FvH4_6g34560
MYB Family

isoform X1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
27271928 .. 27277299
5372 bp
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UTR
Exon/CDS
Intron
FvH4_6g34560.t2

Sequence Viewer

Length: 1821 bp
ATGGAAGCAGTGTTTGTGGTTGAGGGGAATGAAGAAGGGAAGTGTGAGGAGAGTGGGGTTGAGAATAGTAGCTCGTCTTTGTCTTCTCCGAACCAGATTGCCGATCCTGTTGTCTACAAGCTTGTTCGGGTTGAAGGTGATGGGAGATTAGTGCCAGCAACAGATGATGAAGTAATGGAGGTTGAAGATCTTATTGTTGATGAGCAGATTGAATTGCCTGTTGTTATGAACACTGGAACTGCTGAGTGCATTTCTAACGAGTCTACATCTGGGAAGCCTCAGAAAGAAAGCTCAGAAGGTCCGTCAGCTTCGAAGGGCACAGAAGCTGATGCAAAATTAAGTGCACATCTTGAGGAGATTGCTCCTGCATCATCACTGAGCATAGATGCCAACCACATTAATGAAGCTGGGACAAAAGGGGAGTGCTCAAAACATCCAGATGGACCCATAGAAAGCGTATCATTAGCTTCTGCCGTCTGCACTAGTTCAAAGCTTGATTTTTATGAATCAAACAGTGAGATATGCTTAGACAACCTATCAATAAGAGAACTTCATGACTTATTTAGAGCCACATTTGGGCGAGAAACTTCTGTCAAGGACAAACTCTGGCTTAAAAGGAGAATCACAATGGGATTGACTAATTCTTGTGATGTTTCAACCACAACTTTCACTATAAGAAATAACAAATTGGTGAAGAAGGGAGAAGAGAATAGCTTGCGGAATGCTAATGATATGCACATTCAGGGTTCTGATGGTGGAGCAAAGAATCTTGAGTATGAAAATTCACCAGCAAGCCACAGTTGCCCTTTAGAAAATCATCAAGTTGTTTCAGCCAAGAGATCTGGAAGCCTTAGTGAAGAAGAATATGTCAGTGAGGATCATATGATGGATCAGAGAGCTGCCAAGAGAGTTCGGAAGCCCACTAAGCGATATATTGAAGAACTTTCAGAAGGGGACTCAAGAGATCATAGCCCAAAAGTGATTAGTTCTGCTAAAACTTCTGGACAAGAAGAAACATGTCCAACATATTCTGCGAGGCCTCTTAGAAATGTCTCTTCAAATGAGAGGACTATTGTCACCAGGTTGGATTCTCTTGGTGGATCTGGGGTTCAGGTACCTTATGTTTCTCGGGTTCGAAGAAGCCGTCCGAGGAAAAATATTATGGCTCTTATGAACTTCAATCAAAGTGGAATGGGTGTGACTGCTAAACTGGTAAAAGAGACCCTTTCTGTGTCTACTTCTCTTCCAGAGAGTGAATGTGCAGACAAAGTTTTGAAAGCCAGATCTGCGTCTGAACAGATTAAGCCCCTGTTTGCTGCTGAACCAGAGAAAGACAAGCGGCAGTCTGTAATGGGCACATTTGAACATGGGAAAAACTTGGGGGGCTTGAAACAGACAGATTCATCTGAGGACTTCTCAGATGATAGTATAGCTGCAGTTCCCACAGTAAAAGGTGGGATGAGAAGGAAACATCATCGAGCTTGGACTCTTGTTGAAGTTATGAAATTAGTTGAGGGTGTCTCTAAGTGTGGCACTGGCAGATGGTCTGAGATCAAAAGGCTTTCATTTGCAACGTTTTCATATCGTACTTCTGTTGATCTTAAGGACAAGTGGAGGAACCTGCTGAAAGCTAGTTTTGCACAAACACCTCCTGATGATGGGTCACGGAAACATGTGGCAGTGCCTATCCCAGCATCAATTTTGTTAAAAGTAAGAGAGCTTGCTGAGATGCACGCGCAGGTACCTCCAAATCTAGGGGCGAGCAAGCTGGCTGCCAGTGTTACTCGAAGTGTGCATCAAACAAGATCAGGCTACTTGTAA

Protein Analysis

607

Amino Acids

66.21

Weight (kDa)

6.26

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1629, 1729
Acc65I GGTACC 2 cut(s) 1114, 1741
AccB1I GGYRCC 2 cut(s) 1114, 1741
AccI GTMKAC 3 cut(s) 114, 263, 1235
AccII CGCG 1 cut(s) 1736
AciI CCGC 2 cut(s) 718, 1339
AclI AACGTT 1 cut(s) 1574
AclWI GGATC 4 cut(s) 98, 885, 897, 1108
AcsI RAATTY 1 cut(s) 781
AfaI GTAC 3 cut(s) 1116, 1588, 1743
AfiI CCNNNNNNNGG 3 cut(s) 576, 1658, 1754
AflII CTTAAG 1 cut(s) 1601
AflIII ACRYGT 2 cut(s) 1016, 1672
AhlI ACTAGT 1 cut(s) 482
AjnI CCWGG 1 cut(s) 1079
AloI GAACNNNNNNTCC 2 cut(s) 1092, 1124
Alw21I GWGCWC 2 cut(s) 346, 428
Alw26I GTCTC 3 cut(s) 1057, 1214, 1525
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 4 cut(s) 98, 885, 897, 1108
AlwNI CAGNNNCTG 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 1128
AoxI GGCC 1 cut(s) 1037
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 4 cut(s) 899, 1316, 1433, 1772
ApoI RAATTY 1 cut(s) 781
ArsI GACNNNNNNTTYG 2 cut(s) 1129, 1161
AseI ATTAAT 1 cut(s) 399
Asp718I GGTACC 2 cut(s) 1114, 1741
AspLEI GCGC 1 cut(s) 1738
AspS9I GGNCC 2 cut(s) 299, 443
AsuHPI GGTGA 4 cut(s) 149, 703, 777, 1069
AsuII TTCGAA 2 cut(s) 311, 1135
AvaI CYCGRG 1 cut(s) 1128
AvaII GGWCC 2 cut(s) 299, 443
BaeGI GKGCMC 3 cut(s) 320, 346, 1358
BanI GGYRCC 2 cut(s) 1114, 1741
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 2 cut(s) 346, 428
BbvI GCAGC 4 cut(s) 886, 1303, 1420, 1759
BccI CCATC 6 cut(s) 134, 434, 746, 880, 1536, 1652
BceAI ACGGC 2 cut(s) 458, 1128
BciT130I CCWGG 1 cut(s) 1081
BcoDI GTCTC 3 cut(s) 1057, 1214, 1525
BcuI ACTAGT 1 cut(s) 482
BfaI CTAG 3 cut(s) 483, 1632, 1754
BfmI CTRYAG 1 cut(s) 1434
BfrI CTTAAG 1 cut(s) 1601
BfuAI ACCTGC 2 cut(s) 1629, 1729
BglII AGATCT 3 cut(s) 187, 839, 1283
BisI GCNGC 5 cut(s) 900, 1317, 1340, 1434, 1773
BlsI GCNGC 5 cut(s) 901, 1318, 1341, 1435, 1774
Bme1390I CCNGG 1 cut(s) 1081
Bme18I GGWCC 2 cut(s) 299, 443
BmeT110I CYCGRG 1 cut(s) 1128
BmgT120I GGNCC 2 cut(s) 299, 443
BmiI GGNNCC 4 cut(s) 445, 1116, 1619, 1743
BmrFI CCNGG 1 cut(s) 1081
BmsI GCATC 6 cut(s) 319, 376, 377, 1703, 1719, 1804
BoxI GACNNNNGTC 1 cut(s) 1073
BpiI GAAGAC 1 cut(s) 75
BplI GAGNNNNNCTC 4 cut(s) 1400, 1432, 1505, 1537
Bpu14I TTCGAA 2 cut(s) 311, 1135
BpuEI CTTGAG 3 cut(s) 371, 791, 943
BsaI GGTCTC 1 cut(s) 1214
BsaJI CCNNGG 1 cut(s) 1148
Bsc4I CCNNNNNNNGG 3 cut(s) 576, 1658, 1754
Bse1I ACTGG 4 cut(s) 238, 1215, 1540, 1776
BseBI CCWGG 1 cut(s) 1081
BseDI CCNNGG 1 cut(s) 1148
BseGI GGATG 2 cut(s) 433, 1464
BseLI CCNNNNNNNGG 3 cut(s) 576, 1658, 1754
BseMII CTCAG 8 cut(s) 234, 293, 306, 368, 1398, 1431, 1539, 1716
BseNI ACTGG 4 cut(s) 238, 1215, 1540, 1776
BseRI GAGGAG 2 cut(s) 62, 368
BseSI GKGCMC 3 cut(s) 320, 346, 1358
BseXI GCAGC 4 cut(s) 886, 1303, 1420, 1759
BseYI CCCAGC 2 cut(s) 407, 1690
BsgI GTGCAG 2 cut(s) 463, 1281
Bsh1236I CGCG 1 cut(s) 1736
BshFI GGCC 1 cut(s) 1039
BshNI GGYRCC 2 cut(s) 1114, 1741
BsiHKAI GWGCWC 2 cut(s) 346, 428
BsiHKCI CYCGRG 1 cut(s) 1128
BslFI GGGAC 2 cut(s) 424, 968
BslI CCNNNNNNNGG 3 cut(s) 576, 1658, 1754
BsmAI GTCTC 3 cut(s) 1057, 1214, 1525
BsmFI GGGAC 2 cut(s) 424, 968
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 1 cut(s) 1039
Bso31I GGTCTC 1 cut(s) 1214
BsoBI CYCGRG 1 cut(s) 1128
Bsp119I TTCGAA 2 cut(s) 311, 1135
Bsp1286I GDGCHC 4 cut(s) 320, 346, 428, 1358
BspACI CCGC 2 cut(s) 718, 1339
BspANI GGCC 1 cut(s) 1039
BspCNI CTCAG 8 cut(s) 235, 292, 305, 369, 1399, 1430, 1540, 1717
BspFNI CGCG 1 cut(s) 1736
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 4 cut(s) 445, 1116, 1619, 1743
BspMAI CTGCAG 1 cut(s) 1438
BspMI ACCTGC 2 cut(s) 1629, 1729
BspPI GGATC 4 cut(s) 98, 885, 897, 1108
BspT104I TTCGAA 2 cut(s) 311, 1135
BspT107I GGYRCC 2 cut(s) 1114, 1741
BspTI CTTAAG 1 cut(s) 1601
BspTNI GGTCTC 1 cut(s) 1214
BsrI ACTGG 4 cut(s) 238, 1215, 1540, 1776
BssECI CCNNGG 1 cut(s) 1148
Bst2UI CCWGG 1 cut(s) 1081
Bst4CI ACNGT 3 cut(s) 515, 800, 1447
Bst6I CTCTTC 3 cut(s) 699, 1060, 1248
BstAFI CTTAAG 1 cut(s) 1601
BstBI TTCGAA 2 cut(s) 311, 1135
BstC8I GCNNGC 8 cut(s) 156, 716, 793, 1722, 1734, 1762, 1766, 1770
BstF5I GGATG 2 cut(s) 433, 1464
BstFNI CGCG 1 cut(s) 1736
BstHHI GCGC 1 cut(s) 1738
BstMAI GTCTC 3 cut(s) 1057, 1214, 1525
BstMWI GCNNNNNNNGC 4 cut(s) 801, 925, 1286, 1637
BstNI CCWGG 1 cut(s) 1081
BstNSI RCATGY 2 cut(s) 1020, 1676
BstPAI GACNNNNGTC 1 cut(s) 1073
BstSCI CCNGG 1 cut(s) 1079
BstSFI CTRYAG 1 cut(s) 1434
BstSLI GKGCMC 3 cut(s) 320, 346, 1358
BstUI CGCG 1 cut(s) 1736
BstV1I GCAGC 4 cut(s) 886, 1303, 1420, 1759
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 4 cut(s) 187, 839, 1100, 1283
BstYI RGATCY 4 cut(s) 187, 839, 1100, 1283
BsuRI GGCC 1 cut(s) 1039
BtsCI GGATG 2 cut(s) 433, 1464
BtsI GCAGTG 2 cut(s) 15, 1686
BtsIMutI CAGTG 8 cut(s) 15, 231, 374, 520, 877, 1533, 1686, 1783
BveI ACCTGC 2 cut(s) 1629, 1729
Cac8I GCNNGC 8 cut(s) 156, 716, 793, 1722, 1734, 1762, 1766, 1770
CaiI CAGNNNCTG 1 cut(s) 326
CciI TCATGA 1 cut(s) 553
CfoI GCGC 1 cut(s) 1738
Cfr13I GGNCC 2 cut(s) 299, 443
CseI GACGC 1 cut(s) 1278
CsiI ACCWGGT 1 cut(s) 1079
Csp6I GTAC 3 cut(s) 1115, 1587, 1742
CspCI CAANNNNNGTGG 2 cut(s) 1168, 1203
CviAII CATG 4 cut(s) 554, 1017, 1367, 1673
CviQI GTAC 3 cut(s) 1115, 1587, 1742
Eam1104I CTCTTC 3 cut(s) 699, 1060, 1248
EarI CTCTTC 3 cut(s) 699, 1060, 1248
Eco147I AGGCCT 1 cut(s) 1039
Eco31I GGTCTC 1 cut(s) 1214
Eco47I GGWCC 2 cut(s) 299, 443
Eco88I CYCGRG 1 cut(s) 1128
EcoRII CCWGG 1 cut(s) 1079
FaeI CATG 4 cut(s) 557, 1020, 1370, 1676
FalI AAGNNNNNCTT 2 cut(s) 1209, 1241
FaqI GGGAC 2 cut(s) 424, 968
FatI CATG 4 cut(s) 553, 1016, 1366, 1672
FauNDI CATATG 1 cut(s) 882
FblI GTMKAC 3 cut(s) 114, 263, 1235
Fnu4HI GCNGC 5 cut(s) 900, 1317, 1340, 1434, 1773
FokI GGATG 2 cut(s) 420, 1471
Fsp4HI GCNGC 5 cut(s) 900, 1317, 1340, 1434, 1773
FspBI CTAG 3 cut(s) 483, 1632, 1754
GlaI GCGC 1 cut(s) 1737
GluI GCNGC 5 cut(s) 900, 1317, 1340, 1434, 1773
GsaI CCCAGC 2 cut(s) 411, 1694
HaeIII GGCC 1 cut(s) 1039
HgaI GACGC 1 cut(s) 1278
HhaI GCGC 1 cut(s) 1738
Hin1II CATG 4 cut(s) 557, 1020, 1370, 1676
Hin6I GCGC 1 cut(s) 1736
HinP1I GCGC 1 cut(s) 1736
HindIII AAGCTT 2 cut(s) 119, 491
HinfI GANTC 8 cut(s) 260, 506, 621, 766, 956, 1088, 1400, 1486
HphI GGTGA 4 cut(s) 149, 703, 777, 1069
Hpy166II GTNNAC 4 cut(s) 115, 264, 344, 1236
Hpy188III TCNNGA 9 cut(s) 350, 437, 554, 770, 843, 960, 1002, 1247, 1652
Hpy8I GTNNAC 4 cut(s) 115, 264, 344, 1236
HpyAV CCTTC 7 cut(s) 29, 128, 290, 307, 691, 944, 1458
HpyCH4III ACNGT 3 cut(s) 515, 800, 1447
HpyCH4IV ACGT 1 cut(s) 1574
HpyF10VI GCNNNNNNNGC 4 cut(s) 801, 925, 1286, 1637
HpySE526I ACGT 1 cut(s) 1574
Hsp92II CATG 4 cut(s) 557, 1020, 1370, 1676
HspAI GCGC 1 cut(s) 1736
KpnI GGTACC 2 cut(s) 1118, 1745
LmnI GCTCC 2 cut(s) 367, 758
Lsp1109I GCAGC 4 cut(s) 886, 1303, 1420, 1759
LweI GCATC 6 cut(s) 319, 376, 377, 1703, 1719, 1804
MabI ACCWGGT 1 cut(s) 1079
MaeI CTAG 3 cut(s) 483, 1632, 1754
MaeII ACGT 1 cut(s) 1574
MaeIII GTNAC 4 cut(s) 1075, 1198, 1662, 1780
MflI RGATCY 4 cut(s) 187, 839, 1100, 1283
MhlI GDGCHC 4 cut(s) 320, 346, 428, 1358
MluCI AATT 7 cut(s) 212, 335, 640, 686, 781, 1505, 1698
MlyI GAGTC 3 cut(s) 269, 950, 1480
MmeI TCCRAC 2 cut(s) 1046, 1065
MseI TTAA 6 cut(s) 338, 399, 612, 1302, 1602, 1706
MslI CAYNNNNRTG 2 cut(s) 399, 438
MspCI CTTAAG 1 cut(s) 1601
MspR9I CCNGG 1 cut(s) 1081
Mva1269I GAATGC 1 cut(s) 727
MvaI CCWGG 1 cut(s) 1081
MvnI CGCG 1 cut(s) 1736
MwoI GCNNNNNNNGC 4 cut(s) 801, 925, 1286, 1637
NdeI CATATG 1 cut(s) 882
NlaIII CATG 4 cut(s) 557, 1020, 1370, 1676
NlaIV GGNNCC 4 cut(s) 445, 1116, 1619, 1743
NmuCI GTSAC 3 cut(s) 1075, 1198, 1662
NspI RCATGY 2 cut(s) 1020, 1676
NspV TTCGAA 2 cut(s) 311, 1135
PagI TCATGA 1 cut(s) 553
PceI AGGCCT 1 cut(s) 1039
PciI ACATGT 2 cut(s) 1016, 1672
PcsI WCGNNNNNNNCGW 1 cut(s) 1141
PctI GAATGC 1 cut(s) 727
PfeI GAWTC 5 cut(s) 506, 621, 766, 1088, 1400
PkrI GCNGC 5 cut(s) 901, 1318, 1341, 1435, 1774
PleI GAGTC 3 cut(s) 268, 950, 1480
PpsI GAGTC 3 cut(s) 268, 950, 1480
PscI ACATGT 2 cut(s) 1016, 1672
PshAI GACNNNNGTC 1 cut(s) 1073
PshBI ATTAAT 1 cut(s) 399
Psp1406I AACGTT 1 cut(s) 1574
Psp6I CCWGG 1 cut(s) 1079
PspFI CCCAGC 2 cut(s) 407, 1690
PspGI CCWGG 1 cut(s) 1079
PspN4I GGNNCC 4 cut(s) 445, 1116, 1619, 1743
PspPI GGNCC 2 cut(s) 299, 443
PstI CTGCAG 1 cut(s) 1438
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 4 cut(s) 187, 839, 1100, 1283
RsaI GTAC 3 cut(s) 1116, 1588, 1743
RsaNI GTAC 3 cut(s) 1115, 1587, 1742
RseI CAYNNNNRTG 2 cut(s) 399, 438
SaqAI TTAA 6 cut(s) 338, 399, 612, 1302, 1602, 1706
SatI GCNGC 5 cut(s) 900, 1317, 1340, 1434, 1773
Sau96I GGNCC 2 cut(s) 299, 443
SchI GAGTC 3 cut(s) 269, 950, 1480
ScrFI CCNGG 1 cut(s) 1081
SduI GDGCHC 4 cut(s) 320, 346, 428, 1358
SexAI ACCWGGT 1 cut(s) 1079
SfaNI GCATC 6 cut(s) 319, 376, 377, 1703, 1719, 1804
SfcI CTRYAG 1 cut(s) 1434
SfuI TTCGAA 2 cut(s) 311, 1135
SinI GGWCC 2 cut(s) 299, 443
SmiMI CAYNNNNRTG 2 cut(s) 399, 438
SmlI CTYRAG 4 cut(s) 350, 770, 958, 1601
SmoI CTYRAG 4 cut(s) 350, 770, 958, 1601
SpeI ACTAGT 1 cut(s) 482
Sse9I AATT 7 cut(s) 212, 335, 640, 686, 781, 1505, 1698
SseBI AGGCCT 1 cut(s) 1039
SsiI CCGC 2 cut(s) 718, 1339
SspI AATATT 1 cut(s) 1159
SspMI CTAG 3 cut(s) 483, 1632, 1754
StuI AGGCCT 1 cut(s) 1039
StyD4I CCNGG 1 cut(s) 1079
TaaI ACNGT 3 cut(s) 515, 800, 1447
TaiI ACGT 1 cut(s) 1577
TaqI TCGA 4 cut(s) 311, 1135, 1477, 1786
TasI AATT 7 cut(s) 212, 335, 640, 686, 781, 1505, 1698
TauI GCSGC 1 cut(s) 1342
TfiI GAWTC 5 cut(s) 506, 621, 766, 1088, 1400
Tru1I TTAA 6 cut(s) 338, 399, 612, 1302, 1602, 1706
Tru9I TTAA 6 cut(s) 338, 399, 612, 1302, 1602, 1706
TscAI CASTG 8 cut(s) 15, 238, 381, 520, 877, 1540, 1686, 1783
TseFI GTSAC 3 cut(s) 1075, 1198, 1662
TseI GCWGC 4 cut(s) 899, 1316, 1433, 1772
Tsp45I GTSAC 3 cut(s) 1075, 1198, 1662
TspGWI ACGGA 2 cut(s) 291, 1681
TspRI CASTG 8 cut(s) 15, 238, 381, 520, 877, 1540, 1686, 1783
Vha464I CTTAAG 1 cut(s) 1601
VneI GTGCAC 1 cut(s) 342
VpaK11BI GGWCC 2 cut(s) 299, 443
VspI ATTAAT 1 cut(s) 399
XapI RAATTY 1 cut(s) 781
XceI RCATGY 2 cut(s) 1020, 1676
XmiI GTMKAC 3 cut(s) 114, 263, 1235
XspI CTAG 3 cut(s) 483, 1632, 1754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.