Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8448595.1

Orthogroup ID

OG0003150

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1417

Gene Structure 1417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8448595.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

gaaattgctccttcgtcatcactgagcttagatgtcagccacattaatgaatctgagacaaaaggggagtgctcaaaacatccagatggaccaatagaaagcgtatcatcagcttctgctgtctgcactagttcaaagcgtgatttttatgcatcaaacagggcattatgcctggacaacctatcaattagagaacttcatgaattatttagagcaacctttgggcgagaaactactgttaaggacaagctctggcttaaaaggaggatcgcgatgggattgactaattcttgtgatgtttcaaccacaactttcactattataaataagaaattggtgaagaatggcaaagacaatagcttgcagaatgctcatgatatgcacactgagggttctgatgttggagcaaagaatcttgggtatgaagattcaccaaaaagccacaatagccaattagaaaatcatcaagttgtttcagccaagagatcgggaagccttagtgaagaagaatatggctgtgaggatcataccatggatcagagagctgccaagagagttcggaagcccactaagcgatacattgaagaactttctgaagtggaatcaagagatcatagcccaaaagtgattagttccgctaaaactgctggacatgaagaaacgtctccaacatgttctgcaaggcctcttagaaatgtctctacaaatgagagaactattgtcactaggttggattctcttggtggatctggggttcaggttccttatgtttctcgggttcgaagaagccgtccaaggaaaaatattatggctcttatgaatttcaatccaagtggaatgggtgtgacagctaaactggtaaaagagacccttgctgtgtgtacttctcttccagagagtgagtgtgcagacaaagttttgaaagccagatctgcttctgaacagattaagccactggtaagatcttcgttgtttaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

326

Amino Acids

35.89

Weight (kDa)

8.94

Isoelectric Point (pI)

63.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17460 AT1G17460 AT1G17460 AT1G72650 AT1G72650
fragaria_vesca	FvH4_6g34560 FvH4_6g34560 FvH4_6g34560 FvH4_6g34560 FvH4_6g34560
malus_domestica	MD09G1184800.v1.1 MD17G1168700.v1.1
prunus_persica	Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1
pyrus_communis	pycom09g10240 pycom17g16720
rosa_chinensis	RchiOBHm_Chr2g0145091
rosa_laevigata	RLG00000020124
rosa_multiflora	Rmu_co8219288.1_g000001 Rmu_co8448595.1_g000001 Rmu_sc0027368.1_g000001
rosa_roxburghii	Rroxscaffold_2G00100880
rosa_rugosa	Rorug02G0390200 Rorug02G0390200 Rorug02G0390300 Rorug02G0390300 Rorug02G0390300 Rorug02G0390300
rosa_samantha	Rh2AG442900 Rh2BG453900 Rh2CG429900 Rh2DG463900
rosa_wichuraiana	Rw2G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
AccII	CGCG	1 cut(s)	272
AciI	CCGC	1 cut(s)	636
AclWI	GGATC	4 cut(s)	275, 531, 543, 754
AcsI	RAATTY	1 cut(s)	820
AcuI	CTGAAG	1 cut(s)	615
AfaI	GTAC	1 cut(s)	883
AflIII	ACRYGT	1 cut(s)	671
AgsI	TTSAA	5 cut(s)	135, 303, 584, 826, 922
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	171
AloI	GAACNNNNNNTCC	2 cut(s)	738, 770
AluBI	AGCT	6 cut(s)	27, 113, 250, 360, 545, 851
AluI	AGCT	6 cut(s)	27, 113, 250, 360, 545, 851
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	4 cut(s)	50, 669, 703, 860
AlwI	GGATC	4 cut(s)	275, 531, 543, 754
AlwNI	CAGNNNCTG	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	774
AoxI	GGCC	1 cut(s)	683
ApeKI	GCWGC	1 cut(s)	545
ApoI	RAATTY	1 cut(s)	820
ArsI	GACNNNNNNTTYG	2 cut(s)	775, 807
AseI	ATTAAT	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	349, 423
AsuII	TTCGAA	1 cut(s)	781
AvaI	CYCGRG	1 cut(s)	774
AvaII	GGWCC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	532
BccI	CCATC	2 cut(s)	80, 268
BceAI	ACGGC	1 cut(s)	774
BciT130I	CCWGG	1 cut(s)	173
BcoDI	GTCTC	4 cut(s)	50, 669, 703, 860
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	2 cut(s)	129, 726
BglII	AGATCT	2 cut(s)	929, 962
BisI	GCNGC	1 cut(s)	546
BlsI	GCNGC	1 cut(s)	547
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	774
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	762
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	781
BsaI	GGTCTC	1 cut(s)	860
BsaJI	CCNNGG	2 cut(s)	531, 794
Bse1I	ACTGG	2 cut(s)	861, 960
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	531, 794
BseGI	GGATG	1 cut(s)	79
BseMII	CTCAG	3 cut(s)	14, 45, 378
BseNI	ACTGG	2 cut(s)	861, 960
BseXI	GCAGC	1 cut(s)	532
BsgI	GTGCAG	2 cut(s)	109, 927
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	774
BsmAI	GTCTC	4 cut(s)	50, 669, 703, 860
BsmBI	CGTCTC	1 cut(s)	669
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	685
Bso31I	GGTCTC	1 cut(s)	860
BsoBI	CYCGRG	1 cut(s)	774
Bsp119I	TTCGAA	1 cut(s)	781
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	8 cut(s)	267, 485, 523, 535, 610, 746, 929, 962
Bsp19I	CCATGG	1 cut(s)	531
Bsp68I	TCGCGA	1 cut(s)	272
BspACI	CCGC	1 cut(s)	636
BspANI	GGCC	1 cut(s)	685
BspCNI	CTCAG	3 cut(s)	15, 46, 379
BspFNI	CGCG	1 cut(s)	272
BspHI	TCATGA	2 cut(s)	199, 373
BspLI	GGNNCC	1 cut(s)	762
BspPI	GGATC	4 cut(s)	275, 531, 543, 754
BspT104I	TTCGAA	1 cut(s)	781
BspTNI	GGTCTC	1 cut(s)	860
BsrI	ACTGG	2 cut(s)	861, 960
BssECI	CCNNGG	2 cut(s)	531, 794
BssMI	GATC	8 cut(s)	267, 485, 523, 535, 610, 746, 929, 962
BssT1I	CCWWGG	2 cut(s)	531, 794
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	894
BstBI	TTCGAA	1 cut(s)	781
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	7 cut(s)	23, 28, 54, 387, 497, 570, 689
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	272
BstKTI	GATC	8 cut(s)	270, 488, 526, 538, 613, 749, 932, 965
BstMAI	GTCTC	4 cut(s)	50, 669, 703, 860
BstMBI	GATC	8 cut(s)	267, 485, 523, 535, 610, 746, 929, 962
BstMWI	GCNNNNNNNGC	4 cut(s)	447, 571, 644, 932
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	675
BstSCI	CCNGG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	532
BstX2I	RGATCY	3 cut(s)	746, 929, 962
BstYI	RGATCY	3 cut(s)	746, 929, 962
BsuRI	GGCC	1 cut(s)	685
BtgI	CCRYGG	1 cut(s)	531
BtgZI	GCGATG	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	3 cut(s)	20, 384, 953
BtuMI	TCGCGA	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	362
CaiI	CAGNNNCTG	1 cut(s)	116
CciI	TCATGA	2 cut(s)	199, 373
Cfr13I	GGNCC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	882
CspCI	CAANNNNNGTGG	2 cut(s)	814, 849
CviAII	CATG	5 cut(s)	200, 374, 532, 653, 672
CviQI	GTAC	1 cut(s)	882
DdeI	CTNAG	7 cut(s)	23, 28, 54, 387, 497, 570, 689
DpnI	GATC	8 cut(s)	269, 487, 525, 537, 612, 748, 931, 964
DpnII	GATC	8 cut(s)	267, 485, 523, 535, 610, 746, 929, 962
Eam1104I	CTCTTC	1 cut(s)	894
EarI	CTCTTC	1 cut(s)	894
Eco130I	CCWWGG	2 cut(s)	531, 794
Eco147I	AGGCCT	1 cut(s)	685
Eco31I	GGTCTC	1 cut(s)	860
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	774
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	531, 794
EcoT22I	ATGCAT	1 cut(s)	154
ErhI	CCWWGG	2 cut(s)	531, 794
Esp3I	CGTCTC	1 cut(s)	669
FaeI	CATG	5 cut(s)	203, 377, 535, 656, 675
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FatI	CATG	5 cut(s)	199, 373, 531, 652, 671
Fnu4HI	GCNGC	1 cut(s)	546
FokI	GGATG	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	546
FspBI	CTAG	2 cut(s)	129, 726
GluI	GCNGC	1 cut(s)	546
HaeIII	GGCC	1 cut(s)	685
Hin1II	CATG	5 cut(s)	203, 377, 535, 656, 675
HinfI	GANTC	5 cut(s)	50, 412, 428, 602, 734
HphI	GGTGA	2 cut(s)	349, 423
Hpy166II	GTNNAC	1 cut(s)	882
Hpy188I	TCNGA	6 cut(s)	55, 397, 540, 561, 595, 940
Hpy188III	TCNNGA	7 cut(s)	83, 200, 271, 374, 489, 606, 893
Hpy8I	GTNNAC	1 cut(s)	882
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	662
HpyCH4V	TGCA	6 cut(s)	126, 152, 364, 382, 680, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	447, 571, 644, 932
HpyF3I	CTNAG	7 cut(s)	23, 28, 54, 387, 497, 570, 689
HpySE526I	ACGT	1 cut(s)	662
Hsp92II	CATG	5 cut(s)	203, 377, 535, 656, 675
Kzo9I	GATC	8 cut(s)	267, 485, 523, 535, 610, 746, 929, 962
LmnI	GCTCC	2 cut(s)	13, 404
Lsp1109I	GCAGC	1 cut(s)	532
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	2 cut(s)	129, 726
MaeII	ACGT	1 cut(s)	662
MaeIII	GTNAC	2 cut(s)	721, 844
MalI	GATC	8 cut(s)	269, 487, 525, 537, 612, 748, 931, 964
MboI	GATC	8 cut(s)	267, 485, 523, 535, 610, 746, 929, 962
MboII	GAAGA	9 cut(s)	352, 437, 515, 518, 596, 668, 795, 881, 957
MflI	RGATCY	3 cut(s)	746, 929, 962
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	7 cut(s)	3, 186, 203, 286, 332, 452, 820
MmeI	TCCRAC	3 cut(s)	382, 692, 711
MnlI	CCTC	4 cut(s)	258, 382, 514, 696
Mph1103I	ATGCAT	1 cut(s)	154
MseI	TTAA	5 cut(s)	45, 240, 258, 948, 975
MslI	CAYNNNNRTG	2 cut(s)	45, 84
MspR9I	CCNGG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	4 cut(s)	447, 571, 644, 932
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	8 cut(s)	267, 485, 523, 535, 610, 746, 929, 962
NlaIII	CATG	5 cut(s)	203, 377, 535, 656, 675
NlaIV	GGNNCC	1 cut(s)	762
NmuCI	GTSAC	2 cut(s)	721, 844
NruI	TCGCGA	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	154
NspI	RCATGY	1 cut(s)	675
NspV	TTCGAA	1 cut(s)	781
PagI	TCATGA	2 cut(s)	199, 373
PceI	AGGCCT	1 cut(s)	685
PciI	ACATGT	1 cut(s)	671
PcsI	WCGNNNNNNNCGW	1 cut(s)	787
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	5 cut(s)	50, 412, 428, 602, 734
PkrI	GCNGC	1 cut(s)	547
PscI	ACATGT	1 cut(s)	671
PshBI	ATTAAT	1 cut(s)	45
PsiI	TTATAA	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	762
PspPI	GGNCC	1 cut(s)	89
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	3 cut(s)	746, 929, 962
RruI	TCGCGA	1 cut(s)	272
RsaI	GTAC	1 cut(s)	883
RsaNI	GTAC	1 cut(s)	882
RseI	CAYNNNNRTG	2 cut(s)	45, 84
SaqAI	TTAA	5 cut(s)	45, 240, 258, 948, 975
SatI	GCNGC	1 cut(s)	546
Sau3AI	GATC	8 cut(s)	267, 485, 523, 535, 610, 746, 929, 962
Sau96I	GGNCC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	74
SfaNI	GCATC	1 cut(s)	161
SfuI	TTCGAA	1 cut(s)	781
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	2 cut(s)	45, 84
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	7 cut(s)	3, 186, 203, 286, 332, 452, 820
SseBI	AGGCCT	1 cut(s)	685
SsiI	CCGC	1 cut(s)	636
SspI	AATATT	1 cut(s)	805
SspMI	CTAG	2 cut(s)	129, 726
StuI	AGGCCT	1 cut(s)	685
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	2 cut(s)	531, 794
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	665
TaqI	TCGA	1 cut(s)	781
TasI	AATT	7 cut(s)	3, 186, 203, 286, 332, 452, 820
TatI	WGTACW	1 cut(s)	881
TfiI	GAWTC	5 cut(s)	50, 412, 428, 602, 734
Tru1I	TTAA	5 cut(s)	45, 240, 258, 948, 975
Tru9I	TTAA	5 cut(s)	45, 240, 258, 948, 975
TscAI	CASTG	3 cut(s)	27, 391, 960
TseFI	GTSAC	2 cut(s)	721, 844
TseI	GCWGC	1 cut(s)	545
Tsp45I	GTSAC	2 cut(s)	721, 844
TspDTI	ATGAA	6 cut(s)	63, 188, 216, 438, 669, 833
TspRI	CASTG	3 cut(s)	27, 391, 960
VpaK11BI	GGWCC	1 cut(s)	89
VspI	ATTAAT	1 cut(s)	45
XapI	RAATTY	1 cut(s)	820
XceI	RCATGY	1 cut(s)	675
XspI	CTAG	2 cut(s)	129, 726
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.