Rh4AG325800

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
63736692 .. 63737186
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG325800.1

Sequence Viewer

Length: 309 bp
ATGCCTATCAAGTACCCCGGGGTGGTGGGTGTTTATGGAGAAACCTATGACATTGTTCAGCGATTTCGAGCCATTCCTATACGTTACCATTTTTCGGACGTATCGAGCGCATGTTGCGGCGGAGGTACTATAGGAGGATTGCTGCAATGTGGGAAGGAGGGATACAAGACGTGTGCAAACCCTAATGAGTTCTTATTCTGGGATTACTTCCATCCATCAGAGCATGCTTACAGGCTCATATCCAAGGCCTTGTGGGGTGGAAAGAAATATCGAATTAGACCACTTAATTTGAAGGCTCTAGCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.48

Weight (kDa)

9.28

Isoelectric Point (pI)

23.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016027)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 117, 120
AfaI GTAC 2 cut(s) 14, 127
AfiI CCNNNNNNNGG 2 cut(s) 22, 94
AflIII ACRYGT 1 cut(s) 170
AgsI TTSAA 1 cut(s) 292
AjiI CACGTC 1 cut(s) 171
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 142
AspLEI GCGC 1 cut(s) 110
AsuC2I CCSGG 2 cut(s) 18, 19
AvaI CYCGRG 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BbvI GCAGC 1 cut(s) 129
BccI CCATC 2 cut(s) 219, 223
BciVI GTATCC 1 cut(s) 155
BcnI CCSGG 2 cut(s) 18, 19
BfaI CTAG 2 cut(s) 299, 307
BfmI CTRYAG 1 cut(s) 129
BfuI GTATCC 1 cut(s) 155
BisI GCNGC 2 cut(s) 118, 143
BlsI GCNGC 2 cut(s) 119, 144
Bme1390I CCNGG 2 cut(s) 18, 19
BmeT110I CYCGRG 1 cut(s) 17
BmgBI CACGTC 1 cut(s) 171
BmrFI CCNGG 2 cut(s) 18, 19
BpuMI CCSGG 2 cut(s) 18, 19
BsaJI CCNNGG 4 cut(s) 16, 17, 18, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 94
Bse3DI GCAATG 1 cut(s) 152
BseDI CCNNGG 4 cut(s) 16, 17, 18, 243
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 22, 94
BseMI GCAATG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 1 cut(s) 248
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 22, 94
BsnI GGCC 1 cut(s) 248
BsoBI CYCGRG 1 cut(s) 17
BspACI CCGC 2 cut(s) 117, 120
BspANI GGCC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 152
BssECI CCNNGG 4 cut(s) 16, 17, 18, 243
BssT1I CCWWGG 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 225
BstF5I GGATG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 110
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNSI RCATGY 2 cut(s) 114, 227
BstSCI CCNGG 2 cut(s) 16, 17
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 129
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 1 cut(s) 248
BtrI CACGTC 1 cut(s) 171
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 110
Cfr9I CCCGGG 1 cut(s) 17
Csp6I GTAC 2 cut(s) 13, 126
CspCI CAANNNNNGTGG 2 cut(s) 270, 305
CviAII CATG 2 cut(s) 111, 224
CviJI RGCY 4 cut(s) 71, 235, 248, 296
CviKI_1 RGCY 4 cut(s) 71, 235, 248, 296
CviQI GTAC 2 cut(s) 13, 126
EciI GGCGGA 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 243
Eco147I AGGCCT 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 17
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 114, 227
FaiI YATR 7 cut(s) 36, 48, 80, 112, 131, 225, 239
FatI CATG 2 cut(s) 110, 223
Fnu4HI GCNGC 2 cut(s) 118, 143
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 118, 143
FspBI CTAG 2 cut(s) 299, 307
GlaI GCGC 1 cut(s) 109
GluI GCNGC 2 cut(s) 118, 143
HaeIII GGCC 1 cut(s) 248
HapII CCGG 1 cut(s) 18
HhaI GCGC 1 cut(s) 110
Hin1II CATG 2 cut(s) 114, 227
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HpaII CCGG 1 cut(s) 18
Hpy188I TCNGA 2 cut(s) 97, 220
HpyAV CCTTC 2 cut(s) 148, 286
HpyCH4IV ACGT 3 cut(s) 82, 99, 170
HpyCH4V TGCA 2 cut(s) 145, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpySE526I ACGT 3 cut(s) 82, 99, 170
Hsp92II CATG 2 cut(s) 114, 227
HspAI GCGC 1 cut(s) 108
LpnPI CCDG 3 cut(s) 31, 184, 217
Lsp1109I GCAGC 1 cut(s) 129
MaeI CTAG 2 cut(s) 299, 307
MaeII ACGT 3 cut(s) 82, 99, 170
MaeIII GTNAC 1 cut(s) 83
MluCI AATT 2 cut(s) 273, 286
MnlI CCTC 3 cut(s) 116, 128, 151
MseI TTAA 1 cut(s) 285
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 2 cut(s) 18, 19
MwoI GCNNNNNNNGC 1 cut(s) 114
NciI CCSGG 2 cut(s) 18, 19
NlaIII CATG 2 cut(s) 114, 227
NspI RCATGY 2 cut(s) 114, 227
PaeI GCATGC 1 cut(s) 227
PceI AGGCCT 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PkrI GCNGC 2 cut(s) 119, 144
RsaI GTAC 2 cut(s) 14, 127
RsaNI GTAC 2 cut(s) 13, 126
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 2 cut(s) 118, 143
ScrFI CCNGG 2 cut(s) 18, 19
SetI ASST 5 cut(s) 47, 85, 102, 127, 173
SfcI CTRYAG 1 cut(s) 129
SmaI CCCGGG 1 cut(s) 19
SphI GCATGC 1 cut(s) 227
Sse9I AATT 2 cut(s) 273, 286
SseBI AGGCCT 1 cut(s) 248
SsiI CCGC 2 cut(s) 117, 120
SspMI CTAG 2 cut(s) 299, 307
StuI AGGCCT 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 16, 17
StyI CCWWGG 1 cut(s) 243
TaiI ACGT 3 cut(s) 85, 102, 173
TaqI TCGA 3 cut(s) 67, 104, 271
TasI AATT 2 cut(s) 273, 286
TauI GCSGC 1 cut(s) 120
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseI GCWGC 1 cut(s) 142
TspMI CCCGGG 1 cut(s) 17
XceI RCATGY 2 cut(s) 114, 227
XmaI CCCGGG 1 cut(s) 17
XspI CTAG 2 cut(s) 299, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.