Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027368.1

Orthogroup ID

OG0003150

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1622

Gene Structure 1622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027368.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 485 bp

ttgcatgtggtggattttccatggaagcagtgtttgtggttgaggggaatgatgaagggaagtgtgaggagattggagttgagaaaagtagctcgtctttgtcttctccaaagcagatcaccgatcctgttgtctacaagctcgttcgggttgaaggtgatgggagattagtgccagcaacagatgatgaagtaatggaggttgaggattttcttgttgatgagcagatcgaattgcctgttgttatgagcacgggaactgtcgagtgcatttctaatgaatcttcatctgggaagcctcagaaagaaagctcagaaggtctgtcaccttcagagggtaaagaagctgatgcaaaactaagtgcacatcttgaggtattacgttggcaatttgctttctttagatatagatggatgagtattcttgtttatgctggtagatttgtaacggttgcagaagatagtgtgtttcttttgagtatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

160

Amino Acids

17.52

Weight (kDa)

4.37

Isoelectric Point (pI)

63.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17460 AT1G17460 AT1G17460 AT1G72650 AT1G72650
fragaria_vesca	FvH4_6g34560 FvH4_6g34560 FvH4_6g34560 FvH4_6g34560 FvH4_6g34560
malus_domestica	MD09G1184800.v1.1 MD17G1168700.v1.1
prunus_persica	Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1
pyrus_communis	pycom09g10240 pycom17g16720
rosa_chinensis	RchiOBHm_Chr2g0145091
rosa_laevigata	RLG00000020124
rosa_multiflora	Rmu_co8219288.1_g000001 Rmu_co8448595.1_g000001 Rmu_sc0027368.1_g000001
rosa_roxburghii	Rroxscaffold_2G00100880
rosa_rugosa	Rorug02G0390200 Rorug02G0390200 Rorug02G0390300 Rorug02G0390300 Rorug02G0390300 Rorug02G0390300
rosa_samantha	Rh2AG442900 Rh2BG453900 Rh2CG429900 Rh2DG463900
rosa_wichuraiana	Rw2G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AclWI	GGATC	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	4 cut(s)	92, 141, 311, 346
AluI	AGCT	4 cut(s)	92, 141, 311, 346
Alw21I	GWGCWC	2 cut(s)	253, 366
Alw44I	GTGCAC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	118
ApaLI	GTGCAC	1 cut(s)	362
AsuHPI	GGTGA	3 cut(s)	111, 169, 317
BaeGI	GKGCMC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	2 cut(s)	253, 366
BccI	CCATC	2 cut(s)	154, 404
BmsI	GCATC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	419
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	313, 326
BseRI	GAGGAG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	366
BsiHKAI	GWGCWC	2 cut(s)	253, 366
BslI	CCNNNNNNNGG	1 cut(s)	334
Bsp1286I	GDGCHC	2 cut(s)	253, 366
Bsp143I	GATC	3 cut(s)	116, 123, 227
Bsp19I	CCATGG	1 cut(s)	20
BspCNI	CTCAG	2 cut(s)	312, 325
BspPI	GGATC	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	3 cut(s)	116, 123, 227
BssT1I	CCWWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	261, 450
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	3 cut(s)	299, 312, 358
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	419
BstKTI	GATC	3 cut(s)	119, 126, 230
BstMBI	GATC	3 cut(s)	116, 123, 227
BstNSI	RCATGY	1 cut(s)	8
BstSLI	GKGCMC	1 cut(s)	366
BstV2I	GAAGAC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	419
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	176
CviAII	CATG	2 cut(s)	5, 21
CviJI	RGCY	5 cut(s)	92, 141, 297, 311, 346
CviKI_1	RGCY	5 cut(s)	92, 141, 297, 311, 346
DdeI	CTNAG	3 cut(s)	299, 312, 358
DpnI	GATC	3 cut(s)	118, 125, 229
DpnII	GATC	3 cut(s)	116, 123, 227
Eco130I	CCWWGG	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	2 cut(s)	8, 24
FaiI	YATR	7 cut(s)	6, 22, 247, 407, 431, 481, 483
FatI	CATG	2 cut(s)	4, 20
FblI	GTMKAC	1 cut(s)	134
FokI	GGATG	1 cut(s)	426
Hin1II	CATG	2 cut(s)	8, 24
HinfI	GANTC	1 cut(s)	280
HphI	GGTGA	3 cut(s)	111, 169, 317
Hpy166II	GTNNAC	2 cut(s)	135, 364
Hpy188I	TCNGA	3 cut(s)	302, 315, 333
Hpy188III	TCNNGA	1 cut(s)	370
Hpy8I	GTNNAC	2 cut(s)	135, 364
HpyAV	CCTTC	4 cut(s)	49, 148, 310, 338
HpyCH4III	ACNGT	2 cut(s)	261, 450
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	5 cut(s)	4, 269, 352, 364, 454
HpyF3I	CTNAG	3 cut(s)	299, 312, 358
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	2 cut(s)	8, 24
Kzo9I	GATC	3 cut(s)	116, 123, 227
LpnPI	CCDG	5 cut(s)	140, 188, 251, 275, 419
LweI	GCATC	1 cut(s)	339
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	2 cut(s)	323, 444
MalI	GATC	3 cut(s)	118, 125, 229
MboI	GATC	3 cut(s)	116, 123, 227
MboII	GAAGA	3 cut(s)	95, 275, 469
MhlI	GDGCHC	2 cut(s)	253, 366
MluCI	AATT	2 cut(s)	232, 388
MnlI	CCTC	7 cut(s)	36, 60, 192, 198, 308, 327, 366
NcoI	CCATGG	1 cut(s)	20
NdeII	GATC	3 cut(s)	116, 123, 227
NlaIII	CATG	2 cut(s)	8, 24
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	280
Sau3AI	GATC	3 cut(s)	116, 123, 227
SduI	GDGCHC	2 cut(s)	253, 366
SfaNI	GCATC	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	2 cut(s)	232, 388
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	2 cut(s)	261, 450
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	2 cut(s)	230, 263
TasI	AATT	2 cut(s)	232, 388
TfiI	GAWTC	1 cut(s)	280
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	4 cut(s)	68, 203, 275, 293
TspRI	CASTG	1 cut(s)	35
VneI	GTGCAC	1 cut(s)	362
XceI	RCATGY	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.