AT1G71120

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016027
Physical Location & Seq
Reverse (-)
26821072 .. 26822487
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71120.1

Sequence Viewer

Length: 1089 bp
ATGTCTTCTTCTTCTTCAATGGACTTACTCATGTGTCTGCTTCTTCTAATCTCTCCGGTTGTTCTGGCCAAGTCTTCTTCCACCGTCCCTGCTATCTTTACCTTCGGTGACTCTATTTTTGACGCCGGAAACAACCATTACAACAAAAACTGTACCGCTCAGGCTGATTTTCCTCCTTATGGTTCTTCCTTTTTCCACCGTCCTACTGGGAGGTTCACCAACGGAAGAACCGTCGCTGACTTCATCTCGGAATTTGTAGGCCTTCCATTACAGAAACCATTCTTGGAATTGCAGATTCAAATCTTGAATGGAACTTCAAACTTTTCAAATGGCATTAACTTTGCTAGTGCTGGTAGTGGTCTCTTGCTTGATACCAACAAATTTATGGGCGTGACACCGATCCAAACCCAGCTACAGCAATTCCAGACACTTGTAGAGCAAAACCTTATCGAAAAATCTATAATCCAAGAGTCTCTCTTCTTATTAGAAACTGGTTCTAACGACATCTTCAACTACTTCCTCCCATTCCGAGCTCCTACACTTTCTCCAGACGCTTATGTGAACGCAATGTTAGACCAAGTGAACAAAACGATTGATCAGATCTACAAACTAGGCGCACGCCGCATCGCTTTCTTCTCCTTAGGTCCTGTAGGTTGTGTCCCTGCAAGAGCCATGCTTCCTAATGCCCCAACCAATAAATGCTTTGGTAAGATGAATGTTATGGCCAAGATGTATAATAAAAGACTTGAAGATATAGTGAACATAATCCCCACTAAGTACCCTGGAGCCATTGCGGTGTTTGGAGCTGTATATGGTATCACTCACAGATTTCAAACCTACCCTGCCCGTTACGGGTTTTCGGATGTTTCAAACGCGTGTTGTGGGAACGGTACACTGGGAGGATTGATGCAGTGTGGAAGAGAAGGATACAAGATTTGCAATAACCCAAATGAGTTTCTGTTTTGGGATTTTTATCATCCCACAGAACACACTTACCGTCTCATGTCAAAAGCTTTATGGAATGGAAACAAAAACCATATCAGACCATTTAATCTCATGGCTCTTGCCACCAACAAGATCACATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

362

Amino Acids

40.22

Weight (kDa)

8.82

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 32 - 339 2.8e-36 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71120
prunus_persica Prupe.1G321500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0433751 RchiOBHm_Chr4g0433761
rosa_laevigata RLG00000006733
rosa_multiflora Rmu_sc0006151.1_g000003
rosa_roxburghii Rroxscaffold_5G00375190
rosa_rugosa Rorug04G0271300
rosa_samantha Rh4AG325800 Rh4AG325900 Rh4BG333600 Rh4CG348800 Rh4DG330200 Rh4DG330300
rosa_wichuraiana Rw4G028220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 158
AccII CGCG 1 cut(s) 875
AciI CCGC 3 cut(s) 156, 622, 794
AclWI GGATC 1 cut(s) 394
AcoI YGGCCR 2 cut(s) 66, 723
AcsI RAATTY 2 cut(s) 251, 380
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 3 cut(s) 154, 779, 892
AfiI CCNNNNNNNGG 2 cut(s) 179, 852
AflIII ACRYGT 1 cut(s) 873
AgsI TTSAA 9 cut(s) 18, 299, 307, 318, 327, 511, 749, 833, 870
AjnI CCWGG 1 cut(s) 781
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 4 cut(s) 412, 533, 806, 1013
AluI AGCT 4 cut(s) 412, 533, 806, 1013
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 3 cut(s) 365, 477, 1004
AlwI GGATC 1 cut(s) 394
AoxI GGCC 3 cut(s) 66, 259, 723
ApoI RAATTY 2 cut(s) 251, 380
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
Asp700I GAANNNNTTC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 617
AspS9I GGNCC 1 cut(s) 644
AsuHPI GGTGA 2 cut(s) 119, 208
AvaII GGWCC 1 cut(s) 644
AxyI CCTNAGG 1 cut(s) 640
BalI TGGCCA 2 cut(s) 68, 725
BanII GRGCYC 1 cut(s) 535
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 535
BciT130I CCWGG 1 cut(s) 783
BciVI GTATCC 1 cut(s) 920
BclI TGATCA 1 cut(s) 595
BcoDI GTCTC 3 cut(s) 365, 477, 1004
BfaI CTAG 2 cut(s) 345, 611
BfmI CTRYAG 2 cut(s) 413, 648
BfuI GTATCC 1 cut(s) 920
BglII AGATCT 1 cut(s) 600
BisI GCNGC 1 cut(s) 622
BlsI GCNGC 1 cut(s) 623
Bme1390I CCNGG 1 cut(s) 783
Bme18I GGWCC 1 cut(s) 644
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 1 cut(s) 787
BmrFI CCNGG 1 cut(s) 783
BmrI ACTGGG 2 cut(s) 216, 905
BmsI GCATC 2 cut(s) 633, 897
BmuI ACTGGG 2 cut(s) 216, 905
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 2 cut(s) 531, 804
Bpu10I CCTNAGC 1 cut(s) 159
BsaBI GATNNNNATC 2 cut(s) 299, 972
BsaHI GRCGYC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 781
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 852
Bse1I ACTGG 3 cut(s) 211, 496, 900
Bse21I CCTNAGG 1 cut(s) 640
Bse3DI GCAATG 2 cut(s) 573, 789
Bse8I GATNNNNATC 2 cut(s) 299, 972
BseBI CCWGG 1 cut(s) 783
BseDI CCNNGG 1 cut(s) 781
BseGI GGATG 2 cut(s) 868, 976
BseJI GATNNNNATC 2 cut(s) 299, 972
BseLI CCNNNNNNNGG 2 cut(s) 179, 852
BseMI GCAATG 2 cut(s) 573, 789
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 3 cut(s) 211, 496, 900
BseYI CCCAGC 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 875
BshFI GGCC 3 cut(s) 68, 261, 725
BsiHKAI GWGCWC 1 cut(s) 535
BsiSI CCGG 2 cut(s) 56, 126
BslFI GGGAC 2 cut(s) 71, 644
BslI CCNNNNNNNGG 2 cut(s) 179, 852
BsmAI GTCTC 3 cut(s) 365, 477, 1004
BsmBI CGTCTC 1 cut(s) 1004
BsmFI GGGAC 2 cut(s) 71, 644
BsnI GGCC 3 cut(s) 68, 261, 725
Bso31I GGTCTC 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 4 cut(s) 399, 595, 600, 1077
BspACI CCGC 3 cut(s) 156, 622, 794
BspANI GGCC 3 cut(s) 68, 261, 725
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 1 cut(s) 875
BspLI GGNNCC 1 cut(s) 787
BspPI GGATC 1 cut(s) 394
BspTNI GGTCTC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 573, 789
BsrI ACTGG 3 cut(s) 211, 496, 900
BssECI CCNNGG 1 cut(s) 781
BssMI GATC 4 cut(s) 399, 595, 600, 1077
BssNI GRCGYC 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 783
Bst4CI ACNGT 6 cut(s) 85, 152, 200, 232, 890, 998
Bst6I CTCTTC 2 cut(s) 482, 913
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 3 cut(s) 159, 640, 774
BstF5I GGATG 2 cut(s) 868, 976
BstFNI CGCG 1 cut(s) 875
BstHHI GCGC 1 cut(s) 617
BstKTI GATC 4 cut(s) 402, 598, 603, 1080
BstMAI GTCTC 3 cut(s) 365, 477, 1004
BstMBI GATC 4 cut(s) 399, 595, 600, 1077
BstMWI GCNNNNNNNGC 1 cut(s) 621
BstNI CCWGG 1 cut(s) 783
BstSCI CCNGG 1 cut(s) 781
BstSFI CTRYAG 2 cut(s) 413, 648
BstUI CGCG 1 cut(s) 875
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 600
BstYI RGATCY 1 cut(s) 600
Bsu36I CCTNAGG 1 cut(s) 640
BsuI GTATCC 1 cut(s) 920
BsuRI GGCC 3 cut(s) 68, 261, 725
BtgZI GCGATG 1 cut(s) 610
BtsCI GGATG 2 cut(s) 868, 976
BtsI GCAGTG 1 cut(s) 917
BtsIMutI CAGTG 2 cut(s) 893, 917
Cac8I GCNNGC 1 cut(s) 619
CfoI GCGC 1 cut(s) 617
Cfr13I GGNCC 1 cut(s) 644
CseI GACGC 2 cut(s) 131, 560
Csp6I GTAC 3 cut(s) 153, 778, 891
CviAII CATG 4 cut(s) 31, 673, 1003, 1057
CviQI GTAC 3 cut(s) 153, 778, 891
DdeI CTNAG 3 cut(s) 159, 640, 774
DpnI GATC 4 cut(s) 401, 597, 602, 1079
DpnII GATC 4 cut(s) 399, 595, 600, 1077
EaeI YGGCCR 2 cut(s) 66, 723
Eam1104I CTCTTC 2 cut(s) 482, 913
EarI CTCTTC 2 cut(s) 482, 913
Ecl136II GAGCTC 1 cut(s) 533
Eco147I AGGCCT 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 535
Eco31I GGTCTC 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 644
Eco53kI GAGCTC 1 cut(s) 533
Eco81I CCTNAGG 1 cut(s) 640
EcoICRI GAGCTC 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 644
EcoRII CCWGG 1 cut(s) 781
EcoT38I GRGCYC 1 cut(s) 535
Esp3I CGTCTC 1 cut(s) 1004
FaeI CATG 4 cut(s) 34, 676, 1006, 1060
FaqI GGGAC 2 cut(s) 71, 644
FatI CATG 4 cut(s) 30, 672, 1002, 1056
FbaI TGATCA 1 cut(s) 595
Fnu4HI GCNGC 1 cut(s) 622
FokI GGATG 2 cut(s) 875, 963
FriOI GRGCYC 1 cut(s) 535
Fsp4HI GCNGC 1 cut(s) 622
FspBI CTAG 2 cut(s) 345, 611
GlaI GCGC 1 cut(s) 616
GluI GCNGC 1 cut(s) 622
GsaI CCCAGC 1 cut(s) 412
GsuI CTGGAG 2 cut(s) 531, 804
HaeIII GGCC 3 cut(s) 68, 261, 725
HapII CCGG 2 cut(s) 56, 126
HgaI GACGC 2 cut(s) 131, 560
HhaI GCGC 1 cut(s) 617
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 4 cut(s) 34, 676, 1006, 1060
Hin6I GCGC 1 cut(s) 615
HinP1I GCGC 1 cut(s) 615
HindIII AAGCTT 1 cut(s) 1011
HinfI GANTC 3 cut(s) 110, 295, 470
HpaII CCGG 2 cut(s) 56, 126
HphI GGTGA 2 cut(s) 119, 208
Hpy166II GTNNAC 5 cut(s) 216, 562, 583, 760, 893
Hpy188I TCNGA 5 cut(s) 250, 530, 600, 862, 1043
Hpy188III TCNNGA 3 cut(s) 304, 424, 548
Hpy8I GTNNAC 5 cut(s) 216, 562, 583, 760, 893
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 3 cut(s) 112, 272, 917
HpyCH4III ACNGT 6 cut(s) 85, 152, 200, 232, 890, 998
HpyCH4V TGCA 4 cut(s) 292, 665, 910, 939
HpyF10VI GCNNNNNNNGC 1 cut(s) 621
HpyF3I CTNAG 3 cut(s) 159, 640, 774
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 4 cut(s) 34, 676, 1006, 1060
HspAI GCGC 1 cut(s) 615
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 4 cut(s) 399, 595, 600, 1077
LmnI GCTCC 3 cut(s) 538, 785, 803
LweI GCATC 2 cut(s) 633, 897
MaeI CTAG 2 cut(s) 345, 611
MaeIII GTNAC 3 cut(s) 107, 391, 848
MalI GATC 4 cut(s) 401, 597, 602, 1079
MbiI CCGCTC 1 cut(s) 158
MboI GATC 4 cut(s) 399, 595, 600, 1077
MflI RGATCY 1 cut(s) 600
MhlI GDGCHC 1 cut(s) 535
MlsI TGGCCA 2 cut(s) 68, 725
MluCI AATT 4 cut(s) 251, 287, 380, 419
MluI ACGCGT 1 cut(s) 873
MluNI TGGCCA 2 cut(s) 68, 725
MlyI GAGTC 2 cut(s) 104, 479
MnlI CCTC 4 cut(s) 183, 204, 530, 893
Mox20I TGGCCA 2 cut(s) 68, 725
MroXI GAANNNNTTC 1 cut(s) 278
MscI TGGCCA 2 cut(s) 68, 725
MseI TTAA 3 cut(s) 336, 1050, 1087
MslI CAYNNNNRTG 1 cut(s) 794
Msp20I TGGCCA 2 cut(s) 68, 725
MspI CCGG 2 cut(s) 56, 126
MspR9I CCNGG 1 cut(s) 783
MvaI CCWGG 1 cut(s) 783
MvnI CGCG 1 cut(s) 875
MwoI GCNNNNNNNGC 1 cut(s) 621
NdeII GATC 4 cut(s) 399, 595, 600, 1077
NlaIII CATG 4 cut(s) 34, 676, 1006, 1060
NlaIV GGNNCC 1 cut(s) 787
NmuCI GTSAC 2 cut(s) 107, 391
PceI AGGCCT 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 1 cut(s) 623
PleI GAGTC 2 cut(s) 104, 478
PpsI GAGTC 2 cut(s) 104, 478
PpuMI RGGWCCY 1 cut(s) 644
Psp124BI GAGCTC 1 cut(s) 535
Psp5II RGGWCCY 1 cut(s) 644
Psp6I CCWGG 1 cut(s) 781
PspFI CCCAGC 1 cut(s) 408
PspGI CCWGG 1 cut(s) 781
PspN4I GGNNCC 1 cut(s) 787
PspPI GGNCC 1 cut(s) 644
PspPPI RGGWCCY 1 cut(s) 644
PsuI RGATCY 1 cut(s) 600
RsaI GTAC 3 cut(s) 154, 779, 892
RsaNI GTAC 3 cut(s) 153, 778, 891
RseI CAYNNNNRTG 1 cut(s) 794
SacI GAGCTC 1 cut(s) 535
SaqAI TTAA 3 cut(s) 336, 1050, 1087
SatI GCNGC 1 cut(s) 622
Sau3AI GATC 4 cut(s) 399, 595, 600, 1077
Sau96I GGNCC 1 cut(s) 644
SchI GAGTC 2 cut(s) 104, 479
ScrFI CCNGG 1 cut(s) 783
SduI GDGCHC 1 cut(s) 535
SfaNI GCATC 2 cut(s) 633, 897
SfcI CTRYAG 2 cut(s) 413, 648
SinI GGWCC 1 cut(s) 644
SmiMI CAYNNNNRTG 1 cut(s) 794
Sse9I AATT 4 cut(s) 251, 287, 380, 419
SseBI AGGCCT 1 cut(s) 261
SsiI CCGC 3 cut(s) 156, 622, 794
SspMI CTAG 2 cut(s) 345, 611
SstI GAGCTC 1 cut(s) 535
StuI AGGCCT 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 781
TaaI ACNGT 6 cut(s) 85, 152, 200, 232, 890, 998
TaqI TCGA 1 cut(s) 450
TasI AATT 4 cut(s) 251, 287, 380, 419
TauI GCSGC 1 cut(s) 624
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 3 cut(s) 336, 1050, 1087
Tru9I TTAA 3 cut(s) 336, 1050, 1087
TscAI CASTG 2 cut(s) 900, 917
TseFI GTSAC 2 cut(s) 107, 391
Tsp45I GTSAC 2 cut(s) 107, 391
TspDTI ATGAA 2 cut(s) 232, 728
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 2 cut(s) 900, 917
VpaK11BI GGWCC 1 cut(s) 644
XapI RAATTY 2 cut(s) 251, 380
XcmI CCANNNNNNNNNTGG 2 cut(s) 203, 382
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 2 cut(s) 345, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.