Rh2BG453900
MYB Family

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
64263274 .. 64268214
4941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG453900.1

Sequence Viewer

Length: 1818 bp
ATGGAAGCAGTGTTTGTGGTTGAGGGGAATGATGAAGGGAAGTGTGAGGAGATTGGAGTTGAGAAAAGTAGCTCGTCTTTGTCTTCTCCAAAGCAGATCACCGATCCTGTTGTCTACAAGCTCGTTCGGGTTGAAGGTGATGGGAGATTAGTGCCAGCAACAGATGATGAAGTAATGGAGGTTGAGGATTTTCTTGTTGATGAGCAGATCGAATTGCCTGTTGTTATGAGCACGGGAACTGTCGAGTGCATTTCTAATGAATCTTCATCTGGGAAGCCTCAGAAAGAAAGCTCAGAAGGTCTGTCACCTTCAGAGGGTAAAGAAGCTGATGCAAAACTAAGTGCACATCTTGAGGAAATTGCTCCTTCGTCATCACTGAGCTTAGATGTCAGCCACATTAATGAATCTGAGACAAAAGGGGAGTGCTCAAAACATCCAGATGGACCAATAGAAAGCGTATCATCAGCTTCTGCTGTCTGCACTAGTTCAAAGCGTGATTTTTATGCATCAAACAGGGAGATATGCCTGGACAACCTATCAATTAGAGAACTTCATGAATTATTTAGAGCAACCTTTGGGCGAGAAACTACTGTTAAGGACAAGCTCTGGCTTAAAAGGAGGATCGCGATGGGATTGACTAATTCTTGTGATGTTTCAACCACAACTTTCACTATTATAAATAAGAAATTGGTGAAGAATGGCAAAGACAATAGCTTGCAGAATGCTCATGATATGCACACTGAGGGTTCTGATGTTGGAGCAAAGAATCTTGGGTATGAAGATTCACCAAAAAGCCACAATAGCCAATTAGAAAATCATCAAGTTGTTTCAGCCAAGAGATCGGGAAGCCTTAGTGAAGAAGAATATGGCTGTGAGGATCATACCATGGATCAGAGAGCTGCCAAGAGAGTTCGGAAGCCCACTAAGCGATACATTGAAGAACTTTCTGAAGTGGAATCAAGAGATCATAGCCCAAAAGTGATTAGTTCCGCTAAAACTGCTGGACATGAAGAAACGTCTCCAACATGTTCTGCAAGGCCTCTTAGAAATGTCTCTACAAATGAGAGAACTATTGTCACTAGGTTGGATTCTCTTGGTGGATCTGGGGTTCAGGTTCCTTATGTTTCTCGGGTTCGAAGAAGCCGTCCAAGGAAAAATATTATGGCTCTTATGAATTTCAATCCAAGTGGAATGGGTGTGACAGCTAAACTGGTAAAAGAGACCCTTGCTGTGTGTACTTCTCTTCCAGAGAGTGAGTGTGCAGACAAAGTTTTGAAAGCCAGATCTGCTTCTGAACAGATTAAGCCACTGTTTGCTGCTGAACCAGAGAAAGACAAGCGGCGCTCTGTAATGAGCACATTCGAGCATGGGAAAAACTTAGGCCTAAAACAGACAGATTCATCTGAGGAGAATTCAGATGATAGTATAGCTGCAGTTCCCACAGTAAAAGGTGGGATGAGAAGGAAACATCATCGAGCTTGGACTCTTGTTGAAGTTATGAAATTAGTCGAGGGTGTCTCTAAGTGTGGCACTGGCAGATGGTCTGAGATCAAAAGGCTTTCATTTGCAACGTTTTCATATCGTACTTCTGTTGATCTCAAGGACAAGTGGAGGAACCTGCTGAAAGCTAGTTTTGCACAAACACCTCCTGATGATGGGTCGCGGAAACATGTCGCTGTGCCTATCCCAGCATCAATTTTGTTAAAAGTGAGAGAGCTTGCTGAGATGCACGCACAGGTACCTCCAAATCTAGGGGCGAGCAAGCTGACCGCCAATGTTACTCGAAGTGTGCATCAAACAAGATCAGGCTACTTGTAA

Protein Analysis

605

Amino Acids

66.44

Weight (kDa)

6.81

Isoelectric Point (pI)

58.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 492 - 541 3.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 677
Acc36I ACCTGC 1 cut(s) 1626
Acc65I GGTACC 1 cut(s) 1738
AccB1I GGYRCC 1 cut(s) 1738
AccI GTMKAC 1 cut(s) 114
AccII CGCG 2 cut(s) 626, 1663
AciI CCGC 4 cut(s) 990, 1339, 1663, 1770
AclI AACGTT 1 cut(s) 1571
AclWI GGATC 5 cut(s) 98, 629, 885, 897, 1108
AcsI RAATTY 2 cut(s) 1174, 1411
AcuI CTGAAG 2 cut(s) 294, 969
AfaI GTAC 3 cut(s) 1237, 1585, 1740
AfiI CCNNNNNNNGG 3 cut(s) 314, 1655, 1751
AflIII ACRYGT 2 cut(s) 1025, 1669
AgsI TTSAA 7 cut(s) 134, 489, 657, 938, 1180, 1276, 1493
AhlI ACTAGT 1 cut(s) 482
AjnI CCWGG 1 cut(s) 525
AloI GAACNNNNNNTCC 2 cut(s) 1092, 1124
Alw21I GWGCWC 4 cut(s) 233, 346, 428, 1358
Alw26I GTCTC 5 cut(s) 404, 1023, 1057, 1214, 1522
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 5 cut(s) 98, 629, 885, 897, 1108
AlwNI CAGNNNCTG 1 cut(s) 470
Ama87I CYCGRG 1 cut(s) 1128
AoxI GGCC 2 cut(s) 1037, 1381
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 3 cut(s) 899, 1316, 1430
ApoI RAATTY 2 cut(s) 1174, 1411
ArsI GACNNNNNNTTYG 2 cut(s) 1129, 1161
AseI ATTAAT 1 cut(s) 399
Asp718I GGTACC 1 cut(s) 1738
AspLEI GCGC 1 cut(s) 1344
AspS9I GGNCC 1 cut(s) 443
AsuHPI GGTGA 5 cut(s) 91, 149, 297, 703, 777
AsuII TTCGAA 1 cut(s) 1135
AvaI CYCGRG 1 cut(s) 1128
AvaII GGWCC 1 cut(s) 443
BaeGI GKGCMC 1 cut(s) 346
BanI GGYRCC 1 cut(s) 1738
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 4 cut(s) 233, 346, 428, 1358
BbvI GCAGC 3 cut(s) 886, 1303, 1417
BccI CCATC 5 cut(s) 134, 434, 622, 1533, 1649
BceAI ACGGC 1 cut(s) 1128
BciT130I CCWGG 1 cut(s) 527
BcoDI GTCTC 5 cut(s) 404, 1023, 1057, 1214, 1522
BcuI ACTAGT 1 cut(s) 482
BfaI CTAG 4 cut(s) 483, 1080, 1629, 1751
BfmI CTRYAG 1 cut(s) 1431
BfoI RGCGCY 1 cut(s) 1345
BfuAI ACCTGC 1 cut(s) 1626
BglII AGATCT 1 cut(s) 1283
BisI GCNGC 4 cut(s) 900, 1317, 1340, 1431
BlsI GCNGC 4 cut(s) 901, 1318, 1341, 1432
Bme1390I CCNGG 1 cut(s) 527
Bme18I GGWCC 1 cut(s) 443
BmeT110I CYCGRG 1 cut(s) 1128
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 3 cut(s) 1116, 1616, 1740
BmrFI CCNGG 1 cut(s) 527
BmsI GCATC 5 cut(s) 319, 515, 1700, 1716, 1801
BpiI GAAGAC 1 cut(s) 75
BplI GAGNNNNNCTC 2 cut(s) 1502, 1534
Bpu14I TTCGAA 1 cut(s) 1135
BpuEI CTTGAG 2 cut(s) 371, 1583
BsaI GGTCTC 1 cut(s) 1214
BsaJI CCNNGG 2 cut(s) 885, 1148
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 1655, 1751
Bse1I ACTGG 2 cut(s) 1215, 1537
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 2 cut(s) 885, 1148
BseGI GGATG 2 cut(s) 433, 1461
BseLI CCNNNNNNNGG 3 cut(s) 314, 1655, 1751
BseMII CTCAG 8 cut(s) 293, 306, 368, 399, 732, 1395, 1536, 1713
BseNI ACTGG 2 cut(s) 1215, 1537
BseRI GAGGAG 2 cut(s) 62, 1421
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 3 cut(s) 886, 1303, 1417
BseYI CCCAGC 1 cut(s) 1687
BsgI GTGCAG 2 cut(s) 463, 1281
Bsh1236I CGCG 2 cut(s) 626, 1663
BshFI GGCC 2 cut(s) 1039, 1383
BshNI GGYRCC 1 cut(s) 1738
BsiHKAI GWGCWC 4 cut(s) 233, 346, 428, 1358
BsiHKCI CYCGRG 1 cut(s) 1128
BslI CCNNNNNNNGG 3 cut(s) 314, 1655, 1751
BsmAI GTCTC 5 cut(s) 404, 1023, 1057, 1214, 1522
BsmBI CGTCTC 1 cut(s) 1023
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 2 cut(s) 1039, 1383
Bso31I GGTCTC 1 cut(s) 1214
BsoBI CYCGRG 1 cut(s) 1128
Bsp119I TTCGAA 1 cut(s) 1135
Bsp1286I GDGCHC 4 cut(s) 233, 346, 428, 1358
Bsp19I CCATGG 1 cut(s) 885
Bsp68I TCGCGA 1 cut(s) 626
BspACI CCGC 4 cut(s) 990, 1339, 1663, 1770
BspANI GGCC 2 cut(s) 1039, 1383
BspCNI CTCAG 8 cut(s) 292, 305, 369, 400, 733, 1396, 1537, 1714
BspFNI CGCG 2 cut(s) 626, 1663
BspHI TCATGA 2 cut(s) 553, 727
BspLI GGNNCC 3 cut(s) 1116, 1616, 1740
BspMAI CTGCAG 1 cut(s) 1435
BspMI ACCTGC 1 cut(s) 1626
BspPI GGATC 5 cut(s) 98, 629, 885, 897, 1108
BspT104I TTCGAA 1 cut(s) 1135
BspT107I GGYRCC 1 cut(s) 1738
BspTNI GGTCTC 1 cut(s) 1214
BsrI ACTGG 2 cut(s) 1215, 1537
BssECI CCNNGG 2 cut(s) 885, 1148
BssT1I CCWWGG 2 cut(s) 885, 1148
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 4 cut(s) 241, 592, 1311, 1444
Bst6I CTCTTC 1 cut(s) 1248
BstBI TTCGAA 1 cut(s) 1135
BstC8I GCNNGC 6 cut(s) 156, 716, 1719, 1731, 1759, 1763
BstDSI CCRYGG 1 cut(s) 885
BstF5I GGATG 2 cut(s) 433, 1461
BstFNI CGCG 2 cut(s) 626, 1663
BstH2I RGCGCY 1 cut(s) 1345
BstHHI GCGC 1 cut(s) 1344
BstMAI GTCTC 5 cut(s) 404, 1023, 1057, 1214, 1522
BstMWI GCNNNNNNNGC 5 cut(s) 801, 925, 998, 1286, 1634
BstNI CCWGG 1 cut(s) 527
BstNSI RCATGY 2 cut(s) 1029, 1673
BstSCI CCNGG 1 cut(s) 525
BstSFI CTRYAG 1 cut(s) 1431
BstSLI GKGCMC 1 cut(s) 346
BstUI CGCG 2 cut(s) 626, 1663
BstV1I GCAGC 3 cut(s) 886, 1303, 1417
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 2 cut(s) 1100, 1283
BstYI RGATCY 2 cut(s) 1100, 1283
BsuRI GGCC 2 cut(s) 1039, 1383
BtgI CCRYGG 1 cut(s) 885
BtgZI GCGATG 1 cut(s) 641
BtsCI GGATG 2 cut(s) 433, 1461
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 5 cut(s) 15, 374, 738, 1307, 1530
BtuMI TCGCGA 1 cut(s) 626
BveI ACCTGC 1 cut(s) 1626
Cac8I GCNNGC 6 cut(s) 156, 716, 1719, 1731, 1759, 1763
CaiI CAGNNNCTG 1 cut(s) 470
CciI TCATGA 2 cut(s) 553, 727
CfoI GCGC 1 cut(s) 1344
Cfr13I GGNCC 1 cut(s) 443
Csp6I GTAC 3 cut(s) 1236, 1584, 1739
CspCI CAANNNNNGTGG 2 cut(s) 1168, 1203
CviAII CATG 7 cut(s) 554, 728, 886, 1007, 1026, 1367, 1670
CviQI GTAC 3 cut(s) 1236, 1584, 1739
Eam1104I CTCTTC 1 cut(s) 1248
EarI CTCTTC 1 cut(s) 1248
Eco130I CCWWGG 2 cut(s) 885, 1148
Eco147I AGGCCT 2 cut(s) 1039, 1383
Eco31I GGTCTC 1 cut(s) 1214
Eco47I GGWCC 1 cut(s) 443
Eco57I CTGAAG 2 cut(s) 294, 969
Eco88I CYCGRG 1 cut(s) 1128
EcoRI GAATTC 1 cut(s) 1411
EcoRII CCWGG 1 cut(s) 525
EcoT14I CCWWGG 2 cut(s) 885, 1148
EcoT22I ATGCAT 1 cut(s) 508
ErhI CCWWGG 2 cut(s) 885, 1148
Esp3I CGTCTC 1 cut(s) 1023
FaeI CATG 7 cut(s) 557, 731, 889, 1010, 1029, 1370, 1673
FalI AAGNNNNNCTT 2 cut(s) 1209, 1241
FatI CATG 7 cut(s) 553, 727, 885, 1006, 1025, 1366, 1669
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 4 cut(s) 900, 1317, 1340, 1431
FokI GGATG 2 cut(s) 420, 1468
Fsp4HI GCNGC 4 cut(s) 900, 1317, 1340, 1431
FspBI CTAG 4 cut(s) 483, 1080, 1629, 1751
GlaI GCGC 1 cut(s) 1343
GluI GCNGC 4 cut(s) 900, 1317, 1340, 1431
GsaI CCCAGC 1 cut(s) 1691
HaeII RGCGCY 1 cut(s) 1345
HaeIII GGCC 2 cut(s) 1039, 1383
HhaI GCGC 1 cut(s) 1344
Hin1II CATG 7 cut(s) 557, 731, 889, 1010, 1029, 1370, 1673
Hin6I GCGC 1 cut(s) 1342
HinP1I GCGC 1 cut(s) 1342
HinfI GANTC 8 cut(s) 260, 404, 766, 782, 956, 1088, 1397, 1483
HphI GGTGA 5 cut(s) 91, 149, 297, 703, 777
Hpy166II GTNNAC 3 cut(s) 115, 344, 1236
Hpy188III TCNNGA 9 cut(s) 350, 437, 554, 625, 728, 843, 960, 1247, 1649
Hpy8I GTNNAC 3 cut(s) 115, 344, 1236
HpyAV CCTTC 6 cut(s) 29, 128, 290, 318, 375, 1455
HpyCH4III ACNGT 4 cut(s) 241, 592, 1311, 1444
HpyCH4IV ACGT 2 cut(s) 1016, 1571
HpyF10VI GCNNNNNNNGC 5 cut(s) 801, 925, 998, 1286, 1634
HpySE526I ACGT 2 cut(s) 1016, 1571
Hsp92II CATG 7 cut(s) 557, 731, 889, 1010, 1029, 1370, 1673
HspAI GCGC 1 cut(s) 1342
KpnI GGTACC 1 cut(s) 1742
LmnI GCTCC 2 cut(s) 367, 758
Lsp1109I GCAGC 3 cut(s) 886, 1303, 1417
LweI GCATC 5 cut(s) 319, 515, 1700, 1716, 1801
MaeI CTAG 4 cut(s) 483, 1080, 1629, 1751
MaeII ACGT 2 cut(s) 1016, 1571
MaeIII GTNAC 4 cut(s) 303, 1075, 1198, 1777
MflI RGATCY 2 cut(s) 1100, 1283
MhlI GDGCHC 4 cut(s) 233, 346, 428, 1358
MlyI GAGTC 1 cut(s) 1477
MmeI TCCRAC 3 cut(s) 736, 1046, 1065
Mph1103I ATGCAT 1 cut(s) 508
MseI TTAA 5 cut(s) 399, 594, 612, 1302, 1703
MslI CAYNNNNRTG 2 cut(s) 399, 438
MspR9I CCNGG 1 cut(s) 527
Mva1269I GAATGC 1 cut(s) 727
MvaI CCWGG 1 cut(s) 527
MvnI CGCG 2 cut(s) 626, 1663
MwoI GCNNNNNNNGC 5 cut(s) 801, 925, 998, 1286, 1634
NcoI CCATGG 1 cut(s) 885
NlaIII CATG 7 cut(s) 557, 731, 889, 1010, 1029, 1370, 1673
NlaIV GGNNCC 3 cut(s) 1116, 1616, 1740
NmuCI GTSAC 3 cut(s) 303, 1075, 1198
NruI TCGCGA 1 cut(s) 626
NsiI ATGCAT 1 cut(s) 508
NspI RCATGY 2 cut(s) 1029, 1673
NspV TTCGAA 1 cut(s) 1135
PagI TCATGA 2 cut(s) 553, 727
PceI AGGCCT 2 cut(s) 1039, 1383
PciI ACATGT 2 cut(s) 1025, 1669
PcsI WCGNNNNNNNCGW 1 cut(s) 1141
PctI GAATGC 1 cut(s) 727
PfeI GAWTC 7 cut(s) 260, 404, 766, 782, 956, 1088, 1397
PkrI GCNGC 4 cut(s) 901, 1318, 1341, 1432
PleI GAGTC 1 cut(s) 1477
PpsI GAGTC 1 cut(s) 1477
PscI ACATGT 2 cut(s) 1025, 1669
PshBI ATTAAT 1 cut(s) 399
PsiI TTATAA 1 cut(s) 677
Psp1406I AACGTT 1 cut(s) 1571
Psp6I CCWGG 1 cut(s) 525
PspFI CCCAGC 1 cut(s) 1687
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 3 cut(s) 1116, 1616, 1740
PspPI GGNCC 1 cut(s) 443
PstI CTGCAG 1 cut(s) 1435
PstNI CAGNNNCTG 1 cut(s) 470
PsuI RGATCY 2 cut(s) 1100, 1283
RruI TCGCGA 1 cut(s) 626
RsaI GTAC 3 cut(s) 1237, 1585, 1740
RsaNI GTAC 3 cut(s) 1236, 1584, 1739
RseI CAYNNNNRTG 2 cut(s) 399, 438
SaqAI TTAA 5 cut(s) 399, 594, 612, 1302, 1703
SatI GCNGC 4 cut(s) 900, 1317, 1340, 1431
Sau96I GGNCC 1 cut(s) 443
SchI GAGTC 1 cut(s) 1477
ScrFI CCNGG 1 cut(s) 527
SduI GDGCHC 4 cut(s) 233, 346, 428, 1358
SfaNI GCATC 5 cut(s) 319, 515, 1700, 1716, 1801
SfcI CTRYAG 1 cut(s) 1431
SfuI TTCGAA 1 cut(s) 1135
SinI GGWCC 1 cut(s) 443
SmiMI CAYNNNNRTG 2 cut(s) 399, 438
SmlI CTYRAG 2 cut(s) 350, 1598
SmoI CTYRAG 2 cut(s) 350, 1598
SpeI ACTAGT 1 cut(s) 482
SseBI AGGCCT 2 cut(s) 1039, 1383
SsiI CCGC 4 cut(s) 990, 1339, 1663, 1770
SspI AATATT 1 cut(s) 1159
SspMI CTAG 4 cut(s) 483, 1080, 1629, 1751
StuI AGGCCT 2 cut(s) 1039, 1383
StyD4I CCNGG 1 cut(s) 525
StyI CCWWGG 2 cut(s) 885, 1148
TaaI ACNGT 4 cut(s) 241, 592, 1311, 1444
TaiI ACGT 2 cut(s) 1019, 1574
TaqI TCGA 7 cut(s) 210, 243, 1135, 1362, 1474, 1509, 1783
TatI WGTACW 1 cut(s) 1235
TauI GCSGC 1 cut(s) 1342
TfiI GAWTC 7 cut(s) 260, 404, 766, 782, 956, 1088, 1397
Tru1I TTAA 5 cut(s) 399, 594, 612, 1302, 1703
Tru9I TTAA 5 cut(s) 399, 594, 612, 1302, 1703
TscAI CASTG 5 cut(s) 15, 381, 745, 1314, 1537
TseFI GTSAC 3 cut(s) 303, 1075, 1198
TseI GCWGC 3 cut(s) 899, 1316, 1430
Tsp45I GTSAC 3 cut(s) 303, 1075, 1198
TspRI CASTG 5 cut(s) 15, 381, 745, 1314, 1537
VneI GTGCAC 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 443
VspI ATTAAT 1 cut(s) 399
XapI RAATTY 2 cut(s) 1174, 1411
XceI RCATGY 2 cut(s) 1029, 1673
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 4 cut(s) 483, 1080, 1629, 1751
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.