Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0012147

Physical Location & Seq

Genomic Coordinates Forward (+)

4048683 .. 4049627

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGACTTTACCACCGTCAACGCCACCATCCAAACCCCAGATACGGACACGGAACCGCCGTCGCCGTCGGACCCCAAATTCAACTTCTTCAGTGGCAGGTCCTTATCCTTCACCAGCGGCGCATTCCAGCCTCGGCCGACGCGAACAAGGGTGGTTGCCTACAAAGAATGTCTCAAGAACCATGCTGCCAGCTTAGGTGGCCACGCTCTCGACGGTTGCGGCGAGTTCATGCCTTCCCCCTCCTCCAACCCAGCTGACCCCACCTCGCTAAAATGCGCCGCTTGTGGCTGTCACCGCAACTTCCACTGCCGTGATCAGCACAGACCCAAAAATAATGCGCCGAAAACAGCTCACAACAACCACAGCTCAAGCTCCAGCCCCAACCCTACTTTGAGCCCGCAGTCTCCCCCGCCAGTCTCCCACTTGCCCCCCTCCTATTTCGCTTCCCCGCCGCAAATGCTACTCGCTCTCAGCTCCGGCTTTTCTGGTCCGCCCGATGAGCACCCCCACCAGCGCCAGCGCCAGCACCAGCTCAATCCGACGGCTGTGATGAAAACGGAGAAGTACCCAAGTGAGAAAAAGAGATCCAGAACAAAGTTCAGCCAGGAGCAGAAGGAAAAGATGTCGTCTTTTGCCGAGAAAGTCGGGTGGAGAGTGCAAAAGAGCGACGAAAGATCGGTGGAGGATTTTTGCAGCGAGGTGGGGATTGGGAGGGGAGTTTTTAAGGTTTGGATGCACAATAACAAGCACGGTCTCAGGAGGAGATTGGAGAGATCGGGCGGCGTAGGCGGCGGCGGGAATATGATTATTAACAGCAATGTCAGTGAGATCAACGGTGAGGGTGAAAGACTTGGTTTTGACTCCATGAATGCTCACATCGCCGACAACACTGTCAATGCCAACCCCCTTCACCTTTCCAACAATGGGTCGTCTTCTTCGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

315

Amino Acids

34.29

Weight (kDa)

9.2

Isoelectric Point (pI)

66.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	52 - 106	1.2e-26	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69600 AT5G60480
fragaria_vesca	FvH4_4g31350
malus_domestica	MD13G1072300.v1.1 MD16G1072800.v1.1
prunus_persica	Prupe.1G274700_v2.0.a1
pyrus_communis	pycom13g06480 pycom16g06310
rosa_chinensis	RchiOBHm_Chr4g0439861
rosa_laevigata	RLG00000006232
rosa_multiflora	Rmu_co8191176.1_g000001 Rmu_sc0006473.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380760
rosa_rugosa	Rorug04G0321800
rosa_samantha	Rh4AG372800 Rh4BG385200 Rh4CG399700 Rh4DG379400
rosa_wichuraiana	Rw4G031870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	890
Acc36I	ACCTGC	1 cut(s)	87
AccII	CGCG	1 cut(s)	142
AclWI	GGATC	1 cut(s)	579
AcoI	YGGCCR	2 cut(s)	134, 199
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	2 cut(s)	43, 924
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	603
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AleI	CACNNNNGTG	1 cut(s)	309
AluBI	AGCT	7 cut(s)	192, 254, 350, 366, 372, 474, 532
AluI	AGCT	7 cut(s)	192, 254, 350, 366, 372, 474, 532
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	4 cut(s)	176, 408, 421, 758
AlwI	GGATC	1 cut(s)	579
AoxI	GGCC	2 cut(s)	134, 199
ApeKI	GCWGC	2 cut(s)	185, 693
ApoI	RAATTY	1 cut(s)	77
AspLEI	GCGC	5 cut(s)	122, 278, 340, 516, 522
AspS9I	GGNCC	3 cut(s)	70, 99, 488
AsuHPI	GGTGA	5 cut(s)	103, 284, 848, 854, 902
AvaII	GGWCC	3 cut(s)	70, 99, 488
BalI	TGGCCA	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	924
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	172, 705
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	4 cut(s)	43, 49, 294, 558
BciT130I	CCWGG	1 cut(s)	605
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	4 cut(s)	176, 408, 421, 758
BfoI	RGCGCY	2 cut(s)	517, 523
BfuAI	ACCTGC	1 cut(s)	87
BisI	GCNGC	9 cut(s)	118, 186, 220, 279, 452, 694, 781, 790, 793
BlsI	GCNGC	9 cut(s)	119, 187, 221, 280, 453, 695, 782, 791, 794
Bme1390I	CCNGG	1 cut(s)	605
Bme18I	GGWCC	3 cut(s)	70, 99, 488
BmgT120I	GGNCC	3 cut(s)	70, 99, 488
BmiI	GGNNCC	2 cut(s)	54, 72
BmrFI	CCNGG	1 cut(s)	605
BmsI	GCATC	1 cut(s)	723
BpiI	GAAGAC	1 cut(s)	924
BpmI	CTGGAG	1 cut(s)	358
Bpu10I	CCTNAGC	1 cut(s)	193
BpuEI	CTTGAG	2 cut(s)	158, 352
BsaI	GGTCTC	1 cut(s)	758
BsaJI	CCNNGG	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 924
Bse1I	ACTGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	823
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	27, 738
BseLI	CCNNNNNNNGG	2 cut(s)	43, 924
BseMI	GCAATG	1 cut(s)	823
BseMII	CTCAG	2 cut(s)	484, 769
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	2 cut(s)	232, 775
BseX3I	CGGCCG	1 cut(s)	134
BseXI	GCAGC	2 cut(s)	172, 705
BseYI	CCCAGC	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	142
Bsh1285I	CGRYCG	1 cut(s)	137
BshFI	GGCC	2 cut(s)	136, 201
BsiEI	CGRYCG	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	1 cut(s)	477
BslI	CCNNNNNNNGG	2 cut(s)	43, 924
BsmAI	GTCTC	4 cut(s)	176, 408, 421, 758
BsmI	GAATGC	2 cut(s)	122, 874
BsnI	GGCC	2 cut(s)	136, 201
Bso31I	GGTCTC	1 cut(s)	758
Bsp1286I	GDGCHC	2 cut(s)	398, 504
Bsp143I	GATC	5 cut(s)	313, 584, 674, 773, 828
BspANI	GGCC	2 cut(s)	136, 201
BspCNI	CTCAG	2 cut(s)	483, 768
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	54, 72
BspMI	ACCTGC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	579
BspTNI	GGTCTC	1 cut(s)	758
BsrDI	GCAATG	1 cut(s)	823
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	5 cut(s)	313, 584, 674, 773, 828
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	5 cut(s)	16, 215, 752, 836, 892
BstC8I	GCNNGC	4 cut(s)	190, 398, 518, 524
BstDEI	CTNAG	3 cut(s)	193, 470, 755
BstF5I	GGATG	2 cut(s)	27, 738
BstFNI	CGCG	1 cut(s)	142
BstH2I	RGCGCY	2 cut(s)	517, 523
BstHHI	GCGC	5 cut(s)	122, 278, 340, 516, 522
BstKTI	GATC	5 cut(s)	316, 587, 677, 776, 831
BstMAI	GTCTC	4 cut(s)	176, 408, 421, 758
BstMBI	GATC	5 cut(s)	313, 584, 674, 773, 828
BstMCI	CGRYCG	1 cut(s)	137
BstMWI	GCNNNNNNNGC	7 cut(s)	198, 294, 457, 499, 786, 789, 878
BstNI	CCWGG	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	603
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	172, 705
BstV2I	GAAGAC	1 cut(s)	924
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
BstZI	CGGCCG	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	136, 201
BtgZI	GCGATG	1 cut(s)	862
BtsCI	GGATG	2 cut(s)	27, 738
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	4 cut(s)	97, 304, 829, 888
BveI	ACCTGC	1 cut(s)	87
Cac8I	GCNNGC	4 cut(s)	190, 398, 518, 524
CfoI	GCGC	5 cut(s)	122, 278, 340, 516, 522
Cfr13I	GGNCC	3 cut(s)	70, 99, 488
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	3 cut(s)	182, 229, 865
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	3 cut(s)	193, 470, 755
DpnI	GATC	5 cut(s)	315, 586, 676, 775, 830
DpnII	GATC	5 cut(s)	313, 584, 674, 773, 828
DrdI	GACNNNNNNGTC	1 cut(s)	890
DseDI	GACNNNNNNGTC	1 cut(s)	890
EaeI	YGGCCR	2 cut(s)	134, 199
EagI	CGGCCG	1 cut(s)	134
EciI	GGCGGA	1 cut(s)	480
EclXI	CGGCCG	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	398
Eco31I	GGTCTC	1 cut(s)	758
Eco47I	GGWCC	3 cut(s)	70, 99, 488
Eco52I	CGGCCG	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	603
EcoT38I	GRGCYC	1 cut(s)	398
FaeI	CATG	3 cut(s)	185, 232, 868
FaiI	YATR	4 cut(s)	183, 230, 803, 866
FatI	CATG	3 cut(s)	181, 228, 864
FauI	CCCGC	4 cut(s)	405, 417, 456, 788
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	9 cut(s)	118, 186, 220, 279, 452, 694, 781, 790, 793
FokI	GGATG	2 cut(s)	14, 745
FriOI	GRGCYC	1 cut(s)	398
Fsp4HI	GCNGC	9 cut(s)	118, 186, 220, 279, 452, 694, 781, 790, 793
GlaI	GCGC	5 cut(s)	121, 277, 339, 515, 521
GluI	GCNGC	9 cut(s)	118, 186, 220, 279, 452, 694, 781, 790, 793
GsaI	CCCAGC	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	358
HaeII	RGCGCY	2 cut(s)	517, 523
HaeIII	GGCC	2 cut(s)	136, 201
HapII	CCGG	1 cut(s)	477
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	5 cut(s)	122, 278, 340, 516, 522
Hin1II	CATG	3 cut(s)	185, 232, 868
Hin6I	GCGC	5 cut(s)	120, 276, 338, 514, 520
HinP1I	GCGC	5 cut(s)	120, 276, 338, 514, 520
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	1 cut(s)	860
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	5 cut(s)	103, 284, 848, 854, 902
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	70, 540
Hpy188III	TCNNGA	5 cut(s)	175, 209, 588, 757, 942
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	7 cut(s)	64, 70, 142, 215, 544, 671, 943
HpyAV	CCTTC	4 cut(s)	118, 243, 607, 917
HpyCH4III	ACNGT	5 cut(s)	16, 215, 752, 836, 892
HpyCH4V	TGCA	3 cut(s)	658, 693, 736
HpyF10VI	GCNNNNNNNGC	7 cut(s)	198, 294, 457, 499, 786, 789, 878
HpyF3I	CTNAG	3 cut(s)	193, 470, 755
Hsp92II	CATG	3 cut(s)	185, 232, 868
HspAI	GCGC	5 cut(s)	120, 276, 338, 514, 520
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	313, 584, 674, 773, 828
LmnI	GCTCC	3 cut(s)	377, 479, 607
Lsp1109I	GCAGC	2 cut(s)	172, 705
LweI	GCATC	1 cut(s)	723
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	5 cut(s)	315, 586, 676, 775, 830
MboI	GATC	5 cut(s)	313, 584, 674, 773, 828
MboII	GAAGA	3 cut(s)	79, 924, 927
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	2 cut(s)	398, 504
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	1 cut(s)	77
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	854
MmeI	TCCRAC	4 cut(s)	48, 270, 563, 942
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	2 cut(s)	723, 810
MslI	CAYNNNNRTG	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	201
MspA1I	CMGCKG	2 cut(s)	117, 254
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	1 cut(s)	605
Mva1269I	GAATGC	2 cut(s)	122, 874
MvaI	CCWGG	1 cut(s)	605
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	7 cut(s)	198, 294, 457, 499, 786, 789, 878
NdeII	GATC	5 cut(s)	313, 584, 674, 773, 828
NlaIII	CATG	3 cut(s)	185, 232, 868
NlaIV	GGNNCC	2 cut(s)	54, 72
NmeAIII	GCCGAG	2 cut(s)	112, 661
NmuCI	GTSAC	1 cut(s)	290
OliI	CACNNNNGTG	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	4 cut(s)	56, 139, 219, 935
PctI	GAATGC	2 cut(s)	122, 874
PkrI	GCNGC	9 cut(s)	119, 187, 221, 280, 453, 695, 782, 791, 794
PleI	GAGTC	1 cut(s)	854
PpsI	GAGTC	1 cut(s)	854
PpuMI	RGGWCCY	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	2 cut(s)	54, 72
PspPI	GGNCC	3 cut(s)	70, 99, 488
PspPPI	RGGWCCY	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	584
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	723, 810
SatI	GCNGC	9 cut(s)	118, 186, 220, 279, 452, 694, 781, 790, 793
Sau3AI	GATC	5 cut(s)	313, 584, 674, 773, 828
Sau96I	GGNCC	3 cut(s)	70, 99, 488
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	1 cut(s)	605
SduI	GDGCHC	2 cut(s)	398, 504
SfaNI	GCATC	1 cut(s)	723
SinI	GGWCC	3 cut(s)	70, 99, 488
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	2 cut(s)	173, 367
SmoI	CTYRAG	2 cut(s)	173, 367
Sse9I	AATT	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	603
TaaI	ACNGT	5 cut(s)	16, 215, 752, 836, 892
TaqI	TCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	77
TauI	GCSGC	7 cut(s)	120, 222, 281, 454, 783, 792, 795
Tru1I	TTAA	2 cut(s)	723, 810
Tru9I	TTAA	2 cut(s)	723, 810
TscAI	CASTG	4 cut(s)	97, 311, 829, 895
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	2 cut(s)	185, 693
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	217, 566, 881
TspGWI	ACGGA	3 cut(s)	59, 65, 572
TspRI	CASTG	4 cut(s)	97, 311, 829, 895
VpaK11BI	GGWCC	3 cut(s)	70, 99, 488
XapI	RAATTY	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.