Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8219288.1

Orthogroup ID

OG0003150

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 727

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8219288.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

tttgctgctgaaccagagaaagacaagcggcgctctgtaatgagcacattcgagcatgggaaaaacttaggcctaaaacagacagattcatctgaggagaattcagatgatagtatagctgcagttcccacagtaaaaggtgggatgagaaggaaacatcatcgagcttggactcttgttgaagttatgaaattagtcgagggtgtctctaagtgtggcactggcagatggtctgagatcaaaaggctttcatttgcaacgttttcatatcgtacttctgttgatctcaaggtatgtattggagttatgtcaaaaatggttaaaatgataaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

111

Amino Acids

12.48

Weight (kDa)

9.78

Isoelectric Point (pI)

57.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17460 AT1G17460 AT1G17460 AT1G72650 AT1G72650
fragaria_vesca	FvH4_6g34560 FvH4_6g34560 FvH4_6g34560 FvH4_6g34560 FvH4_6g34560
malus_domestica	MD09G1184800.v1.1 MD17G1168700.v1.1
prunus_persica	Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1
pyrus_communis	pycom09g10240 pycom17g16720
rosa_chinensis	RchiOBHm_Chr2g0145091
rosa_laevigata	RLG00000020124
rosa_multiflora	Rmu_co8219288.1_g000001 Rmu_co8448595.1_g000001 Rmu_sc0027368.1_g000001
rosa_roxburghii	Rroxscaffold_2G00100880
rosa_rugosa	Rorug02G0390200 Rorug02G0390200 Rorug02G0390300 Rorug02G0390300 Rorug02G0390300 Rorug02G0390300
rosa_samantha	Rh2AG442900 Rh2BG453900 Rh2CG429900 Rh2DG463900
rosa_wichuraiana	Rw2G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	28
AclI	AACGTT	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	100
AfaI	GTAC	1 cut(s)	274
AgsI	TTSAA	1 cut(s)	182
AluBI	AGCT	2 cut(s)	119, 167
AluI	AGCT	2 cut(s)	119, 167
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	1 cut(s)	211
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	5, 119
ApoI	RAATTY	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	211
BfmI	CTRYAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	34
BisI	GCNGC	3 cut(s)	6, 29, 120
BlsI	GCNGC	3 cut(s)	7, 30, 121
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpuEI	CTTGAG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	84, 225
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	106
BshFI	GGCC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	237, 283
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	2 cut(s)	85, 226
BspMAI	CTGCAG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	226
BssMI	GATC	2 cut(s)	237, 283
Bst4CI	ACNGT	1 cut(s)	133
BstDEI	CTNAG	4 cut(s)	67, 93, 210, 234
BstF5I	GGATG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	2 cut(s)	240, 286
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	237, 283
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	219
CfoI	GCGC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	4 cut(s)	72, 119, 167, 247
CviKI_1	RGCY	4 cut(s)	72, 119, 167, 247
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	4 cut(s)	67, 93, 210, 234
DpnI	GATC	2 cut(s)	239, 285
DpnII	GATC	2 cut(s)	237, 283
Eco147I	AGGCCT	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	100
FaeI	CATG	1 cut(s)	59
FaiI	YATR	6 cut(s)	57, 116, 188, 268, 295, 308
FatI	CATG	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	6, 29, 120
FokI	GGATG	1 cut(s)	157
Fsp4HI	GCNGC	3 cut(s)	6, 29, 120
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	3 cut(s)	6, 29, 120
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	2 cut(s)	86, 172
Hpy188I	TCNGA	3 cut(s)	94, 106, 235
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	122, 257
HpyF3I	CTNAG	4 cut(s)	67, 93, 210, 234
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	237, 283
LpnPI	CCDG	2 cut(s)	27, 207
Lsp1109I	GCAGC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	260
MalI	GATC	2 cut(s)	239, 285
MboI	GATC	2 cut(s)	237, 283
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	2 cut(s)	100, 191
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	2 cut(s)	88, 193
MseI	TTAA	1 cut(s)	321
NdeII	GATC	2 cut(s)	237, 283
NlaIII	CATG	1 cut(s)	59
PceI	AGGCCT	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	7, 30, 121
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp1406I	AACGTT	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	3 cut(s)	6, 29, 120
Sau3AI	GATC	2 cut(s)	237, 283
SchI	GAGTC	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	5 cut(s)	121, 142, 169, 263, 294
SfcI	CTRYAG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	2 cut(s)	100, 191
SseBI	AGGCCT	1 cut(s)	72
SsiI	CCGC	1 cut(s)	28
StuI	AGGCCT	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	3 cut(s)	51, 163, 198
TasI	AATT	2 cut(s)	100, 191
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	2 cut(s)	5, 119
TspDTI	ATGAA	4 cut(s)	78, 203, 240, 255
TspRI	CASTG	1 cut(s)	226
XapI	RAATTY	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.