 cut(s) 559
Bst2BI CACGAG 1 cut(s) 559
Bst2UI CCWGG 1 cut(s) 764
Bst4CI ACNGT 3 cut(s) 642, 693, 962
Bst6I CTCTTC 3 cut(s) 734, 822, 1126
BstACI GRCGYC 2 cut(s) 198, 978
BstBAI YACGTR 1 cut(s) 616
BstC8I GCNNGC 6 cut(s) 310, 403, 522, 590, 982, 994
BstDEI CTNAG 4 cut(s) 165, 525, 662, 1011
BstF5I GGATG 3 cut(s) 171, 703, 897
BstFNI CGCG 7 cut(s) 305, 432, 437, 453, 455, 674, 683
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 5 cut(s) 200, 398, 439, 455, 685
BstKTI GATC 2 cut(s) 746, 954
BstMAI GTCTC 1 cut(s) 613
BstMBI GATC 2 cut(s) 743, 951
BstMWI GCNNNNNNNGC 8 cut(s) 318, 402, 414, 526, 598, 610, 619, 680
BstNI CCWGG 1 cut(s) 764
BstSCI CCNGG 2 cut(s) 565, 762
BstSFI CTRYAG 1 cut(s) 815
BstUI CGCG 7 cut(s) 305, 432, 437, 453, 455, 674, 683
BstV1I GCAGC 2 cut(s) 323, 395
BstV2I GAAGAC 1 cut(s) 734
BsuRI GGCC 5 cut(s) 228, 308, 321, 473, 570
BtsCI GGATG 3 cut(s) 171, 703, 897
BtsI GCAGTG 1 cut(s) 1005
BtsIMutI CAGTG 2 cut(s) 162, 1005
Cac8I GCNNGC 6 cut(s) 310, 403, 522, 590, 982, 994
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 5 cut(s) 200, 398, 439, 455, 685
Cfr10I RCCGGY 2 cut(s) 604, 980
Cfr13I GGNCC 8 cut(s) 18, 207, 227, 472, 569, 706, 750, 1116
CseI GACGC 2 cut(s) 443, 986
Csp6I GTAC 1 cut(s) 280
CviAII CATG 2 cut(s) 91, 913
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 4 cut(s) 165, 525, 662, 1011
DinI GGCGCC 1 cut(s) 199
DpnI GATC 2 cut(s) 745, 953
DpnII GATC 2 cut(s) 743, 951
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 2 cut(s) 306, 319
Eam1104I CTCTTC 3 cut(s) 734, 822, 1126
EarI CTCTTC 3 cut(s) 734, 822, 1126
EciI GGCGGA 5 cut(s) 246, 504, 588, 658, 999
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 3 cut(s) 171, 566, 590
Eco31I GGTCTC 1 cut(s) 613
Eco47I GGWCC 5 cut(s) 18, 207, 706, 750, 1116
Eco53kI GAGCTC 1 cut(s) 169
Eco72I CACGTG 1 cut(s) 616
EcoICRI GAGCTC 1 cut(s) 169
EcoO109I RGGNCCY 4 cut(s) 18, 207, 472, 1116
EcoRII CCWGG 1 cut(s) 762
EcoT22I ATGCAT 1 cut(s) 897
EcoT38I GRGCYC 3 cut(s) 171, 566, 590
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
FaeI CATG 2 cut(s) 94, 916
FaiI YATR 5 cut(s) 92, 99, 267, 897, 914
FaqI GGGAC 2 cut(s) 4, 628
FatI CATG 2 cut(s) 90, 912
FauI CCCGC 3 cut(s) 248, 379, 597
FbaI TGATCA 1 cut(s) 951
FokI GGATG 3 cut(s) 158, 710, 904
FriOI GRGCYC 3 cut(s) 171, 566, 590
FspBI CTAG 2 cut(s) 803, 993
GlaI GCGC 5 cut(s) 199, 397, 438, 454, 684
GsaI CCCAGC 3 cut(s) 357, 726, 948
GsuI CTGGAG 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 5 cut(s) 228, 308, 321, 473, 570
HapII CCGG 5 cut(s) 553, 567, 605, 709, 981
HgaI GACGC 2 cut(s) 443, 986
HhaI GCGC 5 cut(s) 200, 398, 439, 455, 685
Hin1I GRCGYC 2 cut(s) 198, 978
Hin1II CATG 2 cut(s) 94, 916
Hin6I GCGC 5 cut(s) 198, 396, 437, 453, 683
HinP1I GCGC 5 cut(s) 198, 396, 437, 453, 683
HinfI GANTC 5 cut(s) 68, 75, 712, 1001, 1052
HpaII CCGG 5 cut(s) 553, 567, 605, 709, 981
HphI GGTGA 5 cut(s) 353, 488, 974, 986, 1076
Hpy166II GTNNAC 2 cut(s) 280, 459
Hpy188I TCNGA 4 cut(s) 184, 697, 717, 873
Hpy188III TCNNGA 4 cut(s) 72, 152, 709, 1131
Hpy8I GTNNAC 2 cut(s) 280, 459
Hpy99I CGWCG 8 cut(s) 335, 437, 697, 721, 842, 857, 943, 971
HpyAV CCTTC 6 cut(s) 226, 485, 515, 637, 697, 766
HpyCH4III ACNGT 3 cut(s) 642, 693, 962
HpyCH4IV ACGT 3 cut(s) 581, 615, 876
HpyCH4V TGCA 2 cut(s) 817, 895
HpyF10VI GCNNNNNNNGC 8 cut(s) 318, 402, 414, 526, 598, 610, 619, 680
HpyF3I CTNAG 4 cut(s) 165, 525, 662, 1011
HpySE526I ACGT 3 cut(s) 581, 615, 876
Hsp92I GRCGYC 2 cut(s) 198, 978
Hsp92II CATG 2 cut(s) 94, 916
HspAI GCGC 5 cut(s) 198, 396, 437, 453, 683
KasI GGCGCC 1 cut(s) 197
Kpn2I TCCGGA 1 cut(s) 708
KroI GCCGGC 1 cut(s) 980
KroNI GCCGGC 1 cut(s) 982
Ksp22I TGATCA 1 cut(s) 951
Kzo9I GATC 2 cut(s) 743, 951
LmnI GCTCC 6 cut(s) 555, 657, 671, 766, 822, 989
Lsp1109I GCAGC 2 cut(s) 323, 395
LweI GCATC 4 cut(s) 321, 639, 882, 916
MaeI CTAG 2 cut(s) 803, 993
MaeII ACGT 3 cut(s) 581, 615, 876
MaeIII GTNAC 2 cut(s) 962, 974
MalI GATC 2 cut(s) 745, 953
MboI GATC 2 cut(s) 743, 951
MboII GAAGA 9 cut(s) 307, 500, 622, 739, 751, 839, 931, 1113, 1116
MhlI GDGCHC 4 cut(s) 171, 560, 566, 590
MluCI AATT 1 cut(s) 86
Mly113I GGCGCC 1 cut(s) 198
MlyI GAGTC 1 cut(s) 1046
MmeI TCCRAC 5 cut(s) 390, 675, 740, 851, 1131
Mph1103I ATGCAT 1 cut(s) 897
MreI CGCCGGCG 1 cut(s) 980
MroI TCCGGA 1 cut(s) 708
MroNI GCCGGC 1 cut(s) 980
MseI TTAA 2 cut(s) 48, 882
MspI CCGG 5 cut(s) 553, 567, 605, 709, 981
MspR9I CCNGG 2 cut(s) 567, 764
MvaI CCWGG 1 cut(s) 764
MvnI CGCG 7 cut(s) 305, 432, 437, 453, 455, 674, 683
MwoI GCNNNNNNNGC 8 cut(s) 318, 402, 414, 526, 598, 610, 619, 680
NaeI GCCGGC 1 cut(s) 982
NarI GGCGCC 1 cut(s) 198
NciI CCSGG 1 cut(s) 567
NdeII GATC 2 cut(s) 743, 951
NgoMIV GCCGGC 1 cut(s) 980
NheI GCTAGC 1 cut(s) 992
NlaIII CATG 2 cut(s) 94, 916
NlaIV GGNNCC 3 cut(s) 20, 199, 1117
NmuCI GTSAC 2 cut(s) 962, 974
NsiI ATGCAT 1 cut(s) 897
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PdiI GCCGGC 1 cut(s) 982
PfeI GAWTC 4 cut(s) 68, 75, 712, 1001
PflMI CCANNNNNTGG 1 cut(s) 91
PleI GAGTC 1 cut(s) 1046
PluTI GGCGCC 1 cut(s) 201
PmaCI CACGTG 1 cut(s) 616
PmlI CACGTG 1 cut(s) 616
PpsI GAGTC 1 cut(s) 1046
Ppu21I YACGTR 1 cut(s) 616
PpuMI RGGWCCY 3 cut(s) 18, 207, 1116
Psp124BI GAGCTC 1 cut(s) 171
Psp1406I AACGTT 1 cut(s) 876
Psp5II RGGWCCY 3 cut(s) 18, 207, 1116
Psp6I CCWGG 1 cut(s) 762
PspCI CACGTG 1 cut(s) 616
PspFI CCCAGC 3 cut(s) 353, 722, 944
PspGI CCWGG 1 cut(s) 762
PspN4I GGNNCC 3 cut(s) 20, 199, 1117
PspPI GGNCC 8 cut(s) 18, 207, 227, 472, 569, 706, 750, 1116
PspPPI RGGWCCY 3 cut(s) 18, 207, 1116
PstI CTGCAG 1 cut(s) 819
PstNI CAGNNNCTG 1 cut(s) 164
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 48, 882
Sau3AI GATC 2 cut(s) 743, 951
Sau96I GGNCC 8 cut(s) 18, 207, 227, 472, 569, 706, 750, 1116
SchI GAGTC 1 cut(s) 1046
ScrFI CCNGG 2 cut(s) 567, 764
SduI GDGCHC 4 cut(s) 171, 560, 566, 590
SfaNI GCATC 4 cut(s) 321, 639, 882, 916
SfcI CTRYAG 1 cut(s) 815
SfoI GGCGCC 1 cut(s) 199
SgrAI CRCCGGYG 1 cut(s) 980
SinI GGWCC 5 cut(s) 18, 207, 706, 750, 1116
SmlI CTYRAG 2 cut(s) 233, 535
SmoI CTYRAG 2 cut(s) 233, 535
Sse9I AATT 1 cut(s) 86
SspDI GGCGCC 1 cut(s) 197
SspI AATATT 1 cut(s) 63
SspMI CTAG 2 cut(s) 803, 993
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 565, 762
TaaI ACNGT 3 cut(s) 642, 693, 962
TaiI ACGT 3 cut(s) 584, 618, 879
TaqI TCGA 4 cut(s) 330, 746, 840, 1050
TasI AATT 1 cut(s) 86
TfiI GAWTC 4 cut(s) 68, 75, 712, 1001
Tru1I TTAA 2 cut(s) 48, 882
Tru9I TTAA 2 cut(s) 48, 882
TscAI CASTG 2 cut(s) 169, 1012
TseFI GTSAC 2 cut(s) 962, 974
TseI GCWGC 2 cut(s) 336, 408
Tsp45I GTSAC 2 cut(s) 962, 974
TspDTI ATGAA 3 cut(s) 79, 932, 1077
TspRI CASTG 2 cut(s) 169, 1012
Van91I CCANNNNNTGG 1 cut(s) 91
VpaK11BI GGWCC 5 cut(s) 18, 207, 706, 750, 1116
XspI CTAG 2 cut(s) 803, 993
Zsp2I ATGCAT 1 cut(s) 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.