Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0012147

Physical Location & Seq

Genomic Coordinates Forward (+)

5088637 .. 5089638

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1072300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAACTTTACCACCGTCACCGCCACCATCCAAACCCCAGATACGGACACCGAACCGCCCTCGCCGTCGGACCCCAAATCCAACTTCTTCAGCAGCAGGTCCTTATCCTTCACCAACGGCGCGTTCCAGCCTCAGTCGACGCCAACAATGGTGGTTGCCTACAAAGAATGTCTCAAGAACCATGCTGCCAGCTTAGGCGGCCATGCTCTCGACGGTTGCGGCGAGTTCATGCCTTCCCCCTCCTCCAACCCAGCTGACCCGACCTCGCTAAAATGCGCCGCTTGTGGCTGTCACCGCAACTTCCACCGCCGTGACCAGTACAGACCCAAAAGTAATGTTATTCGCAACCCCCACCGCCTGCTACCGGCGCCGAAACCAGCTCACTACAACCACAGCTCAAGCCCCAGCCCGAGCTCGAGCCCCAACCCAACTTTGAGCCCGCAGTCTCCACCGCCAGTCTCCCACTTGCCCCCCTCCTATTTCGCTTCCCCGCCGCAAATGCTGCTCGCTCTCAGTTCCGGCTTCTCTGGGCCGTCTGATGAGCACCCCCACCAGCACCAACTCAATCCGACGGCTGTGAAGAAAACGGAGAAGTACCCAGGTGAGAAAAAGAGATCCAGAACAAGGTTCAGCCAAGAGCAGAAGGAAAAGATGTTGTCTTTTGCCGAGAAAGTGGGGTGGAGATTGCAAAAGAGCGAAGAAAGACTGGTGGAGGATTTCTGCAGCGAGGTGGGGATTGGGAGGGGAGTTTTCAAGGTTTGGATGCACAATAACAAGCACGGTCGGAGGAGATTGGAGAGATTGGGCAGCGGAAACGGCAGCTTAGGCGACGGTGGGAATATGAACAAAAATGTCAGTGAGATCAACGGTGATGGTGAAAGACTTGGTTTTGACTCCATGAATGCTCACATCGCCAGCTACAATGTCAATGCCAACCCCCTGAACGAAGGCAGCAGAGCAAGTTTCCACCTTTCCACCAATGGGTCGTCGTCTTCGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

334

Amino Acids

36.31

Weight (kDa)

9.3

Isoelectric Point (pI)

67.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	52 - 106	1.2e-28	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69600 AT5G60480
fragaria_vesca	FvH4_4g31350
malus_domestica	MD13G1072300.v1.1 MD16G1072800.v1.1
prunus_persica	Prupe.1G274700_v2.0.a1
pyrus_communis	pycom13g06480 pycom16g06310
rosa_chinensis	RchiOBHm_Chr4g0439861
rosa_laevigata	RLG00000006232
rosa_multiflora	Rmu_co8191176.1_g000001 Rmu_sc0006473.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380760
rosa_rugosa	Rorug04G0321800
rosa_samantha	Rh4AG372800 Rh4BG385200 Rh4CG399700 Rh4DG379400
rosa_wichuraiana	Rw4G031870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	87
AccB1I	GGYRCC	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	137
AccII	CGCG	1 cut(s)	122
AclWI	GGATC	1 cut(s)	609
AcoI	YGGCCR	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	73
AcyI	GRCGYC	2 cut(s)	140, 368
AfaI	GTAC	2 cut(s)	320, 596
AfiI	CCNNNNNNNGG	4 cut(s)	43, 364, 624, 981
AgsI	TTSAA	1 cut(s)	754
AjnI	CCWGG	1 cut(s)	598
AjuI	GAANNNNNNNTTGG	4 cut(s)	68, 100, 107, 139
AleI	CACNNNNGTG	1 cut(s)	309
AluBI	AGCT	7 cut(s)	192, 254, 380, 396, 414, 822, 918
AluI	AGCT	7 cut(s)	192, 254, 380, 396, 414, 822, 918
Alw21I	GWGCWC	2 cut(s)	416, 546
Alw26I	GTCTC	3 cut(s)	176, 450, 463
AlwI	GGATC	1 cut(s)	609
Ama87I	CYCGRG	2 cut(s)	409, 415
AoxI	GGCC	2 cut(s)	199, 530
ApeKI	GCWGC	7 cut(s)	93, 185, 502, 723, 807, 819, 951
AspLEI	GCGC	3 cut(s)	122, 278, 370
AspS9I	GGNCC	3 cut(s)	70, 99, 530
AsuHPI	GGTGA	6 cut(s)	10, 103, 284, 614, 881, 887
AvaI	CYCGRG	2 cut(s)	409, 415
AvaII	GGWCC	2 cut(s)	70, 99
BanI	GGYRCC	1 cut(s)	367
BanII	GRGCYC	3 cut(s)	416, 422, 440
BbsI	GAAGAC	1 cut(s)	984
Bbv12I	GWGCWC	2 cut(s)	416, 546
BbvI	GCAGC	7 cut(s)	105, 172, 489, 735, 819, 831, 963
BccI	CCATC	2 cut(s)	35, 866
BceAI	ACGGC	6 cut(s)	49, 133, 294, 517, 588, 832
BciT130I	CCWGG	1 cut(s)	600
BcoDI	GTCTC	3 cut(s)	176, 450, 463
BfmI	CTRYAG	1 cut(s)	721
BfoI	RGCGCY	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	600
Bme18I	GGWCC	2 cut(s)	70, 99
BmeT110I	CYCGRG	2 cut(s)	409, 415
BmgT120I	GGNCC	3 cut(s)	70, 99, 530
BmiI	GGNNCC	2 cut(s)	72, 369
BmrFI	CCNGG	1 cut(s)	600
BmsI	GCATC	1 cut(s)	753
BpiI	GAAGAC	1 cut(s)	984
Bpu10I	CCTNAGC	2 cut(s)	193, 823
BpuEI	CTTGAG	2 cut(s)	158, 382
BsaHI	GRCGYC	2 cut(s)	140, 368
BsaJI	CCNNGG	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 364, 624, 981
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	3 cut(s)	316, 455, 711
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	2 cut(s)	27, 768
BseLI	CCNNNNNNNGG	4 cut(s)	43, 364, 624, 981
BseMII	CTCAG	2 cut(s)	146, 526
BseNI	ACTGG	3 cut(s)	316, 455, 711
BseRI	GAGGAG	2 cut(s)	232, 802
BseXI	GCAGC	7 cut(s)	105, 172, 489, 735, 819, 831, 963
BseYI	CCCAGC	2 cut(s)	250, 404
Bsh1236I	CGCG	1 cut(s)	122
Bsh1285I	CGRYCG	1 cut(s)	784
BshFI	GGCC	2 cut(s)	201, 532
BshNI	GGYRCC	1 cut(s)	367
BsiEI	CGRYCG	1 cut(s)	784
BsiHKAI	GWGCWC	2 cut(s)	416, 546
BsiHKCI	CYCGRG	2 cut(s)	409, 415
BsiSI	CCGG	2 cut(s)	365, 519
BslI	CCNNNNNNNGG	4 cut(s)	43, 364, 624, 981
BsmAI	GTCTC	3 cut(s)	176, 450, 463
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	2 cut(s)	201, 532
BsoBI	CYCGRG	2 cut(s)	409, 415
Bsp1286I	GDGCHC	4 cut(s)	416, 422, 440, 546
Bsp143I	GATC	2 cut(s)	614, 861
BspANI	GGCC	2 cut(s)	201, 532
BspCNI	CTCAG	2 cut(s)	145, 525
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	72, 369
BspMAI	CTGCAG	1 cut(s)	725
BspMI	ACCTGC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	609
BspT107I	GGYRCC	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	364
BsrI	ACTGG	3 cut(s)	316, 455, 711
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	2 cut(s)	614, 861
BssNI	GRCGYC	2 cut(s)	140, 368
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	5 cut(s)	16, 215, 782, 833, 869
BstACI	GRCGYC	2 cut(s)	140, 368
BstAPI	GCANNNNNTGC	1 cut(s)	502
BstC8I	GCNNGC	5 cut(s)	190, 359, 440, 507, 916
BstDEI	CTNAG	4 cut(s)	132, 193, 512, 823
BstF5I	GGATG	2 cut(s)	27, 768
BstFNI	CGCG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	3 cut(s)	122, 278, 370
BstKTI	GATC	2 cut(s)	617, 864
BstMAI	GTCTC	3 cut(s)	176, 450, 463
BstMBI	GATC	2 cut(s)	614, 861
BstMCI	CGRYCG	1 cut(s)	784
BstMWI	GCNNNNNNNGC	8 cut(s)	198, 294, 367, 499, 502, 816, 825, 911
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	598
BstSFI	CTRYAG	1 cut(s)	721
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	7 cut(s)	105, 172, 489, 735, 819, 831, 963
BstV2I	GAAGAC	1 cut(s)	984
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
BsuRI	GGCC	2 cut(s)	201, 532
BtgZI	GCGATG	1 cut(s)	895
BtsCI	GGATG	2 cut(s)	27, 768
BtsIMutI	CAGTG	1 cut(s)	862
BveI	ACCTGC	1 cut(s)	87
Cac8I	GCNNGC	5 cut(s)	190, 359, 440, 507, 916
CfoI	GCGC	3 cut(s)	122, 278, 370
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	3 cut(s)	70, 99, 530
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	319, 595
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviAII	CATG	4 cut(s)	182, 203, 229, 898
CviQI	GTAC	2 cut(s)	319, 595
DdeI	CTNAG	4 cut(s)	132, 193, 512, 823
DinI	GGCGCC	1 cut(s)	369
DpnI	GATC	2 cut(s)	616, 863
DpnII	GATC	2 cut(s)	614, 861
EaeI	YGGCCR	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	414
Eco24I	GRGCYC	3 cut(s)	416, 422, 440
Eco47I	GGWCC	2 cut(s)	70, 99
Eco53kI	GAGCTC	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	73
Eco88I	CYCGRG	2 cut(s)	409, 415
EcoICRI	GAGCTC	1 cut(s)	414
EcoO109I	RGGNCCY	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	598
EcoT38I	GRGCYC	3 cut(s)	416, 422, 440
EgeI	GGCGCC	1 cut(s)	369
EheI	GGCGCC	1 cut(s)	369
FaeI	CATG	4 cut(s)	185, 206, 232, 901
FaiI	YATR	5 cut(s)	183, 204, 230, 842, 899
FatI	CATG	4 cut(s)	181, 202, 228, 897
FauI	CCCGC	2 cut(s)	447, 498
FblI	GTMKAC	1 cut(s)	137
FokI	GGATG	2 cut(s)	14, 775
FriOI	GRGCYC	3 cut(s)	416, 422, 440
GlaI	GCGC	3 cut(s)	121, 277, 369
GsaI	CCCAGC	2 cut(s)	254, 408
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	201, 532
HapII	CCGG	2 cut(s)	365, 519
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	3 cut(s)	122, 278, 370
Hin1I	GRCGYC	2 cut(s)	140, 368
Hin1II	CATG	4 cut(s)	185, 206, 232, 901
Hin6I	GCGC	3 cut(s)	120, 276, 368
HinP1I	GCGC	3 cut(s)	120, 276, 368
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	1 cut(s)	893
HpaII	CCGG	2 cut(s)	365, 519
HphI	GGTGA	6 cut(s)	10, 103, 284, 614, 881, 887
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	4 cut(s)	70, 538, 570, 786
Hpy188III	TCNNGA	4 cut(s)	175, 209, 618, 999
Hpy8I	GTNNAC	1 cut(s)	138
Hpy99I	CGWCG	7 cut(s)	70, 142, 215, 574, 833, 991, 1000
HpyAV	CCTTC	4 cut(s)	118, 243, 637, 941
HpyCH4III	ACNGT	5 cut(s)	16, 215, 782, 833, 869
HpyCH4V	TGCA	3 cut(s)	688, 723, 766
HpyF10VI	GCNNNNNNNGC	8 cut(s)	198, 294, 367, 499, 502, 816, 825, 911
HpyF3I	CTNAG	4 cut(s)	132, 193, 512, 823
Hsp92I	GRCGYC	2 cut(s)	140, 368
Hsp92II	CATG	4 cut(s)	185, 206, 232, 901
HspAI	GCGC	3 cut(s)	120, 276, 368
KasI	GGCGCC	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	614, 861
Lsp1109I	GCAGC	7 cut(s)	105, 172, 489, 735, 819, 831, 963
LweI	GCATC	1 cut(s)	753
MaeIII	GTNAC	3 cut(s)	16, 290, 311
MalI	GATC	2 cut(s)	616, 863
MboI	GATC	2 cut(s)	614, 861
MboII	GAAGA	4 cut(s)	79, 592, 710, 984
MflI	RGATCY	1 cut(s)	614
MhlI	GDGCHC	4 cut(s)	416, 422, 440, 546
Mly113I	GGCGCC	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	887
MmeI	TCCRAC	5 cut(s)	48, 105, 270, 593, 764
MslI	CAYNNNNRTG	1 cut(s)	309
MspA1I	CMGCKG	2 cut(s)	254, 810
MspI	CCGG	2 cut(s)	365, 519
MspR9I	CCNGG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	907
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	8 cut(s)	198, 294, 367, 499, 502, 816, 825, 911
NarI	GGCGCC	1 cut(s)	368
NdeII	GATC	2 cut(s)	614, 861
NlaIII	CATG	4 cut(s)	185, 206, 232, 901
NlaIV	GGNNCC	2 cut(s)	72, 369
NmeAIII	GCCGAG	1 cut(s)	691
NmuCI	GTSAC	3 cut(s)	16, 290, 311
OliI	CACNNNNGTG	1 cut(s)	309
PaeR7I	CTCGAG	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 992, 995
PctI	GAATGC	1 cut(s)	907
PleI	GAGTC	1 cut(s)	887
PluTI	GGCGCC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	887
PpuMI	RGGWCCY	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	598
PspFI	CCCAGC	2 cut(s)	250, 404
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	72, 369
PspPI	GGNCC	3 cut(s)	70, 99, 530
PspPPI	RGGWCCY	1 cut(s)	99
PspXI	VCTCGAGB	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	725
PsuI	RGATCY	1 cut(s)	614
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	320, 596
RsaNI	GTAC	2 cut(s)	319, 595
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	416
SalI	GTCGAC	1 cut(s)	136
Sau3AI	GATC	2 cut(s)	614, 861
Sau96I	GGNCC	3 cut(s)	70, 99, 530
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	4 cut(s)	416, 422, 440, 546
SfaNI	GCATC	1 cut(s)	753
SfcI	CTRYAG	1 cut(s)	721
SfoI	GGCGCC	1 cut(s)	369
Sfr274I	CTCGAG	1 cut(s)	415
SinI	GGWCC	2 cut(s)	70, 99
SlaI	CTCGAG	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	3 cut(s)	173, 397, 415
SmoI	CTYRAG	3 cut(s)	173, 397, 415
SspDI	GGCGCC	1 cut(s)	367
SstI	GAGCTC	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	598
TaaI	ACNGT	5 cut(s)	16, 215, 782, 833, 869
TaqI	TCGA	3 cut(s)	137, 210, 416
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	4 cut(s)	201, 222, 281, 496
TscAI	CASTG	1 cut(s)	862
TseFI	GTSAC	3 cut(s)	16, 290, 311
TseI	GCWGC	7 cut(s)	93, 185, 502, 723, 807, 819, 951
Tsp45I	GTSAC	3 cut(s)	16, 290, 311
TspDTI	ATGAA	4 cut(s)	17, 217, 857, 914
TspGWI	ACGGA	2 cut(s)	59, 602
TspRI	CASTG	1 cut(s)	862
VpaK11BI	GGWCC	2 cut(s)	70, 99
XhoI	CTCGAG	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.