Rh4CG348800

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0016027
Physical Location & Seq
Reverse (-)
60657605 .. 60659674
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG348800.1

Sequence Viewer

Length: 1101 bp
ATGATGAAAACCACACTACTACTACTTCTCCTTCTTGTATGTTCTTCATCTGTTTCATCATCAGATTCATCTCTAATATCCACTGCTGTTTGTGGGATCTTCACTTTCGGAGACTCCATCTTCGACGCTGGAAACAATCACTTCAACAAGAACTGCACTGTTCAAGCAGATTTCCCACCGTATGGCTCAAGCTTCTTCCACTACCCGACTGGCAGGTTCACTAATGGCAGAACTGTTGCTGATTTCATCTCACAATTCATCGGCATTCCTCTCCAAAAACCATATTATGAGGTACAAATTGAAGCTATGACTGGAAGCCGGAAAGGTTATCCTTCCAATGGCATTAACTTTGCTAGTGCCGGCAGCGGTGTTTTGCAAGGAACAAATAAAAATTTGGGAGTCACCTCACTCCAAGAACAATTACAACAATTCCAGACACTAGTGGAGCAAAACCACATTGGCAAAACTCTAGTTCAGAAATCCTTCTTCTTCTTCGAGTCTGGTTCCAACGACATCTTCAACTACTTTCTTCCATTTGCTCCCCCAACACTAGACCCGGATGCCTATGTCCAAGCCATGCTAACCCAAGTCACAAAATTCATAGACCAAATCTACATGCTTGGCACTCGCCGAATTGCTTTGTTTTCACTAGGGCCTGTTGGCTGTGCTCCAGCCAGGGCACTCCTGCCAGGTGCACCCATTAATCGATGTTTCGGAAAGATGAACTTGATGGTTAAGAAGTACAACAAGGGACTGGAATGTTTGGTCAATGATATGCCTATCAAGTACCCCGGGGTGGTGGGTGTTTATGGAGAAACCTATGACATTGTTCAGCGATTTCGAGCCATTCCTACACGTTACCATTTTTCAGACGTATCGAGTGCATGTTGCGGCGGAGGTACTCTAGGAGGATTGCTGCAATGTGGGAAGGAGGGATACAAGACATGTGCAAACCCTAATGAGTTCTTATTCTGGGATTACTTCCATCCATCAGAGCATGCTTACAGGCTCATATCCAAGGCCTTGTGGGGTGGAAAGAAATATCGAATTAGACCACTTAATTTGAAGGCTCTAGCCAACATCACCCTCACTCGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

366

Amino Acids

40.45

Weight (kDa)

9.06

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 33 - 342 2.3e-32 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71120
prunus_persica Prupe.1G321500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0433751 RchiOBHm_Chr4g0433761
rosa_laevigata RLG00000006733
rosa_multiflora Rmu_sc0006151.1_g000003
rosa_roxburghii Rroxscaffold_5G00375190
rosa_rugosa Rorug04G0271300
rosa_samantha Rh4AG325800 Rh4AG325900 Rh4BG333600 Rh4CG348800 Rh4DG330200 Rh4DG330300
rosa_wichuraiana Rw4G028220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 204
AccB7I CCANNNNNTGG 1 cut(s) 182
AciI CCGC 3 cut(s) 366, 891, 894
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 2 cut(s) 391, 596
AfaI GTAC 4 cut(s) 294, 743, 788, 901
AfiI CCNNNNNNNGG 3 cut(s) 182, 338, 796
AflIII ACRYGT 2 cut(s) 854, 944
AgsI TTSAA 5 cut(s) 145, 164, 302, 520, 1066
AhlI ACTAGT 1 cut(s) 439
AjnI CCWGG 2 cut(s) 674, 688
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AluBI AGCT 2 cut(s) 192, 305
AluI AGCT 2 cut(s) 192, 305
Alw21I GWGCWC 2 cut(s) 670, 697
Alw26I GTCTC 1 cut(s) 105
Alw44I GTGCAC 1 cut(s) 693
AlwI GGATC 1 cut(s) 104
Ama87I CYCGRG 1 cut(s) 791
AoxI GGCC 2 cut(s) 653, 1020
ApaLI GTGCAC 1 cut(s) 693
ApeKI GCWGC 2 cut(s) 363, 916
ApoI RAATTY 2 cut(s) 391, 596
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AseI ATTAAT 1 cut(s) 702
Asp700I GAANNNNTTC 1 cut(s) 482
AspS9I GGNCC 1 cut(s) 653
AsuC2I CCSGG 3 cut(s) 557, 792, 793
AsuHPI GGTGA 2 cut(s) 394, 1075
AvaI CYCGRG 1 cut(s) 791
BaeGI GKGCMC 2 cut(s) 682, 697
BarI GAAGNNNNNNTAC 2 cut(s) 920, 952
BauI CACGAG 1 cut(s) 1092
Bbv12I GWGCWC 2 cut(s) 670, 697
BbvI GCAGC 2 cut(s) 375, 903
BccI CCATC 4 cut(s) 125, 724, 993, 997
BciT130I CCWGG 2 cut(s) 676, 690
BciVI GTATCC 1 cut(s) 929
BcnI CCSGG 3 cut(s) 557, 792, 793
BcoDI GTCTC 1 cut(s) 105
BcuI ACTAGT 1 cut(s) 439
BfaI CTAG 7 cut(s) 354, 440, 470, 551, 650, 905, 1073
BfuAI ACCTGC 1 cut(s) 204
BfuI GTATCC 1 cut(s) 929
BisI GCNGC 3 cut(s) 364, 892, 917
BlsI GCNGC 3 cut(s) 365, 893, 918
Bme1390I CCNGG 5 cut(s) 557, 676, 690, 792, 793
BmeT110I CYCGRG 1 cut(s) 791
BmgT120I GGNCC 1 cut(s) 653
BmiI GGNNCC 1 cut(s) 505
BmrFI CCNGG 5 cut(s) 557, 676, 690, 792, 793
BmsI GCATC 1 cut(s) 550
BpmI CTGGAG 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 172
BpuMI CCSGG 3 cut(s) 557, 792, 793
Bsa29I ATCGAT 1 cut(s) 706
BsaJI CCNNGG 5 cut(s) 675, 790, 791, 792, 1017
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 338, 796
Bse118I RCCGGY 1 cut(s) 359
Bse1I ACTGG 3 cut(s) 214, 316, 759
Bse3DI GCAATG 1 cut(s) 926
BseBI CCWGG 2 cut(s) 676, 690
BseCI ATCGAT 1 cut(s) 706
BseDI CCNNGG 5 cut(s) 675, 790, 791, 792, 1017
BseGI GGATG 2 cut(s) 565, 985
BseLI CCNNNNNNNGG 3 cut(s) 182, 338, 796
BseMI GCAATG 1 cut(s) 926
BseNI ACTGG 3 cut(s) 214, 316, 759
BseSI GKGCMC 2 cut(s) 682, 697
BseXI GCAGC 2 cut(s) 375, 903
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 2 cut(s) 655, 1022
BshVI ATCGAT 1 cut(s) 706
BsiHKAI GWGCWC 2 cut(s) 670, 697
BsiHKCI CYCGRG 1 cut(s) 791
BsiSI CCGG 4 cut(s) 319, 360, 557, 792
BslFI GGGAC 1 cut(s) 765
BslI CCNNNNNNNGG 3 cut(s) 182, 338, 796
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 765
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 2 cut(s) 655, 1022
BsoBI CYCGRG 1 cut(s) 791
Bsp1286I GDGCHC 3 cut(s) 670, 682, 697
Bsp143I GATC 1 cut(s) 96
BspACI CCGC 3 cut(s) 366, 891, 894
BspANI GGCC 2 cut(s) 655, 1022
BspDI ATCGAT 1 cut(s) 706
BspLI GGNNCC 1 cut(s) 505
BspMI ACCTGC 1 cut(s) 204
BspPI GGATC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 926
BsrFI RCCGGY 1 cut(s) 359
BsrI ACTGG 3 cut(s) 214, 316, 759
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 5 cut(s) 675, 790, 791, 792, 1017
BssMI GATC 1 cut(s) 96
BssSI CACGAG 1 cut(s) 1092
BssT1I CCWWGG 1 cut(s) 1017
Bst2BI CACGAG 1 cut(s) 1092
Bst2UI CCWGG 2 cut(s) 676, 690
Bst4CI ACNGT 3 cut(s) 160, 180, 235
BstC8I GCNNGC 2 cut(s) 361, 999
BstF5I GGATG 2 cut(s) 565, 985
BstKTI GATC 1 cut(s) 99
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 96
BstNI CCWGG 2 cut(s) 676, 690
BstNSI RCATGY 4 cut(s) 619, 888, 948, 1001
BstSCI CCNGG 5 cut(s) 555, 674, 688, 790, 791
BstSLI GKGCMC 2 cut(s) 682, 697
BstV1I GCAGC 2 cut(s) 375, 903
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 706
BsuI GTATCC 1 cut(s) 929
BsuRI GGCC 2 cut(s) 655, 1022
BsuTUI ATCGAT 1 cut(s) 706
BtsCI GGATG 2 cut(s) 565, 985
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 2 cut(s) 81, 156
BveI ACCTGC 1 cut(s) 204
Cac8I GCNNGC 2 cut(s) 361, 999
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 1 cut(s) 653
Cfr9I CCCGGG 1 cut(s) 791
ClaI ATCGAT 1 cut(s) 706
CseI GACGC 1 cut(s) 134
Csp6I GTAC 4 cut(s) 293, 742, 787, 900
CspCI CAANNNNNGTGG 2 cut(s) 1044, 1079
CviAII CATG 5 cut(s) 577, 616, 885, 945, 998
CviQI GTAC 4 cut(s) 293, 742, 787, 900
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
EciI GGCGGA 1 cut(s) 909
Eco130I CCWWGG 1 cut(s) 1017
Eco147I AGGCCT 1 cut(s) 1022
Eco88I CYCGRG 1 cut(s) 791
EcoO109I RGGNCCY 1 cut(s) 653
EcoRII CCWGG 2 cut(s) 674, 688
EcoT14I CCWWGG 1 cut(s) 1017
ErhI CCWWGG 1 cut(s) 1017
FaeI CATG 5 cut(s) 580, 619, 888, 948, 1001
FalI AAGNNNNNCTT 2 cut(s) 710, 742
FaqI GGGAC 1 cut(s) 765
FatI CATG 5 cut(s) 576, 615, 884, 944, 997
Fnu4HI GCNGC 3 cut(s) 364, 892, 917
FokI GGATG 2 cut(s) 572, 972
Fsp4HI GCNGC 3 cut(s) 364, 892, 917
FspBI CTAG 7 cut(s) 354, 440, 470, 551, 650, 905, 1073
GluI GCNGC 3 cut(s) 364, 892, 917
GsuI CTGGAG 1 cut(s) 654
HaeIII GGCC 2 cut(s) 655, 1022
HapII CCGG 4 cut(s) 319, 360, 557, 792
HgaI GACGC 1 cut(s) 134
Hin1II CATG 5 cut(s) 580, 619, 888, 948, 1001
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 4 cut(s) 65, 113, 399, 497
HpaII CCGG 4 cut(s) 319, 360, 557, 792
HphI GGTGA 2 cut(s) 394, 1075
Hpy166II GTNNAC 2 cut(s) 219, 695
Hpy188I TCNGA 6 cut(s) 64, 110, 477, 716, 871, 994
Hpy188III TCNNGA 1 cut(s) 433
Hpy8I GTNNAC 2 cut(s) 219, 695
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 5 cut(s) 41, 342, 493, 922, 1060
HpyCH4III ACNGT 3 cut(s) 160, 180, 235
HpyCH4IV ACGT 2 cut(s) 856, 873
HpyCH4V TGCA 6 cut(s) 156, 376, 695, 884, 919, 950
HpySE526I ACGT 2 cut(s) 856, 873
Hsp92II CATG 5 cut(s) 580, 619, 888, 948, 1001
KroI GCCGGC 1 cut(s) 359
KroNI GCCGGC 1 cut(s) 361
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 3 cut(s) 445, 544, 673
Lsp1109I GCAGC 2 cut(s) 375, 903
LweI GCATC 1 cut(s) 550
MaeI CTAG 7 cut(s) 354, 440, 470, 551, 650, 905, 1073
MaeII ACGT 2 cut(s) 856, 873
MaeIII GTNAC 3 cut(s) 400, 589, 857
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 9 cut(s) 36, 91, 112, 187, 478, 481, 484, 508, 521
MflI RGATCY 1 cut(s) 96
MhlI GDGCHC 3 cut(s) 670, 682, 697
MluCI AATT 9 cut(s) 254, 297, 391, 419, 428, 596, 633, 1047, 1060
MlyI GAGTC 3 cut(s) 107, 408, 506
MmeI TCCRAC 1 cut(s) 531
MnlI CCTC 7 cut(s) 279, 283, 415, 890, 902, 925, 1097
MroNI GCCGGC 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 482
MseI TTAA 4 cut(s) 345, 702, 735, 1059
MspA1I CMGCKG 1 cut(s) 366
MspI CCGG 4 cut(s) 319, 360, 557, 792
MspR9I CCNGG 5 cut(s) 557, 676, 690, 792, 793
Mva1269I GAATGC 1 cut(s) 264
MvaI CCWGG 2 cut(s) 676, 690
NaeI GCCGGC 1 cut(s) 361
NciI CCSGG 3 cut(s) 557, 792, 793
NdeII GATC 1 cut(s) 96
NgoMIV GCCGGC 1 cut(s) 359
NlaIII CATG 5 cut(s) 580, 619, 888, 948, 1001
NlaIV GGNNCC 1 cut(s) 505
NmuCI GTSAC 2 cut(s) 400, 589
NspI RCATGY 4 cut(s) 619, 888, 948, 1001
PaeI GCATGC 1 cut(s) 1001
PceI AGGCCT 1 cut(s) 1022
PciI ACATGT 1 cut(s) 944
PctI GAATGC 1 cut(s) 264
PdiI GCCGGC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 482
PfeI GAWTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 3 cut(s) 365, 893, 918
PleI GAGTC 3 cut(s) 107, 407, 505
PpsI GAGTC 3 cut(s) 107, 407, 505
PscI ACATGT 1 cut(s) 944
PshBI ATTAAT 1 cut(s) 702
Psp6I CCWGG 2 cut(s) 674, 688
PspGI CCWGG 2 cut(s) 674, 688
PspN4I GGNNCC 1 cut(s) 505
PspPI GGNCC 1 cut(s) 653
PsuI RGATCY 1 cut(s) 96
RsaI GTAC 4 cut(s) 294, 743, 788, 901
RsaNI GTAC 4 cut(s) 293, 742, 787, 900
SaqAI TTAA 4 cut(s) 345, 702, 735, 1059
SatI GCNGC 3 cut(s) 364, 892, 917
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 653
SchI GAGTC 3 cut(s) 107, 408, 506
ScrFI CCNGG 5 cut(s) 557, 676, 690, 792, 793
SduI GDGCHC 3 cut(s) 670, 682, 697
SfaNI GCATC 1 cut(s) 550
SmaI CCCGGG 1 cut(s) 793
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
SpeI ACTAGT 1 cut(s) 439
SphI GCATGC 1 cut(s) 1001
Sse9I AATT 9 cut(s) 254, 297, 391, 419, 428, 596, 633, 1047, 1060
SseBI AGGCCT 1 cut(s) 1022
SsiI CCGC 3 cut(s) 366, 891, 894
SspMI CTAG 7 cut(s) 354, 440, 470, 551, 650, 905, 1073
StuI AGGCCT 1 cut(s) 1022
StyD4I CCNGG 5 cut(s) 555, 674, 688, 790, 791
StyI CCWWGG 1 cut(s) 1017
TaaI ACNGT 3 cut(s) 160, 180, 235
TaiI ACGT 2 cut(s) 859, 876
TaqI TCGA 6 cut(s) 123, 495, 706, 841, 878, 1045
TasI AATT 9 cut(s) 254, 297, 391, 419, 428, 596, 633, 1047, 1060
TatI WGTACW 1 cut(s) 741
TauI GCSGC 1 cut(s) 894
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 4 cut(s) 345, 702, 735, 1059
Tru9I TTAA 4 cut(s) 345, 702, 735, 1059
TscAI CASTG 2 cut(s) 88, 163
TseFI GTSAC 2 cut(s) 400, 589
TseI GCWGC 2 cut(s) 363, 916
Tsp45I GTSAC 2 cut(s) 400, 589
TspDTI ATGAA 8 cut(s) 20, 36, 45, 57, 235, 247, 589, 737
TspMI CCCGGG 1 cut(s) 791
TspRI CASTG 2 cut(s) 88, 163
Van91I CCANNNNNTGG 1 cut(s) 182
VneI GTGCAC 1 cut(s) 693
VspI ATTAAT 1 cut(s) 702
XapI RAATTY 2 cut(s) 391, 596
XceI RCATGY 4 cut(s) 619, 888, 948, 1001
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XmaI CCCGGG 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 482
XspI CTAG 7 cut(s) 354, 440, 470, 551, 650, 905, 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.