AT1G72640

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005411
Physical Location & Seq
Reverse (-)
27346156 .. 27348256
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72640.4

Sequence Viewer

Length: 939 bp
ATGGCGGGTACTTCTCTACCTTCGTGTCTCCTCAGTCAAGGACCTTCGTTACTCTTCTCTTCTTCGAATCAGGACTCAGAAGCTAATAAATGTCGAATTGGGATAACATCTGGAAAACGTTGTCTTGTTCGTTGTTTCGCTAAGAAGAAAATCAGTTTTGTGGATCAGATTCTCGATTATATCGAAGGCGGTCCCAAGCTTAGGAAATGGTATGGAGCTCCTGAACTTCGGCCAAAGGATGGATCTTTAAGTGGAGACGACGATGAATTTGAAGCAGAGGAAAAAGAAGATGATCTTGATGGAGAGAAAGACGTTGTTTTTGTAACTGATGGAGACAGTGATTTGGGTCAGATGATTATACTGCAACTGATTGTGAAAGGAACTCGGGTTAAAGCACTTGTGAAGGACAAAAGAAAGGCTTTGGAAGCTTTTGGATCTTATGTTGAGTTGACGACTGGAGATGCAAGCGACGAGCGTTTCTTAAAGAAAGCTTTTAAGGGTGTTGGTGCGGTCATATCCCCGACAGAAGGTTTCTTATCGATTGTCAAGAGTTTTAGAGGTGTAAAACACGCAGTTCTCTTGTCTCAGTTGTCTGTTTATGAAAGCAGCGGCGGAATTCAAGCTATGATGAATAGCAAAGCCAAAAAACTGGCCGAGCAAGATGAAAACGCCGCTATATCTTCAAATGTCCCTTATACAATCATAAGAACAGGCAAGCTGGAGAACAGTCCTGGAGGGAGTCAAGGCTTCAACTTTAGCGCGGGTGCTGCAGCCAAAGGAAGCATAAGCAAGGAAGATGCTGCTCGTATATGTGTTGAAGCACTAAGTGTGATCCCACCAACAGGGTTGATATTTGAGGTTACGAATGGAGAAGAGGTTGTATCTGACTGGGAAGGACAATTGATGAAAGTGATGCAGAGACAGAGTGACAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_10

Protein Analysis

312

Amino Acids

33.63

Weight (kDa)

5.56

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 102 - 175 8.3e-07 NmrA-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 239
AccII CGCG 1 cut(s) 761
AciI CCGC 7 cut(s) 5, 189, 509, 609, 612, 672, 761
AclI AACGTT 1 cut(s) 118
AclWI GGATC 4 cut(s) 171, 250, 442, 826
AcoI YGGCCR 2 cut(s) 230, 651
AcsI RAATTY 2 cut(s) 266, 615
AdeI CACNNNGTG 1 cut(s) 827
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 4 cut(s) 201, 239, 527, 842
AgsI TTSAA 5 cut(s) 272, 620, 684, 751, 818
AjnI CCWGG 1 cut(s) 730
AluBI AGCT 7 cut(s) 83, 199, 218, 428, 491, 623, 718
AluI AGCT 7 cut(s) 83, 199, 218, 428, 491, 623, 718
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 5 cut(s) 32, 249, 327, 588, 913
AlwI GGATC 4 cut(s) 171, 250, 442, 826
Ama87I CYCGRG 1 cut(s) 384
AoxI GGCC 2 cut(s) 230, 651
ApeKI GCWGC 4 cut(s) 606, 767, 770, 800
ApoI RAATTY 2 cut(s) 266, 615
ArsI GACNNNNNNTTYG 4 cut(s) 251, 283, 302, 334
AspLEI GCGC 1 cut(s) 761
AspS9I GGNCC 2 cut(s) 41, 191
AsuII TTCGAA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 384
AvaII GGWCC 2 cut(s) 41, 191
BanII GRGCYC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 4 cut(s) 618, 754, 782, 787
BccI CCATC 3 cut(s) 233, 293, 323
BciT130I CCWGG 1 cut(s) 732
BcoDI GTCTC 5 cut(s) 32, 249, 327, 588, 913
BfmI CTRYAG 1 cut(s) 768
BisI GCNGC 6 cut(s) 607, 610, 672, 768, 771, 801
BlsI GCNGC 6 cut(s) 608, 611, 673, 769, 772, 802
Bme1390I CCNGG 1 cut(s) 732
Bme18I GGWCC 2 cut(s) 41, 191
BmeT110I CYCGRG 1 cut(s) 384
BmgT120I GGNCC 2 cut(s) 41, 191
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 732
BmrI ACTGGG 1 cut(s) 898
BmsI GCATC 3 cut(s) 451, 787, 903
BmuI ACTGGG 1 cut(s) 898
BpmI CTGGAG 3 cut(s) 477, 740, 753
Bpu10I CCTNAGC 1 cut(s) 200
Bpu14I TTCGAA 1 cut(s) 65
Bsa29I ATCGAT 1 cut(s) 539
BsaXI ACNNNNNCTCC 2 cut(s) 861, 891
Bsc4I CCNNNNNNNGG 4 cut(s) 201, 239, 527, 842
Bse1I ACTGG 3 cut(s) 460, 654, 893
BseBI CCWGG 1 cut(s) 732
BseCI ATCGAT 1 cut(s) 539
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 4 cut(s) 201, 239, 527, 842
BseMII CTCAG 3 cut(s) 46, 90, 599
BseNI ACTGG 3 cut(s) 460, 654, 893
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 4 cut(s) 618, 754, 782, 787
Bsh1236I CGCG 1 cut(s) 761
BshFI GGCC 2 cut(s) 232, 653
BshVI ATCGAT 1 cut(s) 539
BsiHKAI GWGCWC 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 384
BslFI GGGAC 2 cut(s) 177, 674
BslI CCNNNNNNNGG 4 cut(s) 201, 239, 527, 842
BsmAI GTCTC 5 cut(s) 32, 249, 327, 588, 913
BsmBI CGTCTC 1 cut(s) 249
BsmFI GGGAC 2 cut(s) 177, 674
BsnI GGCC 2 cut(s) 232, 653
BsoBI CYCGRG 1 cut(s) 384
Bsp119I TTCGAA 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 5 cut(s) 163, 242, 292, 434, 831
BspACI CCGC 7 cut(s) 5, 189, 509, 609, 612, 672, 761
BspANI GGCC 2 cut(s) 232, 653
BspCNI CTCAG 3 cut(s) 45, 89, 598
BspDI ATCGAT 1 cut(s) 539
BspFNI CGCG 1 cut(s) 761
BspLI GGNNCC 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 772
BspPI GGATC 4 cut(s) 171, 250, 442, 826
BspT104I TTCGAA 1 cut(s) 65
BsrI ACTGG 3 cut(s) 460, 654, 893
BssMI GATC 5 cut(s) 163, 242, 292, 434, 831
Bst2UI CCWGG 1 cut(s) 732
Bst4CI ACNGT 2 cut(s) 338, 728
Bst6I CTCTTC 3 cut(s) 59, 64, 867
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 466, 716
BstDEI CTNAG 6 cut(s) 32, 76, 141, 200, 585, 824
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 761
BstHHI GCGC 1 cut(s) 761
BstKTI GATC 5 cut(s) 166, 245, 295, 437, 834
BstMAI GTCTC 5 cut(s) 32, 249, 327, 588, 913
BstMBI GATC 5 cut(s) 163, 242, 292, 434, 831
BstMWI GCNNNNNNNGC 2 cut(s) 425, 767
BstNI CCWGG 1 cut(s) 732
BstSCI CCNGG 1 cut(s) 730
BstSFI CTRYAG 1 cut(s) 768
BstUI CGCG 1 cut(s) 761
BstV1I GCAGC 4 cut(s) 618, 754, 782, 787
BstX2I RGATCY 2 cut(s) 242, 434
BstXI CCANNNNNNTGG 1 cut(s) 649
BstYI RGATCY 2 cut(s) 242, 434
Bsu15I ATCGAT 1 cut(s) 539
BsuRI GGCC 2 cut(s) 232, 653
BsuTUI ATCGAT 1 cut(s) 539
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 466, 716
CfoI GCGC 1 cut(s) 761
Cfr13I GGNCC 2 cut(s) 41, 191
ClaI ATCGAT 1 cut(s) 539
Csp6I GTAC 1 cut(s) 9
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 6 cut(s) 32, 76, 141, 200, 585, 824
DpnI GATC 5 cut(s) 165, 244, 294, 436, 833
DpnII GATC 5 cut(s) 163, 242, 292, 434, 831
DraIII CACNNNGTG 1 cut(s) 827
EaeI YGGCCR 2 cut(s) 230, 651
Eam1104I CTCTTC 3 cut(s) 59, 64, 867
EarI CTCTTC 3 cut(s) 59, 64, 867
EciI GGCGGA 1 cut(s) 627
Ecl136II GAGCTC 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 41, 191
Eco53kI GAGCTC 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 41
EcoRI GAATTC 1 cut(s) 615
EcoRII CCWGG 1 cut(s) 730
EcoT38I GRGCYC 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 249
FalI AAGNNNNNCTT 4 cut(s) 279, 311, 403, 435
FaqI GGGAC 2 cut(s) 177, 674
FauI CCCGC 1 cut(s) 754
Fnu4HI GCNGC 6 cut(s) 607, 610, 672, 768, 771, 801
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 6 cut(s) 607, 610, 672, 768, 771, 801
GlaI GCGC 1 cut(s) 760
GluI GCNGC 6 cut(s) 607, 610, 672, 768, 771, 801
GsuI CTGGAG 3 cut(s) 477, 740, 753
HaeIII GGCC 2 cut(s) 232, 653
HhaI GCGC 1 cut(s) 761
Hin6I GCGC 1 cut(s) 759
HinP1I GCGC 1 cut(s) 759
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HindIII AAGCTT 3 cut(s) 197, 426, 489
HinfI GANTC 4 cut(s) 67, 74, 169, 739
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 4 cut(s) 79, 168, 351, 886
Hpy188III TCNNGA 6 cut(s) 71, 111, 173, 221, 296, 547
Hpy8I GTNNAC 1 cut(s) 450
Hpy99I CGWCG 2 cut(s) 263, 473
HpyAV CCTTC 6 cut(s) 30, 54, 179, 397, 521, 887
HpyCH4III ACNGT 2 cut(s) 338, 728
HpyCH4IV ACGT 2 cut(s) 118, 312
HpyCH4V TGCA 4 cut(s) 364, 464, 770, 916
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 767
HpyF3I CTNAG 6 cut(s) 32, 76, 141, 200, 585, 824
HpySE526I ACGT 2 cut(s) 118, 312
HspAI GCGC 1 cut(s) 759
Kzo9I GATC 5 cut(s) 163, 242, 292, 434, 831
LmnI GCTCC 2 cut(s) 215, 223
Lsp1109I GCAGC 4 cut(s) 618, 754, 782, 787
LweI GCATC 3 cut(s) 451, 787, 903
MaeII ACGT 2 cut(s) 118, 312
MaeIII GTNAC 4 cut(s) 48, 322, 859, 926
MalI GATC 5 cut(s) 165, 244, 294, 436, 833
MboI GATC 5 cut(s) 163, 242, 292, 434, 831
MboII GAAGA 8 cut(s) 46, 51, 54, 157, 299, 672, 806, 884
MfeI CAATTG 1 cut(s) 899
MflI RGATCY 2 cut(s) 242, 434
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 4 cut(s) 96, 266, 615, 899
MlyI GAGTC 2 cut(s) 68, 748
MnlI CCTC 6 cut(s) 41, 271, 551, 728, 850, 868
MseI TTAA 4 cut(s) 248, 390, 482, 495
MspA1I CMGCKG 1 cut(s) 609
MspR9I CCNGG 1 cut(s) 732
MunI CAATTG 1 cut(s) 899
MvaI CCWGG 1 cut(s) 732
MvnI CGCG 1 cut(s) 761
MwoI GCNNNNNNNGC 2 cut(s) 425, 767
NdeII GATC 5 cut(s) 163, 242, 292, 434, 831
NlaIV GGNNCC 1 cut(s) 193
NmeAIII GCCGAG 1 cut(s) 679
NmuCI GTSAC 1 cut(s) 926
NspV TTCGAA 1 cut(s) 65
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PfeI GAWTC 2 cut(s) 67, 169
PflMI CCANNNNNTGG 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 730
PkrI GCNGC 6 cut(s) 608, 611, 673, 769, 772, 802
PleI GAGTC 2 cut(s) 68, 747
PpsI GAGTC 2 cut(s) 68, 747
PpuMI RGGWCCY 1 cut(s) 41
Psp124BI GAGCTC 1 cut(s) 220
Psp1406I AACGTT 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 730
PspGI CCWGG 1 cut(s) 730
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 2 cut(s) 41, 191
PspPPI RGGWCCY 1 cut(s) 41
PstI CTGCAG 1 cut(s) 772
PsuI RGATCY 2 cut(s) 242, 434
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SacI GAGCTC 1 cut(s) 220
SaqAI TTAA 4 cut(s) 248, 390, 482, 495
SatI GCNGC 6 cut(s) 607, 610, 672, 768, 771, 801
Sau3AI GATC 5 cut(s) 163, 242, 292, 434, 831
Sau96I GGNCC 2 cut(s) 41, 191
SchI GAGTC 2 cut(s) 68, 748
ScrFI CCNGG 1 cut(s) 732
SduI GDGCHC 1 cut(s) 220
SfaNI GCATC 3 cut(s) 451, 787, 903
SfcI CTRYAG 1 cut(s) 768
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 2 cut(s) 41, 191
Sse9I AATT 4 cut(s) 96, 266, 615, 899
SsiI CCGC 7 cut(s) 5, 189, 509, 609, 612, 672, 761
SstI GAGCTC 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 730
TaaI ACNGT 2 cut(s) 338, 728
TaiI ACGT 2 cut(s) 121, 315
TaqI TCGA 5 cut(s) 65, 94, 174, 183, 539
TasI AATT 4 cut(s) 96, 266, 615, 899
TauI GCSGC 2 cut(s) 612, 674
TfiI GAWTC 2 cut(s) 67, 169
Tru1I TTAA 4 cut(s) 248, 390, 482, 495
Tru9I TTAA 4 cut(s) 248, 390, 482, 495
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 4 cut(s) 606, 767, 770, 800
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 5 cut(s) 279, 615, 644, 678, 920
TspRI CASTG 1 cut(s) 343
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 41, 191
XapI RAATTY 2 cut(s) 266, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.