Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012147

Physical Location & Seq

Genomic Coordinates Reverse (-)

28058395 .. 28059444

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G274700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGACTTTACCAGCGCTAATCACCTCACACCCACAGCCACCACCATCAAAACCCCAGACACGGACACTGAGCCCCCATCACCATCAGAACCCAAATCCATTTCAAACAGGTCCTTATCTTTCCCCAACGGCTCTCTCAAGCCTCACCATCCCACAATCCCGCCGCCGCAACCGCAACCGCCACCAACAATGGCGGTTGCCTACAAAGAGTGCCTCAAGAACCATGCAGCTAGCTTGGGTGGCCATGCTCTAGATGGGTGTGGTGAGTTCATGCCCAGCCCCTCTTCCAACCCCATGGACCCCACCTCGCTAAAATGCGCCGCTTGTGGCTGCCACCGGAACTTCCACCGCCGTGACCAGCACCGACCCAAAACTGTTCTCAGCCACCACCGCCTCTTGCTGCCAGCGCCACCAACTCATCACCACCACCACAGCTCCAGCCCAAGCCCAACCCAAAGCCCCGTTTCGAGCCAAGGCCCAACTTTGAGCCCACAGTCTCCGCCTCCCGTCTCACACTTGCCACCCTCCTATTTTGCTTCCCCACCCCAAATGTTGCTGGCTCTCAGCAACGGCGTTTCTGGGCCGTCCGATGGGCACCACCACGGTCTCCACCCAACGACTATGAAAGCTGAGAAGTACCCTAATGAGAAAAAGAGATCCAGGACCAAGTTCAGCCAGGAACAGAAGGAAAAGATGAATTTGTTTGCTGAGAAAGTGGGTTGGAGAATGCAAAGGAGTGACGAGAGGTTGGTGGAGGACTTCTGCAATGAGGTTGGGGTCCGTAGAGGGGTGTTCAAGGTTTGGATGCACAATAACAAGCACGGTCTGAAGAAGAGATCAGAGAGATCAGGTGATGGCGGTGAGCGGATGATTATTAGCAATGTCAAATACGAGACCAGTAATGGAGATGATGAGGGTTGTGGCAGAGTTGGCTTCGACTCCATTGTTAATGCTCAAACCACCAGCTACAATGTCAATGCCACACCCCAAAATGGAGGTACCAGAGCAAGTTTTCATCTTTCCAATAATGGGTCGTCTTCTTCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

350

Amino Acids

38.08

Weight (kDa)

9.23

Isoelectric Point (pI)

65.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69600 AT5G60480
fragaria_vesca	FvH4_4g31350
malus_domestica	MD13G1072300.v1.1 MD16G1072800.v1.1
prunus_persica	Prupe.1G274700_v2.0.a1
pyrus_communis	pycom13g06480 pycom16g06310
rosa_chinensis	RchiOBHm_Chr4g0439861
rosa_laevigata	RLG00000006232
rosa_multiflora	Rmu_co8191176.1_g000001 Rmu_sc0006473.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380760
rosa_rugosa	Rorug04G0321800
rosa_samantha	Rh4AG372800 Rh4BG385200 Rh4CG399700 Rh4DG379400
rosa_wichuraiana	Rw4G031870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	998
AccB1I	GGYRCC	2 cut(s)	594, 998
AccBSI	CCGCTC	1 cut(s)	865
AclWI	GGATC	1 cut(s)	651
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	697
AcuI	CTGAAG	1 cut(s)	848
AfaI	GTAC	2 cut(s)	638, 1000
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	5 cut(s)	61, 590, 787, 992, 1029
AgsI	TTSAA	2 cut(s)	105, 796
AjnI	CCWGG	2 cut(s)	659, 675
AleI	CACNNNNGTG	1 cut(s)	351
AluBI	AGCT	5 cut(s)	230, 234, 435, 629, 966
AluI	AGCT	5 cut(s)	230, 234, 435, 629, 966
Alw26I	GTCTC	4 cut(s)	501, 514, 611, 887
AlwI	GGATC	1 cut(s)	651
Aor51HI	AGCGCT	1 cut(s)	16
AoxI	GGCC	3 cut(s)	241, 475, 581
ApeKI	GCWGC	3 cut(s)	227, 330, 400
ApoI	RAATTY	1 cut(s)	697
Asp718I	GGTACC	1 cut(s)	998
AspLEI	GCGC	3 cut(s)	17, 320, 409
AspS9I	GGNCC	6 cut(s)	111, 298, 476, 581, 663, 778
AsuHPI	GGTGA	7 cut(s)	14, 72, 137, 275, 413, 863, 872
AsuNHI	GCTAGC	1 cut(s)	230
AvaII	GGWCC	4 cut(s)	111, 298, 663, 778
BaeGI	GKGCMC	1 cut(s)	597
BalI	TGGCCA	1 cut(s)	243
BanI	GGYRCC	2 cut(s)	594, 998
BanII	GRGCYC	2 cut(s)	75, 491
BbsI	GAAGAC	1 cut(s)	1029
BbvI	GCAGC	3 cut(s)	239, 317, 387
BccI	CCATC	7 cut(s)	53, 85, 91, 156, 248, 584, 848
BceAI	ACGGC	4 cut(s)	145, 336, 568, 586
BciT130I	CCWGG	2 cut(s)	661, 677
BcoDI	GTCTC	4 cut(s)	501, 514, 611, 887
BfaI	CTAG	2 cut(s)	231, 251
BfoI	RGCGCY	2 cut(s)	18, 410
BisI	GCNGC	6 cut(s)	164, 167, 228, 321, 331, 401
BlsI	GCNGC	6 cut(s)	165, 168, 229, 322, 332, 402
Bme1390I	CCNGG	2 cut(s)	661, 677
Bme18I	GGWCC	4 cut(s)	111, 298, 663, 778
BmgT120I	GGNCC	6 cut(s)	111, 298, 476, 581, 663, 778
BmiI	GGNNCC	4 cut(s)	300, 596, 779, 1000
BmrFI	CCNGG	2 cut(s)	661, 677
BmsI	GCATC	1 cut(s)	795
BmtI	GCTAGC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	1029
BpmI	CTGGAG	1 cut(s)	421
BpuEI	CTTGAG	2 cut(s)	122, 200
BsaI	GGTCTC	2 cut(s)	611, 887
BsaJI	CCNNGG	3 cut(s)	294, 472, 601
BsaWI	WCCGGW	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 590, 787, 992, 1029
Bse1I	ACTGG	1 cut(s)	897
Bse3DI	GCAATG	2 cut(s)	772, 886
BseBI	CCWGG	2 cut(s)	661, 677
BseDI	CCNNGG	3 cut(s)	294, 472, 601
BseGI	GGATG	3 cut(s)	148, 810, 873
BseLI	CCNNNNNNNGG	5 cut(s)	61, 590, 787, 992, 1029
BseMI	GCAATG	2 cut(s)	772, 886
BseMII	CTCAG	5 cut(s)	60, 394, 577, 621, 699
BseNI	ACTGG	1 cut(s)	897
BseSI	GKGCMC	1 cut(s)	597
BseXI	GCAGC	3 cut(s)	239, 317, 387
BseYI	CCCAGC	1 cut(s)	275
BshFI	GGCC	3 cut(s)	243, 477, 583
BshNI	GGYRCC	2 cut(s)	594, 998
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	5 cut(s)	61, 590, 787, 992, 1029
BsmAI	GTCTC	4 cut(s)	501, 514, 611, 887
BsmBI	CGTCTC	1 cut(s)	514
BsmI	GAATGC	1 cut(s)	732
BsnI	GGCC	3 cut(s)	243, 477, 583
Bso31I	GGTCTC	2 cut(s)	611, 887
Bsp1286I	GDGCHC	3 cut(s)	75, 491, 597
Bsp143I	GATC	3 cut(s)	656, 836, 845
Bsp19I	CCATGG	1 cut(s)	294
BspANI	GGCC	3 cut(s)	243, 477, 583
BspCNI	CTCAG	5 cut(s)	61, 393, 576, 622, 700
BspLI	GGNNCC	4 cut(s)	300, 596, 779, 1000
BspOI	GCTAGC	1 cut(s)	234
BspPI	GGATC	1 cut(s)	651
BspT107I	GGYRCC	2 cut(s)	594, 998
BspTNI	GGTCTC	2 cut(s)	611, 887
BsrBI	CCGCTC	1 cut(s)	865
BsrDI	GCAATG	2 cut(s)	772, 886
BsrI	ACTGG	1 cut(s)	897
BssECI	CCNNGG	3 cut(s)	294, 472, 601
BssMI	GATC	3 cut(s)	656, 836, 845
BssT1I	CCWWGG	2 cut(s)	294, 472
Bst2UI	CCWGG	2 cut(s)	661, 677
Bst4CI	ACNGT	4 cut(s)	376, 495, 605, 824
Bst6I	CTCTTC	2 cut(s)	289, 827
BstC8I	GCNNGC	3 cut(s)	232, 405, 558
BstDEI	CTNAG	5 cut(s)	69, 380, 563, 630, 708
BstDSI	CCRYGG	2 cut(s)	294, 601
BstF5I	GGATG	3 cut(s)	148, 810, 873
BstH2I	RGCGCY	2 cut(s)	18, 410
BstHHI	GCGC	3 cut(s)	17, 320, 409
BstKTI	GATC	3 cut(s)	659, 839, 848
BstMAI	GTCTC	4 cut(s)	501, 514, 611, 887
BstMBI	GATC	3 cut(s)	656, 836, 845
BstMWI	GCNNNNNNNGC	5 cut(s)	172, 240, 390, 406, 930
BstNI	CCWGG	2 cut(s)	661, 677
BstSCI	CCNGG	2 cut(s)	659, 675
BstSLI	GKGCMC	1 cut(s)	597
BstV1I	GCAGC	3 cut(s)	239, 317, 387
BstV2I	GAAGAC	1 cut(s)	1029
BstX2I	RGATCY	1 cut(s)	656
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	656
BsuRI	GGCC	3 cut(s)	243, 477, 583
BtgI	CCRYGG	2 cut(s)	294, 601
BtsCI	GGATG	3 cut(s)	148, 810, 873
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	3 cut(s)	232, 405, 558
CfoI	GCGC	3 cut(s)	17, 320, 409
Cfr13I	GGNCC	6 cut(s)	111, 298, 476, 581, 663, 778
Csp6I	GTAC	2 cut(s)	637, 999
CviAII	CATG	4 cut(s)	224, 245, 271, 295
CviQI	GTAC	2 cut(s)	637, 999
DdeI	CTNAG	5 cut(s)	69, 380, 563, 630, 708
DpnI	GATC	3 cut(s)	658, 838, 847
DpnII	GATC	3 cut(s)	656, 836, 845
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	289, 827
EarI	CTCTTC	2 cut(s)	289, 827
EciI	GGCGGA	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	294, 472
Eco24I	GRGCYC	2 cut(s)	75, 491
Eco31I	GGTCTC	2 cut(s)	611, 887
Eco47I	GGWCC	4 cut(s)	111, 298, 663, 778
Eco47III	AGCGCT	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	848
EcoO109I	RGGNCCY	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	659, 675
EcoT14I	CCWWGG	2 cut(s)	294, 472
EcoT38I	GRGCYC	2 cut(s)	75, 491
ErhI	CCWWGG	2 cut(s)	294, 472
Esp3I	CGTCTC	1 cut(s)	514
FaeI	CATG	4 cut(s)	227, 248, 274, 298
FaiI	YATR	5 cut(s)	225, 246, 272, 296, 623
FatI	CATG	4 cut(s)	223, 244, 270, 294
FauI	CCCGC	1 cut(s)	168
Fnu4HI	GCNGC	6 cut(s)	164, 167, 228, 321, 331, 401
FokI	GGATG	3 cut(s)	135, 817, 880
FriOI	GRGCYC	2 cut(s)	75, 491
Fsp4HI	GCNGC	6 cut(s)	164, 167, 228, 321, 331, 401
FspBI	CTAG	2 cut(s)	231, 251
GlaI	GCGC	3 cut(s)	16, 319, 408
GluI	GCNGC	6 cut(s)	164, 167, 228, 321, 331, 401
GsaI	CCCAGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	421
HaeII	RGCGCY	2 cut(s)	18, 410
HaeIII	GGCC	3 cut(s)	243, 477, 583
HapII	CCGG	1 cut(s)	337
HhaI	GCGC	3 cut(s)	17, 320, 409
Hin1II	CATG	4 cut(s)	227, 248, 274, 298
Hin6I	GCGC	3 cut(s)	15, 318, 407
HinP1I	GCGC	3 cut(s)	15, 318, 407
HinfI	GANTC	1 cut(s)	938
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	7 cut(s)	14, 72, 137, 275, 413, 863, 872
Hpy188I	TCNGA	4 cut(s)	88, 589, 828, 841
Hpy188III	TCNNGA	3 cut(s)	217, 251, 1047
HpyAV	CCTTC	1 cut(s)	679
HpyCH4III	ACNGT	4 cut(s)	376, 495, 605, 824
HpyCH4V	TGCA	4 cut(s)	227, 730, 765, 808
HpyF10VI	GCNNNNNNNGC	5 cut(s)	172, 240, 390, 406, 930
HpyF3I	CTNAG	5 cut(s)	69, 380, 563, 630, 708
Hsp92II	CATG	4 cut(s)	227, 248, 274, 298
HspAI	GCGC	3 cut(s)	15, 318, 407
KpnI	GGTACC	1 cut(s)	1002
Kzo9I	GATC	3 cut(s)	656, 836, 845
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	3 cut(s)	239, 317, 387
LweI	GCATC	1 cut(s)	795
MaeI	CTAG	2 cut(s)	231, 251
MaeIII	GTNAC	2 cut(s)	353, 737
MalI	GATC	3 cut(s)	658, 838, 847
MbiI	CCGCTC	1 cut(s)	865
MboI	GATC	3 cut(s)	656, 836, 845
MboII	GAAGA	5 cut(s)	276, 841, 844, 1029, 1032
MflI	RGATCY	1 cut(s)	656
MhlI	GDGCHC	3 cut(s)	75, 491, 597
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	1 cut(s)	697
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	932
MmeI	TCCRAC	2 cut(s)	312, 701
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	1 cut(s)	948
MslI	CAYNNNNRTG	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	243
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	2 cut(s)	661, 677
Mva1269I	GAATGC	1 cut(s)	732
MvaI	CCWGG	2 cut(s)	661, 677
MwoI	GCNNNNNNNGC	5 cut(s)	172, 240, 390, 406, 930
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	3 cut(s)	656, 836, 845
NheI	GCTAGC	1 cut(s)	230
NlaIII	CATG	4 cut(s)	227, 248, 274, 298
NlaIV	GGNNCC	4 cut(s)	300, 596, 779, 1000
NmuCI	GTSAC	2 cut(s)	353, 737
OliI	CACNNNNGTG	1 cut(s)	351
PctI	GAATGC	1 cut(s)	732
PfoI	TCCNGGA	1 cut(s)	659
PkrI	GCNGC	6 cut(s)	165, 168, 229, 322, 332, 402
PleI	GAGTC	1 cut(s)	932
PpsI	GAGTC	1 cut(s)	932
PpuMI	RGGWCCY	1 cut(s)	111
Psp5II	RGGWCCY	1 cut(s)	111
Psp6I	CCWGG	2 cut(s)	659, 675
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	659, 675
PspN4I	GGNNCC	4 cut(s)	300, 596, 779, 1000
PspPI	GGNCC	6 cut(s)	111, 298, 476, 581, 663, 778
PspPPI	RGGWCCY	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	656
RsaI	GTAC	2 cut(s)	638, 1000
RsaNI	GTAC	2 cut(s)	637, 999
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	948
SatI	GCNGC	6 cut(s)	164, 167, 228, 321, 331, 401
Sau3AI	GATC	3 cut(s)	656, 836, 845
Sau96I	GGNCC	6 cut(s)	111, 298, 476, 581, 663, 778
SchI	GAGTC	1 cut(s)	932
ScrFI	CCNGG	2 cut(s)	661, 677
SduI	GDGCHC	3 cut(s)	75, 491, 597
SfaNI	GCATC	1 cut(s)	795
SinI	GGWCC	4 cut(s)	111, 298, 663, 778
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	2 cut(s)	137, 215
SmoI	CTYRAG	2 cut(s)	137, 215
Sse9I	AATT	1 cut(s)	697
SspMI	CTAG	2 cut(s)	231, 251
StyD4I	CCNGG	2 cut(s)	659, 675
StyI	CCWWGG	2 cut(s)	294, 472
TaaI	ACNGT	4 cut(s)	376, 495, 605, 824
TaqI	TCGA	2 cut(s)	467, 936
TasI	AATT	1 cut(s)	697
TauI	GCSGC	3 cut(s)	166, 169, 323
Tru1I	TTAA	1 cut(s)	948
Tru9I	TTAA	1 cut(s)	948
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	2 cut(s)	353, 737
TseI	GCWGC	3 cut(s)	227, 330, 400
Tsp45I	GTSAC	2 cut(s)	353, 737
TspDTI	ATGAA	5 cut(s)	259, 638, 710, 1004, 1032
TspGWI	ACGGA	2 cut(s)	77, 770
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	4 cut(s)	111, 298, 663, 778
XapI	RAATTY	1 cut(s)	697
XbaI	TCTAGA	1 cut(s)	250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	2 cut(s)	231, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.