Rorug02G0390300
MYB Family

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003150
Physical Location & Seq
Forward (+)
49910377 .. 49917407
7031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0390300.1

Sequence Viewer

Length: 1461 bp
ATGAAGAGACAGAATCTGGCCACTGCAAATGTGAAGGAGTTTCCTGGCCGCATAACACGTGCTCGAGCTGCTTCATTAGATACATCCAGACAGTTTCCCCCATTAAAAGCATGCACACAACCCAAGCAGCAGAGTCAGAAGCCGGCTTTGCGTGCGAATCCAAAGAGAGCTTCTGTGGATGAGAACAATGAGAATGAGGCTGGTAATGCATGCGTCCAGCATAAGAGGAGGGCAGTGCTTCAGGATGTAACCAATGCTTTCTGTAAACCTTCATATGGGGACTGCTTCAATGCAACTAAAGTTCAGGCTAAGAAAAGAAAGCCAGCTAAAAGAGGTCAGGCAAGGGTCACAAAATTGACCCCTTCGATTTCTGTAGATTTGAAAACGGAGGTTGTGCATGAAACAGTAAAAACAGAACTTACATCGGACAGATTTATGCATTCAATGAATTTGGAAGATGGTGACAAACTTTTTCATTCGGCTGCCTTAAGTGGGGATGCTATTGCTATCCATCAGTTGGAACATCAGAGTTCTGAAGTGGATTCAAAAGTCCAAAGTTGTCCTAATAAAGCAGACATTGGTAACCTTTTGATGAACATGATCACATTGAGTAACCCGGATATTGTTGACATTGATGCTGGTCACAAGGATCCTCAATTGTGTAGCCTCTATGCCCCTGATATCTATAACAACTTACGTGTTGCAGAGCTTTCCCGAAGGCCATTTCCTAGTTTTATGGAAACGACACAACGCGATATCACCACAAGTATGCGGGGTATTTTAATAGATTGGCTAGTGGAGGTGTCAGAGGAATATAAGTTGGTGCCAGATACCCTTTACCTCACAGTATATCTGATAGATTGGTTTCTCTCCAAGAATTACATTGAAAGACACAGACTTCAACTGCTTGGCATCACTTGCATGCTGATTGCCTCGAAATATGAAGAAATTTGTGCACCACGTTTGGATGAATTTTGTTTCATGACAGACAACACTTACACGAAAGAGGATGTATTGCAAATGGAGAATCAAGTCTTGAAGTACTTAGGCTTTCAGCTTTTTGCACCAACAGCAAAAAGTTTCCTCAGGAGATTTCTTTTAGCAGCACAAGCTTCTTATAAGAGCCCTAGCCTTGAGCTGGAGTACTTGGCCAATTATCTTGCCGAGCTAGCATTGGTTGACTATGGCTTTTTGAAGTTCCTACCTTCAATGATTGCTGCATCAGCTGTGTTTCTATCCAAATGGACCTTAGACCAGTCTAGTCACCCATGGAATCCAATCCTAGAACACTATACCTCTTACAAGCCATCAGATTTGAAGATTCCAGTTCTTGCTTTGCAAGATTTGCAATTGAACACAAATGGCTGTCCTCTGAGTGCTGTACGAATGAAGTATAAGCAACTGAAGTTTAAATCCATCGCGGCTTTATCATCCCCAAAGCTTCCTGAAACACTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_10

Protein Analysis

486

Amino Acids

55.0

Weight (kDa)

8.71

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 227 - 353 1e-44 Cyclin, N-terminal domain
Cyclin_C PF02984 356 - 478 4.3e-33 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1119
AccB1I GGYRCC 1 cut(s) 823
AccB7I CCANNNNNTGG 1 cut(s) 517
AccII CGCG 2 cut(s) 753, 1421
AciI CCGC 3 cut(s) 49, 772, 1421
AclWI GGATC 2 cut(s) 644, 657
AcoI YGGCCR 3 cut(s) 18, 46, 1149
AcsI RAATTY 3 cut(s) 448, 948, 971
AcuI CTGAAG 3 cut(s) 224, 555, 1424
AcvI CACGTG 1 cut(s) 59
AfaI GTAC 3 cut(s) 1043, 1145, 1383
AfiI CCNNNNNNNGG 4 cut(s) 275, 492, 517, 1138
AflII CTTAAG 1 cut(s) 487
AflIII ACRYGT 2 cut(s) 56, 697
AjnI CCWGG 1 cut(s) 43
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
Alw21I GWGCWC 2 cut(s) 64, 958
Alw44I GTGCAC 1 cut(s) 954
AlwI GGATC 2 cut(s) 644, 657
AlwNI CAGNNNCTG 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 4 cut(s) 18, 46, 719, 1149
ApaLI GTGCAC 1 cut(s) 954
ApeKI GCWGC 5 cut(s) 68, 127, 482, 1103, 1217
ApoI RAATTY 3 cut(s) 448, 948, 971
AspS9I GGNCC 1 cut(s) 1245
AsuC2I CCSGG 1 cut(s) 617
AsuHPI GGTGA 3 cut(s) 473, 751, 1256
AsuNHI GCTAGC 1 cut(s) 1168
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 1 cut(s) 1245
AxyI CCTNAGG 1 cut(s) 1085
BaeGI GKGCMC 1 cut(s) 958
BalI TGGCCA 2 cut(s) 20, 1151
BamHI GGATCC 1 cut(s) 649
BanI GGYRCC 1 cut(s) 823
BanII GRGCYC 1 cut(s) 1127
BbrPI CACGTG 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 64, 958
BbvI GCAGC 5 cut(s) 55, 139, 469, 1115, 1204
BccI CCATC 4 cut(s) 452, 519, 1315, 1424
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 1 cut(s) 600
BcnI CCSGG 1 cut(s) 617
BfaI CTAG 6 cut(s) 729, 794, 1128, 1169, 1260, 1283
BfmI CTRYAG 1 cut(s) 372
BfrI CTTAAG 1 cut(s) 487
BisI GCNGC 7 cut(s) 49, 69, 128, 483, 1104, 1218, 1422
BlsI GCNGC 7 cut(s) 50, 70, 129, 484, 1105, 1219, 1423
BmcAI AGTACT 2 cut(s) 1043, 1145
Bme1390I CCNGG 2 cut(s) 45, 617
Bme18I GGWCC 1 cut(s) 1245
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 1245
BmiI GGNNCC 2 cut(s) 651, 825
BmrFI CCNGG 2 cut(s) 45, 617
BmsI GCATC 4 cut(s) 487, 625, 921, 1229
BmtI GCTAGC 1 cut(s) 1172
BpmI CTGGAG 1 cut(s) 1160
BpuEI CTTGAG 1 cut(s) 1154
BpuMI CCSGG 1 cut(s) 617
BsaAI YACGTR 2 cut(s) 59, 698
BsaJI CCNNGG 1 cut(s) 1268
Bsc4I CCNNNNNNNGG 4 cut(s) 275, 492, 517, 1138
Bse118I RCCGGY 1 cut(s) 142
Bse1I ACTGG 2 cut(s) 1255, 1325
Bse21I CCTNAGG 1 cut(s) 1085
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 1268
BseGI GGATG 7 cut(s) 83, 184, 250, 502, 973, 1015, 1430
BseLI CCNNNNNNNGG 4 cut(s) 275, 492, 517, 1138
BseMII CTCAG 2 cut(s) 1099, 1364
BseNI ACTGG 2 cut(s) 1255, 1325
BseRI GAGGAG 1 cut(s) 241
BseSI GKGCMC 1 cut(s) 958
BseXI GCAGC 5 cut(s) 55, 139, 469, 1115, 1204
Bsh1236I CGCG 2 cut(s) 753, 1421
BshFI GGCC 4 cut(s) 20, 48, 721, 1151
BshNI GGYRCC 1 cut(s) 823
BsiHKAI GWGCWC 2 cut(s) 64, 958
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 2 cut(s) 143, 617
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 4 cut(s) 275, 492, 517, 1138
BsmFI GGGAC 1 cut(s) 293
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 4 cut(s) 20, 48, 721, 1151
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 3 cut(s) 64, 958, 1127
Bsp143I GATC 2 cut(s) 600, 649
Bsp19I CCATGG 1 cut(s) 1268
BspACI CCGC 3 cut(s) 49, 772, 1421
BspANI GGCC 4 cut(s) 20, 48, 721, 1151
BspCNI CTCAG 2 cut(s) 1098, 1365
BspFNI CGCG 2 cut(s) 753, 1421
BspHI TCATGA 1 cut(s) 981
BspLI GGNNCC 2 cut(s) 651, 825
BspOI GCTAGC 1 cut(s) 1172
BspPI GGATC 2 cut(s) 644, 657
BspT107I GGYRCC 1 cut(s) 823
BspTI CTTAAG 1 cut(s) 487
BsrFI RCCGGY 1 cut(s) 142
BsrI ACTGG 2 cut(s) 1255, 1325
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 1268
BssMI GATC 2 cut(s) 600, 649
BssT1I CCWWGG 1 cut(s) 1268
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 3 cut(s) 93, 406, 847
BstAFI CTTAAG 1 cut(s) 487
BstAPI GCANNNNNTGC 2 cut(s) 918, 1345
BstBAI YACGTR 2 cut(s) 59, 698
BstC8I GCNNGC 7 cut(s) 112, 144, 153, 211, 324, 923, 1170
BstDEI CTNAG 5 cut(s) 309, 1045, 1085, 1249, 1373
BstDSI CCRYGG 1 cut(s) 1268
BstEII GGTNACC 1 cut(s) 581
BstF5I GGATG 7 cut(s) 83, 184, 250, 502, 973, 1015, 1430
BstFNI CGCG 2 cut(s) 753, 1421
BstKTI GATC 2 cut(s) 603, 652
BstMBI GATC 2 cut(s) 600, 649
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 3 cut(s) 114, 213, 925
BstPI GGTNACC 1 cut(s) 581
BstSCI CCNGG 2 cut(s) 43, 615
BstSFI CTRYAG 1 cut(s) 372
BstSLI GKGCMC 1 cut(s) 958
BstUI CGCG 2 cut(s) 753, 1421
BstV1I GCAGC 5 cut(s) 55, 139, 469, 1115, 1204
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
Bsu36I CCTNAGG 1 cut(s) 1085
BsuRI GGCC 4 cut(s) 20, 48, 721, 1151
BtgI CCRYGG 1 cut(s) 1268
BtgZI GCGATG 1 cut(s) 1402
BtsCI GGATG 7 cut(s) 83, 184, 250, 502, 973, 1015, 1430
BtsI GCAGTG 2 cut(s) 21, 240
BtsIMutI CAGTG 2 cut(s) 21, 240
Cac8I GCNNGC 7 cut(s) 112, 144, 153, 211, 324, 923, 1170
CaiI CAGNNNCTG 1 cut(s) 16
CciI TCATGA 1 cut(s) 981
Cfr10I RCCGGY 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 1245
CseI GACGC 1 cut(s) 202
Csp6I GTAC 3 cut(s) 1042, 1144, 1382
CviAII CATG 7 cut(s) 111, 210, 398, 598, 922, 982, 1269
CviQI GTAC 3 cut(s) 1042, 1144, 1382
DdeI CTNAG 5 cut(s) 309, 1045, 1085, 1249, 1373
DpnI GATC 2 cut(s) 602, 651
DpnII GATC 2 cut(s) 600, 649
DraI TTTAAA 1 cut(s) 1411
EaeI YGGCCR 3 cut(s) 18, 46, 1149
Eco130I CCWWGG 1 cut(s) 1268
Eco24I GRGCYC 1 cut(s) 1127
Eco32I GATATC 2 cut(s) 682, 757
Eco47I GGWCC 1 cut(s) 1245
Eco57I CTGAAG 3 cut(s) 224, 555, 1424
Eco72I CACGTG 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 1085
Eco88I CYCGRG 1 cut(s) 63
Eco91I GGTNACC 1 cut(s) 581
EcoO65I GGTNACC 1 cut(s) 581
EcoRII CCWGG 1 cut(s) 43
EcoRV GATATC 2 cut(s) 682, 757
EcoT14I CCWWGG 1 cut(s) 1268
EcoT22I ATGCAT 2 cut(s) 211, 441
EcoT38I GRGCYC 1 cut(s) 1127
ErhI CCWWGG 1 cut(s) 1268
FaeI CATG 7 cut(s) 114, 213, 401, 601, 925, 985, 1272
FaqI GGGAC 1 cut(s) 293
FatI CATG 7 cut(s) 110, 209, 397, 597, 921, 981, 1268
FauI CCCGC 1 cut(s) 765
FauNDI CATATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 600
Fnu4HI GCNGC 7 cut(s) 49, 69, 128, 483, 1104, 1218, 1422
FokI GGATG 7 cut(s) 70, 191, 257, 509, 980, 1022, 1417
FriOI GRGCYC 1 cut(s) 1127
Fsp4HI GCNGC 7 cut(s) 49, 69, 128, 483, 1104, 1218, 1422
FspBI CTAG 6 cut(s) 729, 794, 1128, 1169, 1260, 1283
GluI GCNGC 7 cut(s) 49, 69, 128, 483, 1104, 1218, 1422
GsuI CTGGAG 1 cut(s) 1160
HaeIII GGCC 4 cut(s) 20, 48, 721, 1151
HapII CCGG 2 cut(s) 143, 617
HgaI GACGC 1 cut(s) 202
Hin1II CATG 7 cut(s) 114, 213, 401, 601, 925, 985, 1272
HincII GTYRAC 2 cut(s) 628, 1180
HindII GTYRAC 2 cut(s) 628, 1180
HindIII AAGCTT 2 cut(s) 1110, 1439
HinfI GANTC 7 cut(s) 13, 133, 157, 542, 1027, 1273, 1321
HpaII CCGG 2 cut(s) 143, 617
HphI GGTGA 3 cut(s) 473, 751, 1256
Hpy166II GTNNAC 4 cut(s) 266, 628, 956, 1180
Hpy188I TCNGA 8 cut(s) 138, 427, 528, 535, 808, 855, 1312, 1374
Hpy188III TCNNGA 7 cut(s) 87, 242, 714, 982, 1036, 1087, 1445
Hpy8I GTNNAC 4 cut(s) 266, 628, 956, 1180
HpyAV CCTTC 5 cut(s) 28, 279, 372, 711, 1215
HpyCH4III ACNGT 3 cut(s) 93, 406, 847
HpyCH4IV ACGT 3 cut(s) 58, 697, 961
HpyF3I CTNAG 5 cut(s) 309, 1045, 1085, 1249, 1373
HpySE526I ACGT 3 cut(s) 58, 697, 961
Hsp92II CATG 7 cut(s) 114, 213, 401, 601, 925, 985, 1272
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
Ksp22I TGATCA 1 cut(s) 600
Kzo9I GATC 2 cut(s) 600, 649
Lsp1109I GCAGC 5 cut(s) 55, 139, 469, 1115, 1204
LweI GCATC 4 cut(s) 487, 625, 921, 1229
MaeI CTAG 6 cut(s) 729, 794, 1128, 1169, 1260, 1283
MaeII ACGT 3 cut(s) 58, 697, 961
MaeIII GTNAC 7 cut(s) 247, 346, 461, 581, 611, 641, 1262
MalI GATC 2 cut(s) 602, 651
MboI GATC 2 cut(s) 600, 649
MboII GAAGA 4 cut(s) 16, 467, 956, 1330
MfeI CAATTG 2 cut(s) 656, 1349
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 3 cut(s) 64, 958, 1127
MlsI TGGCCA 2 cut(s) 20, 1151
MluCI AATT 8 cut(s) 353, 448, 656, 877, 948, 971, 1153, 1349
MluNI TGGCCA 2 cut(s) 20, 1151
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 498
Mox20I TGGCCA 2 cut(s) 20, 1151
Mph1103I ATGCAT 2 cut(s) 211, 441
MroNI GCCGGC 1 cut(s) 142
MscI TGGCCA 2 cut(s) 20, 1151
MseI TTAA 4 cut(s) 104, 488, 782, 1410
MslI CAYNNNNRTG 2 cut(s) 767, 920
Msp20I TGGCCA 2 cut(s) 20, 1151
MspA1I CMGCKG 1 cut(s) 1226
MspCI CTTAAG 1 cut(s) 487
MspI CCGG 2 cut(s) 143, 617
MspR9I CCNGG 2 cut(s) 45, 617
MunI CAATTG 2 cut(s) 656, 1349
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 1 cut(s) 45
MvnI CGCG 2 cut(s) 753, 1421
NaeI GCCGGC 1 cut(s) 144
NciI CCSGG 1 cut(s) 617
NcoI CCATGG 1 cut(s) 1268
NdeI CATATG 1 cut(s) 274
NdeII GATC 2 cut(s) 600, 649
NgoMIV GCCGGC 1 cut(s) 142
NheI GCTAGC 1 cut(s) 1168
NlaIII CATG 7 cut(s) 114, 213, 401, 601, 925, 985, 1272
NlaIV GGNNCC 2 cut(s) 651, 825
NmeAIII GCCGAG 1 cut(s) 1189
NmuCI GTSAC 4 cut(s) 346, 461, 641, 1262
NsiI ATGCAT 2 cut(s) 211, 441
NspI RCATGY 3 cut(s) 114, 213, 925
PaeI GCATGC 3 cut(s) 114, 213, 925
PaeR7I CTCGAG 1 cut(s) 63
PagI TCATGA 1 cut(s) 981
PctI GAATGC 1 cut(s) 439
PdiI GCCGGC 1 cut(s) 144
PfeI GAWTC 6 cut(s) 13, 157, 542, 1027, 1273, 1321
PflMI CCANNNNNTGG 1 cut(s) 517
PkrI GCNGC 7 cut(s) 50, 70, 129, 484, 1105, 1219, 1423
PleI GAGTC 1 cut(s) 141
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
PpsI GAGTC 1 cut(s) 141
Ppu21I YACGTR 2 cut(s) 59, 698
PsiI TTATAA 1 cut(s) 1119
Psp6I CCWGG 1 cut(s) 43
PspCI CACGTG 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 581
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 651, 825
PspPI GGNCC 1 cut(s) 1245
PspXI VCTCGAGB 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 649
PvuII CAGCTG 1 cut(s) 1226
RsaI GTAC 3 cut(s) 1043, 1145, 1383
RsaNI GTAC 3 cut(s) 1042, 1144, 1382
RseI CAYNNNNRTG 2 cut(s) 767, 920
SaqAI TTAA 4 cut(s) 104, 488, 782, 1410
SatI GCNGC 7 cut(s) 49, 69, 128, 483, 1104, 1218, 1422
Sau3AI GATC 2 cut(s) 600, 649
Sau96I GGNCC 1 cut(s) 1245
ScaI AGTACT 2 cut(s) 1043, 1145
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 2 cut(s) 45, 617
SduI GDGCHC 3 cut(s) 64, 958, 1127
SfaNI GCATC 4 cut(s) 487, 625, 921, 1229
SfcI CTRYAG 1 cut(s) 372
Sfr274I CTCGAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 1245
SlaI CTCGAG 1 cut(s) 63
SmiMI CAYNNNNRTG 2 cut(s) 767, 920
SmlI CTYRAG 3 cut(s) 63, 487, 1133
SmoI CTYRAG 3 cut(s) 63, 487, 1133
SphI GCATGC 3 cut(s) 114, 213, 925
Sse9I AATT 8 cut(s) 353, 448, 656, 877, 948, 971, 1153, 1349
SsiI CCGC 3 cut(s) 49, 772, 1421
SspMI CTAG 6 cut(s) 729, 794, 1128, 1169, 1260, 1283
StyD4I CCNGG 2 cut(s) 43, 615
StyI CCWWGG 1 cut(s) 1268
TaaI ACNGT 3 cut(s) 93, 406, 847
TaiI ACGT 3 cut(s) 61, 700, 964
TaqI TCGA 3 cut(s) 64, 365, 935
TasI AATT 8 cut(s) 353, 448, 656, 877, 948, 971, 1153, 1349
TatI WGTACW 2 cut(s) 1041, 1143
TauI GCSGC 2 cut(s) 51, 1424
TfiI GAWTC 6 cut(s) 13, 157, 542, 1027, 1273, 1321
Tru1I TTAA 4 cut(s) 104, 488, 782, 1410
Tru9I TTAA 4 cut(s) 104, 488, 782, 1410
TscAI CASTG 2 cut(s) 28, 240
TseFI GTSAC 4 cut(s) 346, 461, 641, 1262
TseI GCWGC 5 cut(s) 68, 127, 482, 1103, 1217
Tsp45I GTSAC 4 cut(s) 346, 461, 641, 1262
TspGWI ACGGA 1 cut(s) 401
TspRI CASTG 2 cut(s) 28, 240
Van91I CCANNNNNTGG 1 cut(s) 517
Vha464I CTTAAG 1 cut(s) 487
VneI GTGCAC 1 cut(s) 954
VpaK11BI GGWCC 1 cut(s) 1245
XapI RAATTY 3 cut(s) 448, 948, 971
XceI RCATGY 3 cut(s) 114, 213, 925
XhoI CTCGAG 1 cut(s) 63
XspI CTAG 6 cut(s) 729, 794, 1128, 1169, 1260, 1283
ZrmI AGTACT 2 cut(s) 1043, 1145
Zsp2I ATGCAT 2 cut(s) 211, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.