pycom09g10240
MYB Family

isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
8383041 .. 8386612
3572 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10240.5

Sequence Viewer

Length: 1392 bp
ATGGAAACAGTGGTCGGTGTTGAGGGGAATGATGAAGGGATGTGTGAGGAGAGTGGGGTTGAGAAAAGTAGCTCTTCTTTGTCTTCGCCAAAGCAGATTGCCGATCCTGTTGTATACAAGCTCGTTCGGGTTGAAGGTGATGGGAGATTAGTGCCAGCAACAGATGATGAAGTAATGGAAGTTGAGGATTTTCTTGTTGATGAGACGGTTGAATTACCTGTTATTACAGAGGCTGGAAATGGTTGGTGCATTTCCAACGAAGAGTCTTCCTCTGGGAAACCTCAGAAGGAAAGCTCAGAAGGTGTCTCACATTCAGAGAACACAGAAGCTGATGTGAAATTAAGTGCACGGCTTGAGGATATTGTTCCTTCTTCATCACTAAGTCCAGATGGAAGCCATATTAATGAATCTGGGAGAATTGGGGAGTGCTCAAAACAACCGCTGGATGGACCAATAGAAAGTGGGTCATCAGCTTCTGTCATCTGCACTGGTCCAAAGCCTGATATTAATACACTAAAGGGGGAGATATGCTTGGACAACCTATCAATTAGAGAACTTCATGAATTATTTCGGGCAACTTTTGGGAGAGAAACTACTGTTAAGGACAAGTTGTGGCTTAAGAGGAGGATCACAATGGCGTTGACTAACTCTTGTGATGTTTCAACAACAACTTTCACTATTGTAGATAACAAATTGGTGAACAAGGGTAAAGATGATAGCATTCAGAACGCAGATGGTATGCTCACTGAGGGGTCAGATGGTGAAGCAAAGAATCTTGGGTATGAAACTTCACCAACTTGCCACAGTAGCAAAATGGAAAATCATGTCACTGTTTCAGGCAAGAGATTGGTAAACATTAGTGCAGAACTGGATTGTGGAAGTGAGGACCTTCACACAGATCAGAGAGCTGCCAAACGAATTCGAAAGCCCACTAAGAGATATATTGAAGAGCTTTCTGAAGTTGAATCAAAAGATTGTAGCCCAAAAGTGATTAGTCCAGTTAAAAGTGCGGGACAGCAACAAACATCTCCAAAATCTTGTAGGCCTCTTGGAAATGTCCCTTTAAATGAGAGAGCTATTGCCACCAGGTTGGACCCTCTTGGAAGTGTGACAAATGTCCCTCCAAATGAGAGAACGTTTGTCACCAGGTTGGATTCTCTTGGCGGATCTGGGGTTCAGGTTCCTTATGTTTCTCGAGTTCGTAGAAGCCGTCCAAGGAAAAATATTATGGCCCTTATGAAGTTTGATATGAATGGAATGGGTGTGACAGCTAAACTTGTAAAAGAGGCCTTTAGTGTGCGTAGTTCTGTATCAGAGAGTGAGCATGCAGACAAAGTCTTGAAAGTCAGATCTGCTTCTGAACGGATGAAACCACGGTGTATGTACTGCTGA

Protein Analysis

464

Amino Acids

50.35

Weight (kDa)

5.4

Isoelectric Point (pI)

53.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 114
AciI CCGC 3 cut(s) 440, 1010, 1164
AclI AACGTT 1 cut(s) 1136
AclWI GGATC 3 cut(s) 98, 635, 1174
AcsI RAATTY 1 cut(s) 918
AcuI CTGAAG 1 cut(s) 978
AfaI GTAC 1 cut(s) 1385
AfiI CCNNNNNNNGG 1 cut(s) 446
AflII CTTAAG 1 cut(s) 617
AgsI TTSAA 6 cut(s) 134, 212, 663, 947, 965, 1342
AjnI CCWGG 2 cut(s) 1085, 1145
AloI GAACNNNNNNTCC 2 cut(s) 1158, 1190
AluBI AGCT 9 cut(s) 72, 121, 294, 329, 473, 908, 952, 1076, 1271
AluI AGCT 9 cut(s) 72, 121, 294, 329, 473, 908, 952, 1076, 1271
Alw21I GWGCWC 2 cut(s) 349, 431
Alw26I GTCTC 2 cut(s) 197, 310
Alw44I GTGCAC 1 cut(s) 345
AlwI GGATC 3 cut(s) 98, 635, 1174
AlwNI CAGNNNCTG 3 cut(s) 233, 329, 476
Ama87I CYCGRG 1 cut(s) 1194
AoxI GGCC 3 cut(s) 1043, 1230, 1287
ApaLI GTGCAC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 908
ApoI RAATTY 1 cut(s) 918
AseI ATTAAT 2 cut(s) 402, 507
Asp700I GAANNNNTTC 1 cut(s) 567
AspS9I GGNCC 5 cut(s) 449, 491, 886, 1093, 1231
AsuHPI GGTGA 5 cut(s) 149, 709, 773, 783, 1135
AsuII TTCGAA 1 cut(s) 922
AvaI CYCGRG 1 cut(s) 1194
AvaII GGWCC 4 cut(s) 449, 491, 886, 1093
BaeGI GKGCMC 1 cut(s) 349
BbsI GAAGAC 2 cut(s) 75, 258
Bbv12I GWGCWC 2 cut(s) 349, 431
BbvI GCAGC 1 cut(s) 895
BccI CCATC 5 cut(s) 134, 383, 440, 728, 752
BceAI ACGGC 2 cut(s) 365, 1194
BciT130I CCWGG 2 cut(s) 1087, 1147
BcoDI GTCTC 2 cut(s) 197, 310
BfrI CTTAAG 1 cut(s) 617
BglII AGATCT 1 cut(s) 1349
BisI GCNGC 1 cut(s) 909
BlsI GCNGC 1 cut(s) 910
Bme1390I CCNGG 2 cut(s) 1087, 1147
Bme18I GGWCC 4 cut(s) 449, 491, 886, 1093
BmeT110I CYCGRG 1 cut(s) 1194
BmgT120I GGNCC 5 cut(s) 449, 491, 886, 1093, 1231
BmiI GGNNCC 2 cut(s) 1095, 1182
BmrFI CCNGG 2 cut(s) 1087, 1147
BoxI GACNNNNGTC 1 cut(s) 1115
BpiI GAAGAC 2 cut(s) 75, 258
BplI GAGNNNNNCTC 2 cut(s) 254, 286
Bpu14I TTCGAA 1 cut(s) 922
BpuEI CTTGAG 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 1214, 1373
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse1I ACTGG 3 cut(s) 493, 873, 998
BseBI CCWGG 2 cut(s) 1087, 1147
BseDI CCNNGG 2 cut(s) 1214, 1373
BseGI GGATG 3 cut(s) 45, 451, 1371
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMII CTCAG 3 cut(s) 296, 309, 738
BseNI ACTGG 3 cut(s) 493, 873, 998
BseRI GAGGAG 2 cut(s) 62, 637
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 1 cut(s) 895
BsgI GTGCAG 2 cut(s) 469, 882
BshFI GGCC 3 cut(s) 1045, 1232, 1289
BsiHKAI GWGCWC 2 cut(s) 349, 431
BsiHKCI CYCGRG 1 cut(s) 1194
BslFI GGGAC 3 cut(s) 1026, 1043, 1103
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 2 cut(s) 197, 310
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 3 cut(s) 1026, 1043, 1103
BsmI GAATGC 1 cut(s) 720
BsnI GGCC 3 cut(s) 1045, 1232, 1289
BsoBI CYCGRG 1 cut(s) 1194
Bsp119I TTCGAA 1 cut(s) 922
Bsp1286I GDGCHC 2 cut(s) 349, 431
Bsp143I GATC 5 cut(s) 103, 627, 898, 1166, 1349
BspACI CCGC 3 cut(s) 440, 1010, 1164
BspANI GGCC 3 cut(s) 1045, 1232, 1289
BspCNI CTCAG 3 cut(s) 295, 308, 739
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 2 cut(s) 1095, 1182
BspPI GGATC 3 cut(s) 98, 635, 1174
BspQI GCTCTTC 2 cut(s) 79, 942
BspT104I TTCGAA 1 cut(s) 922
BspTI CTTAAG 1 cut(s) 617
BsrI ACTGG 3 cut(s) 493, 873, 998
BssECI CCNNGG 2 cut(s) 1214, 1373
BssMI GATC 5 cut(s) 103, 627, 898, 1166, 1349
BssNAI GTATAC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 1214
Bst1107I GTATAC 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 1087, 1147
Bst4CI ACNGT 6 cut(s) 10, 208, 598, 806, 832, 1377
Bst6I CTCTTC 3 cut(s) 79, 255, 942
BstAFI CTTAAG 1 cut(s) 617
BstBI TTCGAA 1 cut(s) 922
BstC8I GCNNGC 2 cut(s) 156, 1326
BstDEI CTNAG 5 cut(s) 282, 295, 380, 747, 933
BstDSI CCRYGG 1 cut(s) 1373
BstF5I GGATG 3 cut(s) 45, 451, 1371
BstKTI GATC 5 cut(s) 106, 630, 901, 1169, 1352
BstMAI GTCTC 2 cut(s) 197, 310
BstMBI GATC 5 cut(s) 103, 627, 898, 1166, 1349
BstMWI GCNNNNNNNGC 1 cut(s) 807
BstNI CCWGG 2 cut(s) 1087, 1147
BstNSI RCATGY 1 cut(s) 1328
BstPAI GACNNNNGTC 1 cut(s) 1115
BstSCI CCNGG 2 cut(s) 1085, 1145
BstSLI GKGCMC 1 cut(s) 349
BstV1I GCAGC 1 cut(s) 895
BstV2I GAAGAC 2 cut(s) 75, 258
BstX2I RGATCY 2 cut(s) 1166, 1349
BstXI CCANNNNNNTGG 1 cut(s) 1090
BstYI RGATCY 2 cut(s) 1166, 1349
BstZ17I GTATAC 1 cut(s) 115
BsuRI GGCC 3 cut(s) 1045, 1232, 1289
BtgI CCRYGG 1 cut(s) 1373
BtsCI GGATG 3 cut(s) 45, 451, 1371
BtsIMutI CAGTG 4 cut(s) 15, 486, 744, 828
Cac8I GCNNGC 2 cut(s) 156, 1326
CaiI CAGNNNCTG 3 cut(s) 233, 329, 476
CciI TCATGA 1 cut(s) 559
Cfr13I GGNCC 5 cut(s) 449, 491, 886, 1093, 1231
CsiI ACCWGGT 2 cut(s) 1085, 1145
Csp6I GTAC 1 cut(s) 1384
CviAII CATG 3 cut(s) 560, 824, 1325
CviQI GTAC 1 cut(s) 1384
DdeI CTNAG 5 cut(s) 282, 295, 380, 747, 933
DpnI GATC 5 cut(s) 105, 629, 900, 1168, 1351
DpnII GATC 5 cut(s) 103, 627, 898, 1166, 1349
DraI TTTAAA 1 cut(s) 1065
Eam1104I CTCTTC 3 cut(s) 79, 255, 942
EarI CTCTTC 3 cut(s) 79, 255, 942
EciI GGCGGA 1 cut(s) 1179
Eco130I CCWWGG 1 cut(s) 1214
Eco147I AGGCCT 2 cut(s) 1045, 1289
Eco47I GGWCC 4 cut(s) 449, 491, 886, 1093
Eco57I CTGAAG 1 cut(s) 978
Eco88I CYCGRG 1 cut(s) 1194
EcoO109I RGGNCCY 1 cut(s) 886
EcoRI GAATTC 1 cut(s) 918
EcoRII CCWGG 2 cut(s) 1085, 1145
EcoT14I CCWWGG 1 cut(s) 1214
ErhI CCWWGG 1 cut(s) 1214
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 3 cut(s) 563, 827, 1328
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FaqI GGGAC 3 cut(s) 1026, 1043, 1103
FatI CATG 3 cut(s) 559, 823, 1324
FauI CCCGC 1 cut(s) 1003
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 909
FokI GGATG 3 cut(s) 52, 458, 1378
Fsp4HI GCNGC 1 cut(s) 909
GluI GCNGC 1 cut(s) 909
HaeIII GGCC 3 cut(s) 1045, 1232, 1289
Hin1II CATG 3 cut(s) 563, 827, 1328
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HinfI GANTC 5 cut(s) 263, 407, 772, 965, 1154
HphI GGTGA 5 cut(s) 149, 709, 773, 783, 1135
Hpy166II GTNNAC 5 cut(s) 115, 347, 642, 700, 853
Hpy188III TCNNGA 4 cut(s) 386, 560, 1194, 1339
Hpy8I GTNNAC 5 cut(s) 115, 347, 642, 700, 853
HpyAV CCTTC 6 cut(s) 29, 128, 280, 293, 378, 899
HpyCH4III ACNGT 6 cut(s) 10, 208, 598, 806, 832, 1377
HpyCH4IV ACGT 1 cut(s) 1136
HpyCH4V TGCA 5 cut(s) 249, 347, 486, 863, 1328
HpyF10VI GCNNNNNNNGC 1 cut(s) 807
HpyF3I CTNAG 5 cut(s) 282, 295, 380, 747, 933
HpySE526I ACGT 1 cut(s) 1136
Hsp92II CATG 3 cut(s) 563, 827, 1328
Kzo9I GATC 5 cut(s) 103, 627, 898, 1166, 1349
LguI GCTCTTC 2 cut(s) 79, 942
Lsp1109I GCAGC 1 cut(s) 895
MabI ACCWGGT 2 cut(s) 1085, 1145
MaeII ACGT 1 cut(s) 1136
MaeIII GTNAC 4 cut(s) 826, 1108, 1141, 1264
MalI GATC 5 cut(s) 105, 629, 900, 1168, 1351
MboI GATC 5 cut(s) 103, 627, 898, 1166, 1349
MboII GAAGA 6 cut(s) 66, 75, 258, 272, 363, 959
MflI RGATCY 2 cut(s) 1166, 1349
MhlI GDGCHC 2 cut(s) 349, 431
MluCI AATT 7 cut(s) 212, 338, 417, 546, 563, 692, 918
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 3 cut(s) 279, 1071, 1131
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 7 cut(s) 341, 402, 507, 600, 618, 1002, 1064
MslI CAYNNNNRTG 1 cut(s) 402
MspA1I CMGCKG 1 cut(s) 442
MspCI CTTAAG 1 cut(s) 617
MspR9I CCNGG 2 cut(s) 1087, 1147
Mva1269I GAATGC 1 cut(s) 720
MvaI CCWGG 2 cut(s) 1087, 1147
MwoI GCNNNNNNNGC 1 cut(s) 807
NdeII GATC 5 cut(s) 103, 627, 898, 1166, 1349
NlaIII CATG 3 cut(s) 563, 827, 1328
NlaIV GGNNCC 2 cut(s) 1095, 1182
NmuCI GTSAC 4 cut(s) 826, 1108, 1141, 1264
NspI RCATGY 1 cut(s) 1328
NspV TTCGAA 1 cut(s) 922
PaeI GCATGC 1 cut(s) 1328
PaeR7I CTCGAG 1 cut(s) 1194
PagI TCATGA 1 cut(s) 559
PceI AGGCCT 2 cut(s) 1045, 1289
PciSI GCTCTTC 2 cut(s) 79, 942
PcsI WCGNNNNNNNCGW 1 cut(s) 1207
PctI GAATGC 1 cut(s) 720
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 4 cut(s) 407, 772, 965, 1154
PflFI GACNNNGTC 1 cut(s) 1334
PkrI GCNGC 1 cut(s) 910
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 886
PshAI GACNNNNGTC 1 cut(s) 1115
PshBI ATTAAT 2 cut(s) 402, 507
Psp1406I AACGTT 1 cut(s) 1136
Psp5II RGGWCCY 1 cut(s) 886
Psp6I CCWGG 2 cut(s) 1085, 1145
PspGI CCWGG 2 cut(s) 1085, 1145
PspN4I GGNNCC 2 cut(s) 1095, 1182
PspPI GGNCC 5 cut(s) 449, 491, 886, 1093, 1231
PspPPI RGGWCCY 1 cut(s) 886
PstNI CAGNNNCTG 3 cut(s) 233, 329, 476
PsuI RGATCY 2 cut(s) 1166, 1349
PsyI GACNNNGTC 1 cut(s) 1334
RsaI GTAC 1 cut(s) 1385
RsaNI GTAC 1 cut(s) 1384
RseI CAYNNNNRTG 1 cut(s) 402
SapI GCTCTTC 2 cut(s) 79, 942
SaqAI TTAA 7 cut(s) 341, 402, 507, 600, 618, 1002, 1064
SatI GCNGC 1 cut(s) 909
Sau3AI GATC 5 cut(s) 103, 627, 898, 1166, 1349
Sau96I GGNCC 5 cut(s) 449, 491, 886, 1093, 1231
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 2 cut(s) 1087, 1147
SduI GDGCHC 2 cut(s) 349, 431
SexAI ACCWGGT 2 cut(s) 1085, 1145
Sfr274I CTCGAG 1 cut(s) 1194
SfuI TTCGAA 1 cut(s) 922
SinI GGWCC 4 cut(s) 449, 491, 886, 1093
SlaI CTCGAG 1 cut(s) 1194
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 3 cut(s) 353, 617, 1194
SmoI CTYRAG 3 cut(s) 353, 617, 1194
SphI GCATGC 1 cut(s) 1328
Sse9I AATT 7 cut(s) 212, 338, 417, 546, 563, 692, 918
SseBI AGGCCT 2 cut(s) 1045, 1289
SsiI CCGC 3 cut(s) 440, 1010, 1164
SspI AATATT 1 cut(s) 1225
StuI AGGCCT 2 cut(s) 1045, 1289
StyD4I CCNGG 2 cut(s) 1085, 1145
StyI CCWWGG 1 cut(s) 1214
TaaI ACNGT 6 cut(s) 10, 208, 598, 806, 832, 1377
TaiI ACGT 1 cut(s) 1139
TaqI TCGA 2 cut(s) 922, 1195
TasI AATT 7 cut(s) 212, 338, 417, 546, 563, 692, 918
TatI WGTACW 1 cut(s) 1383
TfiI GAWTC 4 cut(s) 407, 772, 965, 1154
Tru1I TTAA 7 cut(s) 341, 402, 507, 600, 618, 1002, 1064
Tru9I TTAA 7 cut(s) 341, 402, 507, 600, 618, 1002, 1064
TscAI CASTG 4 cut(s) 15, 493, 751, 835
TseFI GTSAC 4 cut(s) 826, 1108, 1141, 1264
TseI GCWGC 1 cut(s) 908
Tsp45I GTSAC 4 cut(s) 826, 1108, 1141, 1264
TspGWI ACGGA 1 cut(s) 1378
TspRI CASTG 4 cut(s) 15, 493, 751, 835
Tth111I GACNNNGTC 1 cut(s) 1334
Vha464I CTTAAG 1 cut(s) 617
VneI GTGCAC 1 cut(s) 345
VpaK11BI GGWCC 4 cut(s) 449, 491, 886, 1093
VspI ATTAAT 2 cut(s) 402, 507
XapI RAATTY 1 cut(s) 918
XceI RCATGY 1 cut(s) 1328
XhoI CTCGAG 1 cut(s) 1194
XmiI GTMKAC 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.