Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003150

Physical Location & Seq

Genomic Coordinates Reverse (-)

67181579 .. 67187342

Gene Structure 5764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG463900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGAAGCAGTGTTTGTGGTTGAGGGGAATGATGAAGGGAAGTGTGAGGAGATTGGAGTTGAGAAAAGTAGCTCGTCTTTGTCTTCTCCAAAGCAGATCACCGATCCTGTTGTCTACAAGCTCGTTCGGGTTGAAGGTGATGGGAGATTAGTGCCAGCAACAGATGATGAAGTAATGGAGGTTGAGGATTTTCTTGTTGATGAGCAGATCGAATTGCCTGTTGTTATGAGCACGGGAACTGTCGAGTGCATTTCTAATGAATCTTCATCTGGGAAGCCTCAGAAAGAAAGCTCAGAAGGTCTGTCACCTTCAGAGGGTAAAGAAGCTGATGCAAAACTAAGTGCACATCTTGAGGAAATTGCTCCTTCGTCATCACTGAGCTTAGATGTCAGCCACATTAATGAATCTGAGACAAAAGGGGAGTGCTCAAAACATCCAGATGGACCAATAGAAAGCGTATCATCAGCTTCTGCTGTCTGCACTAGTTCAAAGCGTGATTTTTATGCATCAAACAGGGAGATATGCCTGGACAACCTATCAATTAGAGAACTTCATGAATTATTTAGAGCAACCTTTGGGCGAGAAACTACTGTTAAGGACAAGCTCTGGCTTAAAAGGAGGATCGCGATGGGATTGACTAATTCTTGTGATGTTTCAACCACAACTTTCACTATTATAAATAAGAAATTGGTGAAGAATGGCAAAGACAATAGCTTGCAGAATGCTCATGATATGCACACTGAGGGTTCTGATGTTGGAGCAAAGAATCTTGGGTATGAAGATTCACCAAAAAGCCACAATAGCCAATTAGAAAATCATCAAGTTGTTTCAGCCAAGAGATCGGGAAGCCTTAGTGAAGAAGAATATGGCTGTGAGGATCATACCATGGATCAGAGAGCTGCCAAGAGAGTTCGGAAGCCCACTAAGCGATACATTGAAGAACTTTCTGAAGTGGAATCAAGAGATCATAGCCCAAAAGTGATTAGTTCCGCTAAAACTGCTGGACATGAAGAAACGTCTCCAACATGTTCTGCAAGGCCTCTTAGAAATGTCTCTACAAATGAGAGAACTATTGTCACTAGGTTGGATTCTCTTGGTGGATCTGGGGTTCAGGTTCCTTATGTTTCTCGGGTTCGAAGAAGCCGTCCAAGGAAAAATATTATGGCTCTTATGAATTTCAATCCAAGTGGAATGGGTGTGACAGCTAAACTGGTAAAAGAGACCCTTGCTGTGTGTACTTCTCTTCCAGAGAGTGAGTGTGCAGACAAAGTTTTGAAAGCCAGATCTGCTTCTGAACAGATTAAGCCACTGGTAAGATCTTTGTTGTTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

444

Amino Acids

48.59

Weight (kDa)

5.63

Isoelectric Point (pI)

62.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17460 AT1G17460 AT1G17460 AT1G72650 AT1G72650
fragaria_vesca	FvH4_6g34560 FvH4_6g34560 FvH4_6g34560 FvH4_6g34560 FvH4_6g34560
malus_domestica	MD09G1184800.v1.1 MD17G1168700.v1.1
prunus_persica	Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1
pyrus_communis	pycom09g10240 pycom17g16720
rosa_chinensis	RchiOBHm_Chr2g0145091
rosa_laevigata	RLG00000020124
rosa_multiflora	Rmu_co8219288.1_g000001 Rmu_co8448595.1_g000001 Rmu_sc0027368.1_g000001
rosa_roxburghii	Rroxscaffold_2G00100880
rosa_rugosa	Rorug02G0390200 Rorug02G0390200 Rorug02G0390300 Rorug02G0390300 Rorug02G0390300 Rorug02G0390300
rosa_samantha	Rh2AG442900 Rh2BG453900 Rh2CG429900 Rh2DG463900
rosa_wichuraiana	Rw2G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	677
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	626
AciI	CCGC	1 cut(s)	990
AclWI	GGATC	5 cut(s)	98, 629, 885, 897, 1108
AcsI	RAATTY	1 cut(s)	1174
AcuI	CTGAAG	2 cut(s)	294, 969
AfaI	GTAC	1 cut(s)	1237
AfiI	CCNNNNNNNGG	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	1025
AgsI	TTSAA	6 cut(s)	134, 489, 657, 938, 1180, 1276
AhlI	ACTAGT	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	525
AloI	GAACNNNNNNTCC	2 cut(s)	1092, 1124
Alw21I	GWGCWC	3 cut(s)	233, 346, 428
Alw26I	GTCTC	4 cut(s)	404, 1023, 1057, 1214
Alw44I	GTGCAC	1 cut(s)	342
AlwI	GGATC	5 cut(s)	98, 629, 885, 897, 1108
AlwNI	CAGNNNCTG	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	1128
AoxI	GGCC	1 cut(s)	1037
ApaLI	GTGCAC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	899
ApoI	RAATTY	1 cut(s)	1174
ArsI	GACNNNNNNTTYG	2 cut(s)	1129, 1161
AseI	ATTAAT	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	443
AsuHPI	GGTGA	5 cut(s)	91, 149, 297, 703, 777
AsuII	TTCGAA	1 cut(s)	1135
AvaI	CYCGRG	1 cut(s)	1128
AvaII	GGWCC	1 cut(s)	443
BaeGI	GKGCMC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	3 cut(s)	233, 346, 428
BbvI	GCAGC	1 cut(s)	886
BccI	CCATC	3 cut(s)	134, 434, 622
BceAI	ACGGC	1 cut(s)	1128
BciT130I	CCWGG	1 cut(s)	527
BcoDI	GTCTC	4 cut(s)	404, 1023, 1057, 1214
BcuI	ACTAGT	1 cut(s)	482
BfaI	CTAG	2 cut(s)	483, 1080
BglII	AGATCT	2 cut(s)	1283, 1316
BisI	GCNGC	1 cut(s)	900
BlsI	GCNGC	1 cut(s)	901
Bme1390I	CCNGG	1 cut(s)	527
Bme18I	GGWCC	1 cut(s)	443
BmeT110I	CYCGRG	1 cut(s)	1128
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	1116
BmrFI	CCNGG	1 cut(s)	527
BmsI	GCATC	2 cut(s)	319, 515
BpiI	GAAGAC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	1135
BpuEI	CTTGAG	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	1214
BsaJI	CCNNGG	2 cut(s)	885, 1148
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	1215, 1314
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	2 cut(s)	885, 1148
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	5 cut(s)	293, 306, 368, 399, 732
BseNI	ACTGG	2 cut(s)	1215, 1314
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	1 cut(s)	886
BsgI	GTGCAG	2 cut(s)	463, 1281
Bsh1236I	CGCG	1 cut(s)	626
BshFI	GGCC	1 cut(s)	1039
BsiHKAI	GWGCWC	3 cut(s)	233, 346, 428
BsiHKCI	CYCGRG	1 cut(s)	1128
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	4 cut(s)	404, 1023, 1057, 1214
BsmBI	CGTCTC	1 cut(s)	1023
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	1 cut(s)	1039
Bso31I	GGTCTC	1 cut(s)	1214
BsoBI	CYCGRG	1 cut(s)	1128
Bsp119I	TTCGAA	1 cut(s)	1135
Bsp1286I	GDGCHC	3 cut(s)	233, 346, 428
Bsp19I	CCATGG	1 cut(s)	885
Bsp68I	TCGCGA	1 cut(s)	626
BspACI	CCGC	1 cut(s)	990
BspANI	GGCC	1 cut(s)	1039
BspCNI	CTCAG	5 cut(s)	292, 305, 369, 400, 733
BspFNI	CGCG	1 cut(s)	626
BspHI	TCATGA	2 cut(s)	553, 727
BspLI	GGNNCC	1 cut(s)	1116
BspPI	GGATC	5 cut(s)	98, 629, 885, 897, 1108
BspT104I	TTCGAA	1 cut(s)	1135
BspTNI	GGTCTC	1 cut(s)	1214
BsrI	ACTGG	2 cut(s)	1215, 1314
BssECI	CCNNGG	2 cut(s)	885, 1148
BssT1I	CCWWGG	2 cut(s)	885, 1148
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	2 cut(s)	241, 592
Bst6I	CTCTTC	1 cut(s)	1248
BstBI	TTCGAA	1 cut(s)	1135
BstC8I	GCNNGC	2 cut(s)	156, 716
BstDSI	CCRYGG	1 cut(s)	885
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	626
BstMAI	GTCTC	4 cut(s)	404, 1023, 1057, 1214
BstMWI	GCNNNNNNNGC	4 cut(s)	801, 925, 998, 1286
BstNI	CCWGG	1 cut(s)	527
BstNSI	RCATGY	1 cut(s)	1029
BstSCI	CCNGG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	1 cut(s)	886
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	3 cut(s)	1100, 1283, 1316
BstYI	RGATCY	3 cut(s)	1100, 1283, 1316
BsuRI	GGCC	1 cut(s)	1039
BtgI	CCRYGG	1 cut(s)	885
BtgZI	GCGATG	1 cut(s)	641
BtsCI	GGATG	1 cut(s)	433
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	4 cut(s)	15, 374, 738, 1307
BtuMI	TCGCGA	1 cut(s)	626
Cac8I	GCNNGC	2 cut(s)	156, 716
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	2 cut(s)	553, 727
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	1236
CspCI	CAANNNNNGTGG	2 cut(s)	1168, 1203
CviAII	CATG	5 cut(s)	554, 728, 886, 1007, 1026
CviQI	GTAC	1 cut(s)	1236
Eam1104I	CTCTTC	1 cut(s)	1248
EarI	CTCTTC	1 cut(s)	1248
Eco130I	CCWWGG	2 cut(s)	885, 1148
Eco147I	AGGCCT	1 cut(s)	1039
Eco31I	GGTCTC	1 cut(s)	1214
Eco47I	GGWCC	1 cut(s)	443
Eco57I	CTGAAG	2 cut(s)	294, 969
Eco88I	CYCGRG	1 cut(s)	1128
EcoRII	CCWGG	1 cut(s)	525
EcoT14I	CCWWGG	2 cut(s)	885, 1148
EcoT22I	ATGCAT	1 cut(s)	508
ErhI	CCWWGG	2 cut(s)	885, 1148
Esp3I	CGTCTC	1 cut(s)	1023
FaeI	CATG	5 cut(s)	557, 731, 889, 1010, 1029
FalI	AAGNNNNNCTT	2 cut(s)	1209, 1241
FatI	CATG	5 cut(s)	553, 727, 885, 1006, 1025
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	900
FokI	GGATG	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	900
FspBI	CTAG	2 cut(s)	483, 1080
GluI	GCNGC	1 cut(s)	900
HaeIII	GGCC	1 cut(s)	1039
Hin1II	CATG	5 cut(s)	557, 731, 889, 1010, 1029
HinfI	GANTC	6 cut(s)	260, 404, 766, 782, 956, 1088
HphI	GGTGA	5 cut(s)	91, 149, 297, 703, 777
Hpy166II	GTNNAC	3 cut(s)	115, 344, 1236
Hpy188I	TCNGA	9 cut(s)	282, 295, 313, 409, 751, 894, 915, 949, 1294
Hpy188III	TCNNGA	8 cut(s)	350, 437, 554, 625, 728, 843, 960, 1247
Hpy8I	GTNNAC	3 cut(s)	115, 344, 1236
HpyAV	CCTTC	5 cut(s)	29, 128, 290, 318, 375
HpyCH4III	ACNGT	2 cut(s)	241, 592
HpyCH4IV	ACGT	1 cut(s)	1016
HpyCH4V	TGCA	9 cut(s)	249, 332, 344, 480, 506, 718, 736, 1034, 1262
HpyF10VI	GCNNNNNNNGC	4 cut(s)	801, 925, 998, 1286
HpySE526I	ACGT	1 cut(s)	1016
Hsp92II	CATG	5 cut(s)	557, 731, 889, 1010, 1029
LmnI	GCTCC	2 cut(s)	367, 758
Lsp1109I	GCAGC	1 cut(s)	886
LweI	GCATC	2 cut(s)	319, 515
MaeI	CTAG	2 cut(s)	483, 1080
MaeII	ACGT	1 cut(s)	1016
MaeIII	GTNAC	3 cut(s)	303, 1075, 1198
MflI	RGATCY	3 cut(s)	1100, 1283, 1316
MhlI	GDGCHC	3 cut(s)	233, 346, 428
MluCI	AATT	8 cut(s)	212, 357, 540, 557, 640, 686, 806, 1174
MmeI	TCCRAC	3 cut(s)	736, 1046, 1065
Mph1103I	ATGCAT	1 cut(s)	508
MseI	TTAA	5 cut(s)	399, 594, 612, 1302, 1329
MslI	CAYNNNNRTG	2 cut(s)	399, 438
MspR9I	CCNGG	1 cut(s)	527
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	1 cut(s)	527
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	4 cut(s)	801, 925, 998, 1286
NcoI	CCATGG	1 cut(s)	885
NlaIII	CATG	5 cut(s)	557, 731, 889, 1010, 1029
NlaIV	GGNNCC	1 cut(s)	1116
NmuCI	GTSAC	3 cut(s)	303, 1075, 1198
NruI	TCGCGA	1 cut(s)	626
NsiI	ATGCAT	1 cut(s)	508
NspI	RCATGY	1 cut(s)	1029
NspV	TTCGAA	1 cut(s)	1135
PagI	TCATGA	2 cut(s)	553, 727
PceI	AGGCCT	1 cut(s)	1039
PciI	ACATGT	1 cut(s)	1025
PcsI	WCGNNNNNNNCGW	1 cut(s)	1141
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	6 cut(s)	260, 404, 766, 782, 956, 1088
PkrI	GCNGC	1 cut(s)	901
PscI	ACATGT	1 cut(s)	1025
PshBI	ATTAAT	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	677
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	1 cut(s)	1116
PspPI	GGNCC	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	3 cut(s)	1100, 1283, 1316
RruI	TCGCGA	1 cut(s)	626
RsaI	GTAC	1 cut(s)	1237
RsaNI	GTAC	1 cut(s)	1236
RseI	CAYNNNNRTG	2 cut(s)	399, 438
SaqAI	TTAA	5 cut(s)	399, 594, 612, 1302, 1329
SatI	GCNGC	1 cut(s)	900
Sau96I	GGNCC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	527
SduI	GDGCHC	3 cut(s)	233, 346, 428
SfaNI	GCATC	2 cut(s)	319, 515
SfuI	TTCGAA	1 cut(s)	1135
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	2 cut(s)	399, 438
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SpeI	ACTAGT	1 cut(s)	482
Sse9I	AATT	8 cut(s)	212, 357, 540, 557, 640, 686, 806, 1174
SseBI	AGGCCT	1 cut(s)	1039
SsiI	CCGC	1 cut(s)	990
SspI	AATATT	1 cut(s)	1159
SspMI	CTAG	2 cut(s)	483, 1080
StuI	AGGCCT	1 cut(s)	1039
StyD4I	CCNGG	1 cut(s)	525
StyI	CCWWGG	2 cut(s)	885, 1148
TaaI	ACNGT	2 cut(s)	241, 592
TaiI	ACGT	1 cut(s)	1019
TaqI	TCGA	3 cut(s)	210, 243, 1135
TasI	AATT	8 cut(s)	212, 357, 540, 557, 640, 686, 806, 1174
TatI	WGTACW	1 cut(s)	1235
TfiI	GAWTC	6 cut(s)	260, 404, 766, 782, 956, 1088
Tru1I	TTAA	5 cut(s)	399, 594, 612, 1302, 1329
Tru9I	TTAA	5 cut(s)	399, 594, 612, 1302, 1329
TscAI	CASTG	4 cut(s)	15, 381, 745, 1314
TseFI	GTSAC	3 cut(s)	303, 1075, 1198
TseI	GCWGC	1 cut(s)	899
Tsp45I	GTSAC	3 cut(s)	303, 1075, 1198
TspRI	CASTG	4 cut(s)	15, 381, 745, 1314
VneI	GTGCAC	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	443
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	1 cut(s)	1174
XceI	RCATGY	1 cut(s)	1029
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	2 cut(s)	483, 1080
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.