Rw2G036200
MYB Family

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
59511221 .. 59516827
5607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G036200.1

Sequence Viewer

Length: 1764 bp
ATGGAAGCAGTGTTTGTGGTTGAGGGGAATGATGAAGGGAAGTGTGAGGAGATTGGAGTTGAGAAAAGTAGCTCGTCTGTGTCTTCTCCAAAGCAGATCACCGATCCTGTTGTCTACAAGCTCGTTCGGCAGGTTGAAGGTGATGGGAGATTAGTGCCAGCAACAGATGATGAAGTAATGGAGGTTGAGGATTTTCTTGTTGATGAGCAGATCGAATTGCCTGTTGTTATGAGCACGGGAACTGTCGAGTGCATTTCTAATGAATCTTCATCTGGGAAGCCTCAGAAAGAAAGCTCAGAAGGTCTGTCACCTTCAGAGGGTAAAGAAGCTGATGCAAAACTAAGTGCACATCTTGAGGAAATTGCTCCTTCGTCATCACTGAGCTTAGATGTCAGCCACATTAATGAATCTGAGACAAAAGGGGAGTGCTCAAAACATCCAGATGGACCAATAGAAAGCAGGGAGATATGCCTGGACAACCTATCAATTAGAGAACTTCATGAATTATTTAGAGCAACCTTTGGGCGAGAAACTACTGTTAAGGACAAGCTCTGGCTTAAAAGGAGGATCGCGATGGGATTGACTAATTCTTGTGATGTTTCAACCACAACTTTCACTATTATAAATAAGAAATTGGTGAAGAATGACAAAGACAATAGCTTGCAGAATGCTCATGATATGCACACTGAGAGTTCTGATGTTGGAGCAAAGAATCTTGGGTATGAAGATTCACCAAAAAGCCACAATAGCCAATTAGAAAATCATCAAGTTGTTTCAGCCAAGAGATCGGGAAGCCTTAGTGAAGAAGAATATGGCTGTGAGGATCATACCATGGATCAGAGAGCTGCCAAGAGAGTTCGGAAGCCCACTAAGCGATACATTGAAGAACTTTCTGAAGTGGAATCAAGAGATCATAGCCCAAAAGTGATTAGTTCCGCTAAAACTGCTGGACATGAAGAAACGTCTCCAACATGTTCTGCAAGGCCTCTTAGAAATGTCTCTACAAATGAGAGAACTATTGTCACTAGGTTGGATTCTCTTGGTGGATCTGGGGTTCAGGTTCCTTATGTTTCTCGGGTTCGAAGAAGCCGTCCAAGGAAAAATATTATGGCTCTTATGAATTTCAATCCAAGTGGAATGGGTGTGACAGCTAAACTGGTAAAAGAGACCCTTGCTGTGTGTACTTCTCTTCCAGAGAGTGAGTGTGCAGACAAAGTTTTGAAAGCCAGATCTGCTTCTGAACAGATTAAGCCACTGTTTGCTGCTGAACCAGAGAAAGACAAGCGGCGCTCTGTAATGAGCACATTCGAGCATGGGAAAAACTTAGGCCTAAAACAGACAGATTCATCTGAGGAGAATTCAGATGATAGTATAGCTGCAGTTCCCACAGTAAAAGGTGGGATGAGAAGGAAACATCATCGAGCTTGGACTCTTGTTGAAGTTATGAAATTAGTCGAGGGTGTCTCTAAGTGTGGCACTGGCAGATGGTCTGAGATCAAAAGGCTTTCATTTGCAACGTTTTCATATCGTACTTCTGTTGATCTCAAGGACAAGTGGAGGAACCTGCTGAAAGCTAGTTTTGCACAAACACCTCCTGATGATGGGTCGCGGAAACATGTCGCTGTGCCTATCCCAGCATCAATTTTGTTAAAAGTGAGAGAGCTTGCTGAGATGCACGCACAGGTACCTCCAAATCTAGGGGCGAGCAAGCTGACCGCCAATGTTACTCGAAGTGTGCATCAAACAAGATCAGGCTACTTGTAA

Protein Analysis

587

Amino Acids

64.68

Weight (kDa)

6.53

Isoelectric Point (pI)

58.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 474 - 523 3.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 623
Acc36I ACCTGC 2 cut(s) 121, 1572
Acc65I GGTACC 1 cut(s) 1684
AccB1I GGYRCC 1 cut(s) 1684
AccI GTMKAC 1 cut(s) 114
AccII CGCG 2 cut(s) 572, 1609
AciI CCGC 4 cut(s) 936, 1285, 1609, 1716
AclI AACGTT 1 cut(s) 1517
AclWI GGATC 5 cut(s) 98, 575, 831, 843, 1054
AcsI RAATTY 2 cut(s) 1120, 1357
AcuI CTGAAG 2 cut(s) 297, 915
AfaI GTAC 3 cut(s) 1183, 1531, 1686
AfiI CCNNNNNNNGG 3 cut(s) 317, 1601, 1697
AflIII ACRYGT 2 cut(s) 971, 1615
AgsI TTSAA 6 cut(s) 137, 603, 884, 1126, 1222, 1439
AjnI CCWGG 1 cut(s) 471
AloI GAACNNNNNNTCC 2 cut(s) 1038, 1070
Alw21I GWGCWC 4 cut(s) 236, 349, 431, 1304
Alw26I GTCTC 5 cut(s) 407, 969, 1003, 1160, 1468
Alw44I GTGCAC 1 cut(s) 345
AlwI GGATC 5 cut(s) 98, 575, 831, 843, 1054
Ama87I CYCGRG 1 cut(s) 1074
AoxI GGCC 2 cut(s) 983, 1327
ApaLI GTGCAC 1 cut(s) 345
ApeKI GCWGC 3 cut(s) 845, 1262, 1376
ApoI RAATTY 2 cut(s) 1120, 1357
ArsI GACNNNNNNTTYG 2 cut(s) 1075, 1107
AseI ATTAAT 1 cut(s) 402
Asp718I GGTACC 1 cut(s) 1684
AspLEI GCGC 1 cut(s) 1290
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 5 cut(s) 91, 152, 300, 649, 723
AsuII TTCGAA 1 cut(s) 1081
AvaI CYCGRG 1 cut(s) 1074
AvaII GGWCC 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 1684
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 4 cut(s) 236, 349, 431, 1304
BbvI GCAGC 3 cut(s) 832, 1249, 1363
BccI CCATC 5 cut(s) 137, 437, 568, 1479, 1595
BceAI ACGGC 1 cut(s) 1074
BciT130I CCWGG 1 cut(s) 473
BcoDI GTCTC 5 cut(s) 407, 969, 1003, 1160, 1468
BfaI CTAG 3 cut(s) 1026, 1575, 1697
BfmI CTRYAG 1 cut(s) 1377
BfoI RGCGCY 1 cut(s) 1291
BfuAI ACCTGC 2 cut(s) 121, 1572
BglII AGATCT 1 cut(s) 1229
BisI GCNGC 4 cut(s) 846, 1263, 1286, 1377
BlsI GCNGC 4 cut(s) 847, 1264, 1287, 1378
Bme1390I CCNGG 1 cut(s) 473
Bme18I GGWCC 1 cut(s) 446
BmeT110I CYCGRG 1 cut(s) 1074
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 3 cut(s) 1062, 1562, 1686
BmrFI CCNGG 1 cut(s) 473
BmsI GCATC 4 cut(s) 322, 1646, 1662, 1747
BpiI GAAGAC 1 cut(s) 75
BplI GAGNNNNNCTC 2 cut(s) 1448, 1480
Bpu14I TTCGAA 1 cut(s) 1081
BpuEI CTTGAG 2 cut(s) 374, 1529
BsaI GGTCTC 1 cut(s) 1160
BsaJI CCNNGG 2 cut(s) 831, 1094
Bsc4I CCNNNNNNNGG 3 cut(s) 317, 1601, 1697
Bse1I ACTGG 2 cut(s) 1161, 1483
BseBI CCWGG 1 cut(s) 473
BseDI CCNNGG 2 cut(s) 831, 1094
BseGI GGATG 2 cut(s) 436, 1407
BseLI CCNNNNNNNGG 3 cut(s) 317, 1601, 1697
BseMII CTCAG 8 cut(s) 296, 309, 371, 402, 678, 1341, 1482, 1659
BseNI ACTGG 2 cut(s) 1161, 1483
BseRI GAGGAG 2 cut(s) 62, 1367
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 3 cut(s) 832, 1249, 1363
BseYI CCCAGC 1 cut(s) 1633
BsgI GTGCAG 1 cut(s) 1227
Bsh1236I CGCG 2 cut(s) 572, 1609
BshFI GGCC 2 cut(s) 985, 1329
BshNI GGYRCC 1 cut(s) 1684
BsiHKAI GWGCWC 4 cut(s) 236, 349, 431, 1304
BsiHKCI CYCGRG 1 cut(s) 1074
BslI CCNNNNNNNGG 3 cut(s) 317, 1601, 1697
BsmAI GTCTC 5 cut(s) 407, 969, 1003, 1160, 1468
BsmBI CGTCTC 1 cut(s) 969
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 2 cut(s) 985, 1329
Bso31I GGTCTC 1 cut(s) 1160
BsoBI CYCGRG 1 cut(s) 1074
Bsp119I TTCGAA 1 cut(s) 1081
Bsp1286I GDGCHC 4 cut(s) 236, 349, 431, 1304
Bsp19I CCATGG 1 cut(s) 831
Bsp68I TCGCGA 1 cut(s) 572
BspACI CCGC 4 cut(s) 936, 1285, 1609, 1716
BspANI GGCC 2 cut(s) 985, 1329
BspCNI CTCAG 8 cut(s) 295, 308, 372, 403, 679, 1342, 1483, 1660
BspFNI CGCG 2 cut(s) 572, 1609
BspHI TCATGA 2 cut(s) 499, 673
BspLI GGNNCC 3 cut(s) 1062, 1562, 1686
BspMAI CTGCAG 1 cut(s) 1381
BspMI ACCTGC 2 cut(s) 121, 1572
BspPI GGATC 5 cut(s) 98, 575, 831, 843, 1054
BspT104I TTCGAA 1 cut(s) 1081
BspT107I GGYRCC 1 cut(s) 1684
BspTNI GGTCTC 1 cut(s) 1160
BsrI ACTGG 2 cut(s) 1161, 1483
BssECI CCNNGG 2 cut(s) 831, 1094
BssT1I CCWWGG 2 cut(s) 831, 1094
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 4 cut(s) 244, 538, 1257, 1390
Bst6I CTCTTC 1 cut(s) 1194
BstBI TTCGAA 1 cut(s) 1081
BstC8I GCNNGC 6 cut(s) 159, 662, 1665, 1677, 1705, 1709
BstDSI CCRYGG 1 cut(s) 831
BstF5I GGATG 2 cut(s) 436, 1407
BstFNI CGCG 2 cut(s) 572, 1609
BstH2I RGCGCY 1 cut(s) 1291
BstHHI GCGC 1 cut(s) 1290
BstMAI GTCTC 5 cut(s) 407, 969, 1003, 1160, 1468
BstMWI GCNNNNNNNGC 6 cut(s) 127, 747, 871, 944, 1232, 1580
BstNI CCWGG 1 cut(s) 473
BstNSI RCATGY 2 cut(s) 975, 1619
BstSCI CCNGG 1 cut(s) 471
BstSFI CTRYAG 1 cut(s) 1377
BstSLI GKGCMC 1 cut(s) 349
BstUI CGCG 2 cut(s) 572, 1609
BstV1I GCAGC 3 cut(s) 832, 1249, 1363
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 2 cut(s) 1046, 1229
BstYI RGATCY 2 cut(s) 1046, 1229
BsuRI GGCC 2 cut(s) 985, 1329
BtgI CCRYGG 1 cut(s) 831
BtgZI GCGATG 1 cut(s) 587
BtsCI GGATG 2 cut(s) 436, 1407
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 5 cut(s) 15, 377, 684, 1253, 1476
BtuMI TCGCGA 1 cut(s) 572
BveI ACCTGC 2 cut(s) 121, 1572
Cac8I GCNNGC 6 cut(s) 159, 662, 1665, 1677, 1705, 1709
CciI TCATGA 2 cut(s) 499, 673
CfoI GCGC 1 cut(s) 1290
Cfr13I GGNCC 1 cut(s) 446
Csp6I GTAC 3 cut(s) 1182, 1530, 1685
CspCI CAANNNNNGTGG 2 cut(s) 1114, 1149
CviAII CATG 7 cut(s) 500, 674, 832, 953, 972, 1313, 1616
CviQI GTAC 3 cut(s) 1182, 1530, 1685
Eam1104I CTCTTC 1 cut(s) 1194
EarI CTCTTC 1 cut(s) 1194
Eco130I CCWWGG 2 cut(s) 831, 1094
Eco147I AGGCCT 2 cut(s) 985, 1329
Eco31I GGTCTC 1 cut(s) 1160
Eco47I GGWCC 1 cut(s) 446
Eco57I CTGAAG 2 cut(s) 297, 915
Eco88I CYCGRG 1 cut(s) 1074
EcoRI GAATTC 1 cut(s) 1357
EcoRII CCWGG 1 cut(s) 471
EcoT14I CCWWGG 2 cut(s) 831, 1094
ErhI CCWWGG 2 cut(s) 831, 1094
Esp3I CGTCTC 1 cut(s) 969
FaeI CATG 7 cut(s) 503, 677, 835, 956, 975, 1316, 1619
FalI AAGNNNNNCTT 2 cut(s) 1155, 1187
FatI CATG 7 cut(s) 499, 673, 831, 952, 971, 1312, 1615
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 4 cut(s) 846, 1263, 1286, 1377
FokI GGATG 2 cut(s) 423, 1414
Fsp4HI GCNGC 4 cut(s) 846, 1263, 1286, 1377
FspBI CTAG 3 cut(s) 1026, 1575, 1697
GlaI GCGC 1 cut(s) 1289
GluI GCNGC 4 cut(s) 846, 1263, 1286, 1377
GsaI CCCAGC 1 cut(s) 1637
HaeII RGCGCY 1 cut(s) 1291
HaeIII GGCC 2 cut(s) 985, 1329
HhaI GCGC 1 cut(s) 1290
Hin1II CATG 7 cut(s) 503, 677, 835, 956, 975, 1316, 1619
Hin6I GCGC 1 cut(s) 1288
HinP1I GCGC 1 cut(s) 1288
HinfI GANTC 8 cut(s) 263, 407, 712, 728, 902, 1034, 1343, 1429
HphI GGTGA 5 cut(s) 91, 152, 300, 649, 723
Hpy166II GTNNAC 3 cut(s) 115, 347, 1182
Hpy188III TCNNGA 9 cut(s) 353, 440, 500, 571, 674, 789, 906, 1193, 1595
Hpy8I GTNNAC 3 cut(s) 115, 347, 1182
HpyAV CCTTC 6 cut(s) 29, 131, 293, 321, 378, 1401
HpyCH4III ACNGT 4 cut(s) 244, 538, 1257, 1390
HpyCH4IV ACGT 2 cut(s) 962, 1517
HpyF10VI GCNNNNNNNGC 6 cut(s) 127, 747, 871, 944, 1232, 1580
HpySE526I ACGT 2 cut(s) 962, 1517
Hsp92II CATG 7 cut(s) 503, 677, 835, 956, 975, 1316, 1619
HspAI GCGC 1 cut(s) 1288
KpnI GGTACC 1 cut(s) 1688
LmnI GCTCC 2 cut(s) 370, 704
Lsp1109I GCAGC 3 cut(s) 832, 1249, 1363
LweI GCATC 4 cut(s) 322, 1646, 1662, 1747
MaeI CTAG 3 cut(s) 1026, 1575, 1697
MaeII ACGT 2 cut(s) 962, 1517
MaeIII GTNAC 4 cut(s) 306, 1021, 1144, 1723
MflI RGATCY 2 cut(s) 1046, 1229
MhlI GDGCHC 4 cut(s) 236, 349, 431, 1304
MlyI GAGTC 1 cut(s) 1423
MmeI TCCRAC 3 cut(s) 682, 992, 1011
MseI TTAA 5 cut(s) 402, 540, 558, 1248, 1649
MslI CAYNNNNRTG 2 cut(s) 402, 441
MspR9I CCNGG 1 cut(s) 473
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 1 cut(s) 473
MvnI CGCG 2 cut(s) 572, 1609
MwoI GCNNNNNNNGC 6 cut(s) 127, 747, 871, 944, 1232, 1580
NcoI CCATGG 1 cut(s) 831
NlaIII CATG 7 cut(s) 503, 677, 835, 956, 975, 1316, 1619
NlaIV GGNNCC 3 cut(s) 1062, 1562, 1686
NmuCI GTSAC 3 cut(s) 306, 1021, 1144
NruI TCGCGA 1 cut(s) 572
NspI RCATGY 2 cut(s) 975, 1619
NspV TTCGAA 1 cut(s) 1081
PagI TCATGA 2 cut(s) 499, 673
PceI AGGCCT 2 cut(s) 985, 1329
PciI ACATGT 2 cut(s) 971, 1615
PcsI WCGNNNNNNNCGW 1 cut(s) 1087
PctI GAATGC 1 cut(s) 673
PfeI GAWTC 7 cut(s) 263, 407, 712, 728, 902, 1034, 1343
PkrI GCNGC 4 cut(s) 847, 1264, 1287, 1378
PleI GAGTC 1 cut(s) 1423
PpsI GAGTC 1 cut(s) 1423
PscI ACATGT 2 cut(s) 971, 1615
PshBI ATTAAT 1 cut(s) 402
PsiI TTATAA 1 cut(s) 623
Psp1406I AACGTT 1 cut(s) 1517
Psp6I CCWGG 1 cut(s) 471
PspFI CCCAGC 1 cut(s) 1633
PspGI CCWGG 1 cut(s) 471
PspN4I GGNNCC 3 cut(s) 1062, 1562, 1686
PspPI GGNCC 1 cut(s) 446
PstI CTGCAG 1 cut(s) 1381
PsuI RGATCY 2 cut(s) 1046, 1229
RruI TCGCGA 1 cut(s) 572
RsaI GTAC 3 cut(s) 1183, 1531, 1686
RsaNI GTAC 3 cut(s) 1182, 1530, 1685
RseI CAYNNNNRTG 2 cut(s) 402, 441
SaqAI TTAA 5 cut(s) 402, 540, 558, 1248, 1649
SatI GCNGC 4 cut(s) 846, 1263, 1286, 1377
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 1 cut(s) 1423
ScrFI CCNGG 1 cut(s) 473
SduI GDGCHC 4 cut(s) 236, 349, 431, 1304
SfaNI GCATC 4 cut(s) 322, 1646, 1662, 1747
SfcI CTRYAG 1 cut(s) 1377
SfuI TTCGAA 1 cut(s) 1081
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 2 cut(s) 402, 441
SmlI CTYRAG 2 cut(s) 353, 1544
SmoI CTYRAG 2 cut(s) 353, 1544
SseBI AGGCCT 2 cut(s) 985, 1329
SsiI CCGC 4 cut(s) 936, 1285, 1609, 1716
SspI AATATT 1 cut(s) 1105
SspMI CTAG 3 cut(s) 1026, 1575, 1697
StuI AGGCCT 2 cut(s) 985, 1329
StyD4I CCNGG 1 cut(s) 471
StyI CCWWGG 2 cut(s) 831, 1094
TaaI ACNGT 4 cut(s) 244, 538, 1257, 1390
TaiI ACGT 2 cut(s) 965, 1520
TaqI TCGA 7 cut(s) 213, 246, 1081, 1308, 1420, 1455, 1729
TatI WGTACW 1 cut(s) 1181
TauI GCSGC 1 cut(s) 1288
TfiI GAWTC 7 cut(s) 263, 407, 712, 728, 902, 1034, 1343
Tru1I TTAA 5 cut(s) 402, 540, 558, 1248, 1649
Tru9I TTAA 5 cut(s) 402, 540, 558, 1248, 1649
TscAI CASTG 5 cut(s) 15, 384, 691, 1260, 1483
TseFI GTSAC 3 cut(s) 306, 1021, 1144
TseI GCWGC 3 cut(s) 845, 1262, 1376
Tsp45I GTSAC 3 cut(s) 306, 1021, 1144
TspRI CASTG 5 cut(s) 15, 384, 691, 1260, 1483
VneI GTGCAC 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 446
VspI ATTAAT 1 cut(s) 402
XapI RAATTY 2 cut(s) 1120, 1357
XceI RCATGY 2 cut(s) 975, 1619
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 3 cut(s) 1026, 1575, 1697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.