Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012147

Physical Location & Seq

Genomic Coordinates Forward (+)

24323371 .. 24324335

Gene Structure 965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAGCTCGTTATCAAAACCAAACAGACAATTTTTGTCACCAACAACAAACAACCAAGACACCGGCAGAGAACAAACAATCGCCTGCGCCCGAGATATGGTTGTCTTGTACAACGAGTGCCTTAAAAACCACGCGGTCAGTCTCGGAGGCCACGCTCTTGACGGCTGCGGTGAGTTCACACCAAAGTCAACCACCATCCTCACGGACCCTCCGTCCCTTAGGTGCGATGCTTGTGGCTGCCATCGCAACTTCCACCGTCGTAGTCCTTCTGACGGCTTCAGTCAGCACCGGTCACCACCGTCTCCGTTACAGCTGCAGCCACTCGCCCCTGTTCCGAACTTGCTTCTCTCTCTTAGCTCCGGTTTCTTTGGACCCTCGGATCAAGAAGTCAAGAACAAATTTACGGTGGAAAGGGATGTTAGGAAGACTGCGATGATTAAGAAACATAAGAGGACGAAATTCACGGCGGAGCAGAAGGTGAAGATGAGAGGTTTCGCGGAGAGAGCGGGGTGGAAGATTAACGGCTGGGATGAGAAGTGGGTGAGAGAGTTTTGTAGTGAAGTTGGAATAGAGAGAAAAGTTCTTAAGGTTTGGATCCACAACAATAAGTACTTTAACAACGGGAGGAGCAGAGACACGACGTCCTCTATGTCTTTGAATTTGAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

223

Amino Acids

25.24

Weight (kDa)

9.73

Isoelectric Point (pI)

62.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	35 - 88	1.7e-26	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69600 AT5G60480
fragaria_vesca	FvH4_4g31350
malus_domestica	MD13G1072300.v1.1 MD16G1072800.v1.1
prunus_persica	Prupe.1G274700_v2.0.a1
pyrus_communis	pycom13g06480 pycom16g06310
rosa_chinensis	RchiOBHm_Chr4g0439861
rosa_laevigata	RLG00000006232
rosa_multiflora	Rmu_co8191176.1_g000001 Rmu_sc0006473.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380760
rosa_rugosa	Rorug04G0321800
rosa_samantha	Rh4AG372800 Rh4BG385200 Rh4CG399700 Rh4DG379400
rosa_wichuraiana	Rw4G031870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	644
AccBSI	CCGCTC	1 cut(s)	506
AccII	CGCG	2 cut(s)	134, 497
AciI	CCGC	5 cut(s)	134, 168, 467, 497, 506
AclWI	GGATC	3 cut(s)	387, 589, 602
AcsI	RAATTY	3 cut(s)	398, 458, 658
AcuI	CTGAAG	1 cut(s)	262
AcyI	GRCGYC	1 cut(s)	641
AfaI	GTAC	2 cut(s)	110, 611
AfiI	CCNNNNNNNGG	2 cut(s)	97, 272
AflII	CTTAAG	1 cut(s)	584
AgeI	ACCGGT	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	658, 664
AhdI	GACNNNNNGTC	2 cut(s)	211, 640
AluBI	AGCT	3 cut(s)	6, 313, 357
AluI	AGCT	3 cut(s)	6, 313, 357
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	146, 306, 627
AlwI	GGATC	3 cut(s)	387, 589, 602
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	4 cut(s)	165, 237, 313, 316
ApoI	RAATTY	3 cut(s)	398, 458, 658
AsiGI	ACCGGT	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	205, 371
AsuHPI	GGTGA	5 cut(s)	30, 182, 285, 490, 553
AvaI	CYCGRG	1 cut(s)	90
AvaII	GGWCC	2 cut(s)	205, 371
AxyI	CCTNAGG	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	152, 224, 300, 328
BccI	CCATC	2 cut(s)	203, 249
BceAI	ACGGC	4 cut(s)	178, 289, 480, 538
BcoDI	GTCTC	3 cut(s)	146, 306, 627
BfmI	CTRYAG	1 cut(s)	314
BfrI	CTTAAG	1 cut(s)	584
BisI	GCNGC	4 cut(s)	166, 238, 314, 317
BlsI	GCNGC	4 cut(s)	167, 239, 315, 318
BmcAI	AGTACT	1 cut(s)	611
Bme18I	GGWCC	2 cut(s)	205, 371
BmeRI	GACNNNNNGTC	2 cut(s)	211, 640
BmeT110I	CYCGRG	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	205, 371
BmiI	GGNNCC	3 cut(s)	207, 373, 596
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	641
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	2 cut(s)	288, 359
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 272
Bse118I	RCCGGY	2 cut(s)	62, 288
Bse21I	CCTNAGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	3 cut(s)	195, 421, 535
BseLI	CCNNNNNNNGG	2 cut(s)	97, 272
BseRI	GAGGAG	1 cut(s)	640
BseXI	GCAGC	4 cut(s)	152, 224, 300, 328
BseYI	CCCAGC	1 cut(s)	525
Bsh1236I	CGCG	2 cut(s)	134, 497
BshFI	GGCC	1 cut(s)	150
BshTI	ACCGGT	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	3 cut(s)	63, 289, 360
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	2 cut(s)	97, 272
BsmAI	GTCTC	3 cut(s)	146, 306, 627
BsmBI	CGTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	379, 594
BspACI	CCGC	5 cut(s)	134, 168, 467, 497, 506
BspANI	GGCC	1 cut(s)	150
BspFNI	CGCG	2 cut(s)	134, 497
BspLI	GGNNCC	3 cut(s)	207, 373, 596
BspMAI	CTGCAG	1 cut(s)	318
BspPI	GGATC	3 cut(s)	387, 589, 602
BspTI	CTTAAG	1 cut(s)	584
BsrBI	CCGCTC	1 cut(s)	506
BsrFI	RCCGGY	2 cut(s)	62, 288
BsrGI	TGTACA	1 cut(s)	108
BssAI	RCCGGY	2 cut(s)	62, 288
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	2 cut(s)	379, 594
BssNI	GRCGYC	1 cut(s)	641
Bst4CI	ACNGT	3 cut(s)	257, 300, 406
BstACI	GRCGYC	1 cut(s)	641
BstAFI	CTTAAG	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	2 cut(s)	218, 353
BstEII	GGTNACC	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	195, 421, 535
BstFNI	CGCG	2 cut(s)	134, 497
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	382, 597
BstMAI	GTCTC	3 cut(s)	146, 306, 627
BstMBI	GATC	2 cut(s)	379, 594
BstMWI	GCNNNNNNNGC	2 cut(s)	243, 503
BstPI	GGTNACC	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	314
BstUI	CGCG	2 cut(s)	134, 497
BstV1I	GCAGC	4 cut(s)	152, 224, 300, 328
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	594
BstYI	RGATCY	1 cut(s)	594
Bsu36I	CCTNAGG	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	150
BtgZI	GCGATG	3 cut(s)	227, 240, 446
BtsCI	GGATG	3 cut(s)	195, 421, 535
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	2 cut(s)	62, 288
Cfr13I	GGNCC	2 cut(s)	205, 371
Csp6I	GTAC	2 cut(s)	109, 610
CspAI	ACCGGT	1 cut(s)	288
CviJI	RGCY	9 cut(s)	6, 150, 165, 237, 276, 313, 319, 357, 525
CviKI_1	RGCY	9 cut(s)	6, 150, 165, 237, 276, 313, 319, 357, 525
CviQI	GTAC	2 cut(s)	109, 610
DdeI	CTNAG	2 cut(s)	218, 353
DpnI	GATC	2 cut(s)	381, 596
DpnII	GATC	2 cut(s)	379, 594
DriI	GACNNNNNGTC	2 cut(s)	211, 640
Eam1105I	GACNNNNNGTC	2 cut(s)	211, 640
EciI	GGCGGA	1 cut(s)	482
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	205, 371
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	262
Eco81I	CCTNAGG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	90
Eco91I	GGTNACC	1 cut(s)	291
EcoICRI	GAGCTC	1 cut(s)	6
EcoO65I	GGTNACC	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	8
Esp3I	CGTCTC	1 cut(s)	306
FaiI	YATR	3 cut(s)	98, 447, 650
FaqI	GGGAC	1 cut(s)	199
FauI	CCCGC	1 cut(s)	499
Fnu4HI	GCNGC	4 cut(s)	166, 238, 314, 317
FokI	GGATG	3 cut(s)	182, 428, 542
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	166, 238, 314, 317
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	4 cut(s)	166, 238, 314, 317
GsaI	CCCAGC	1 cut(s)	529
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	3 cut(s)	63, 289, 360
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	641
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HpaII	CCGG	3 cut(s)	63, 289, 360
HphI	GGTGA	5 cut(s)	30, 182, 285, 490, 553
Hpy166II	GTNNAC	2 cut(s)	177, 189
Hpy188I	TCNGA	4 cut(s)	146, 271, 336, 379
Hpy188III	TCNNGA	3 cut(s)	158, 383, 391
Hpy8I	GTNNAC	2 cut(s)	177, 189
Hpy99I	CGWCG	2 cut(s)	261, 643
HpyAV	CCTTC	2 cut(s)	276, 469
HpyCH4III	ACNGT	3 cut(s)	257, 300, 406
HpyCH4IV	ACGT	1 cut(s)	641
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	243, 503
HpyF3I	CTNAG	2 cut(s)	218, 353
HpySE526I	ACGT	1 cut(s)	641
Hsp92I	GRCGYC	1 cut(s)	641
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	379, 594
LmnI	GCTCC	3 cut(s)	362, 469, 627
LpnPI	CCDG	6 cut(s)	76, 97, 302, 342, 373, 511
Lsp1109I	GCAGC	4 cut(s)	152, 224, 300, 328
LweI	GCATC	1 cut(s)	217
MaeII	ACGT	1 cut(s)	641
MaeIII	GTNAC	3 cut(s)	36, 291, 306
MalI	GATC	2 cut(s)	381, 596
MbiI	CCGCTC	1 cut(s)	506
MboI	GATC	2 cut(s)	379, 594
MboII	GAAGA	3 cut(s)	436, 493, 526
MflI	RGATCY	1 cut(s)	594
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	4 cut(s)	29, 398, 458, 658
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	8 cut(s)	140, 209, 219, 385, 444, 482, 618, 655
MseI	TTAA	5 cut(s)	123, 438, 519, 585, 615
MspA1I	CMGCKG	1 cut(s)	313
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	3 cut(s)	63, 289, 360
MvnI	CGCG	2 cut(s)	134, 497
MwoI	GCNNNNNNNGC	2 cut(s)	243, 503
NdeII	GATC	2 cut(s)	379, 594
NlaIV	GGNNCC	3 cut(s)	207, 373, 596
NmuCI	GTSAC	2 cut(s)	36, 291
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PinAI	ACCGGT	1 cut(s)	288
PkrI	GCNGC	4 cut(s)	167, 239, 315, 318
Psp124BI	GAGCTC	1 cut(s)	8
PspEI	GGTNACC	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	525
PspN4I	GGNNCC	3 cut(s)	207, 373, 596
PspPI	GGNCC	2 cut(s)	205, 371
PstI	CTGCAG	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	594
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	2 cut(s)	110, 611
RsaNI	GTAC	2 cut(s)	109, 610
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	5 cut(s)	123, 438, 519, 585, 615
SatI	GCNGC	4 cut(s)	166, 238, 314, 317
Sau3AI	GATC	2 cut(s)	379, 594
Sau96I	GGNCC	2 cut(s)	205, 371
ScaI	AGTACT	1 cut(s)	611
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	8, 224, 315, 359, 480, 493, 591, 644
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	314
SinI	GGWCC	2 cut(s)	205, 371
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	4 cut(s)	29, 398, 458, 658
SsiI	CCGC	5 cut(s)	134, 168, 467, 497, 506
SstI	GAGCTC	1 cut(s)	8
TaaI	ACNGT	3 cut(s)	257, 300, 406
TaiI	ACGT	1 cut(s)	644
TasI	AATT	4 cut(s)	29, 398, 458, 658
TatI	WGTACW	2 cut(s)	108, 609
Tru1I	TTAA	5 cut(s)	123, 438, 519, 585, 615
Tru9I	TTAA	5 cut(s)	123, 438, 519, 585, 615
TseFI	GTSAC	2 cut(s)	36, 291
TseI	GCWGC	4 cut(s)	165, 237, 313, 316
Tsp45I	GTSAC	2 cut(s)	36, 291
TspGWI	ACGGA	3 cut(s)	201, 218, 294
Vha464I	CTTAAG	1 cut(s)	584
VpaK11BI	GGWCC	2 cut(s)	205, 371
XapI	RAATTY	3 cut(s)	398, 458, 658
ZraI	GACGTC	1 cut(s)	642
ZrmI	AGTACT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.