Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003150

Physical Location & Seq

Genomic Coordinates Reverse (-)

65506080 .. 65512264

Gene Structure 6185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG442900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGTTAGTCCACACTAAACACAGCGTACTAAAAAAGCGAGCCAAAAATTACAACACCAATCCGATTGGTTTTGGTTTCCCCTTTCCCATTAAAACCTTCTCCCACAATTTTACCAAACGACTCGTTTCCCCAAACTCACTCCTCTCTCCCTCGCTTTCCTTTGAATCAACTCGGTCGCTACTCACTCAGTCCTATGTGTTTGTGGTTGAGGGGAATGATGAAGGGAAGTGTGAGGAGAGTGGAGTTGAGAAAAGTAGCTCGTCTTTGTCTTCTCCAAAGCAGATCACCGATCCTGTTGTCTACAAGCTCGTTCGGGTTGAAGGTGATGGGAGATTAGTGCCAGCAACAGATGATGAAGTAATGGAGGTTGAGGATTTTCTTGTTGATGAGCAGATCGAATTGCCTGTTGTTATGAGCACAGGAACTGTTGAGTGCATTTCTAATGAATCTTCATCTGGGAAGCCTCAGAAAGAAAGCTCAGAAGGTCTGTCACCTTCAGAGGGTAAAGAAGCTGATGCAAAACTAAGTGCACATCTTGAGGAAATTGCTCCTTCGTCATCATTGAGCTTAGATGCCAGCCACATTAACGAATCTGAGACAAAAGGGGAGTGCTCAAAACATCCAGATGGACCAATAGAAAGCGTATCATCAGCTTCTGCTGTCTGCACTAGTTCAAAGCGTGATTTTTATGCATCAAACAGGGAGATATGCCTGGACAACCTATCAATAAGAGAACTTCATGAATTATTTAGAGCAACCTTTGGGCGAGAAACTACTGTTAAGGACAAGCTCTGGCTTAAGAGGAGGATCGCGATGGGATTGACTAATTCTTGTGATGTTTCAACCACAACTTTCACTATTATAAATAAGAAATTGGTGAAGAACGGCAAAGACAATAGCTTGCAGAATGCTCATGATATGCACACTGAGGGTTCTGATGTTGGAGCAAAGAATCTTGGGTATGAAGATTCACCAAAAAGCCACAATAGCCAATTAGAAAATCATCAAGTTGTTTCAGCCAAGAGATCGGGAAGCCTTAGTGAAGAAGAATATGGCTGTGAGGATCATACCATGGATCAGAGAGCTGCCAAGAGAGTTCGGAAGCCCACTAAGCGATACATTGAAGAACTTTCTGAAGTGGAATCAAGAGATCATAGCCCAAAAGTGATTAGTTCCGCTAAAACTGCTGGACATGAAGAAACGTCTCCAACATGTTCTGCAAGGCCTCTTAGAAATGTCTCTACAAATGAGAGAACTATTGTCACTAGGTTGGATTCTCTTGGTGGATCTGGGGTTCAGGTTCCTTATGTTTCTCGGGTTCGAAGAAGCCGTCCGAGGAAAAATATTATGGCTCTTATGGTAGGTAAAATCAATATCATACCTAGGCATTGTGATTTTTGCTTTGTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

470

Amino Acids

51.93

Weight (kDa)

6.59

Isoelectric Point (pI)

62.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17460 AT1G17460 AT1G17460 AT1G72650 AT1G72650
fragaria_vesca	FvH4_6g34560 FvH4_6g34560 FvH4_6g34560 FvH4_6g34560 FvH4_6g34560
malus_domestica	MD09G1184800.v1.1 MD17G1168700.v1.1
prunus_persica	Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1 Prupe.3G042900_v2.0.a1
pyrus_communis	pycom09g10240 pycom17g16720
rosa_chinensis	RchiOBHm_Chr2g0145091
rosa_laevigata	RLG00000020124
rosa_multiflora	Rmu_co8219288.1_g000001 Rmu_co8448595.1_g000001 Rmu_sc0027368.1_g000001
rosa_roxburghii	Rroxscaffold_2G00100880
rosa_rugosa	Rorug02G0390200 Rorug02G0390200 Rorug02G0390300 Rorug02G0390300 Rorug02G0390300 Rorug02G0390300
rosa_samantha	Rh2AG442900 Rh2BG453900 Rh2CG429900 Rh2DG463900
rosa_wichuraiana	Rw2G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	863
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	812
AciI	CCGC	1 cut(s)	1176
AclWI	GGATC	5 cut(s)	284, 815, 1071, 1083, 1294
AcuI	CTGAAG	2 cut(s)	480, 1155
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	500
AflII	CTTAAG	1 cut(s)	797
AflIII	ACRYGT	1 cut(s)	1211
AgsI	TTSAA	5 cut(s)	164, 320, 675, 843, 1124
AhlI	ACTAGT	1 cut(s)	668
AjnI	CCWGG	1 cut(s)	711
AloI	GAACNNNNNNTCC	2 cut(s)	1278, 1310
AluBI	AGCT	9 cut(s)	258, 307, 477, 512, 567, 653, 790, 900, 1085
AluI	AGCT	9 cut(s)	258, 307, 477, 512, 567, 653, 790, 900, 1085
Alw21I	GWGCWC	3 cut(s)	419, 532, 614
Alw26I	GTCTC	3 cut(s)	590, 1209, 1243
Alw44I	GTGCAC	1 cut(s)	528
AlwI	GGATC	5 cut(s)	284, 815, 1071, 1083, 1294
AlwNI	CAGNNNCTG	2 cut(s)	425, 656
Ama87I	CYCGRG	1 cut(s)	1314
AoxI	GGCC	1 cut(s)	1223
ApaLI	GTGCAC	1 cut(s)	528
ApeKI	GCWGC	1 cut(s)	1085
ArsI	GACNNNNNNTTYG	2 cut(s)	1315, 1347
AspA2I	CCTAGG	1 cut(s)	1382
AspS9I	GGNCC	1 cut(s)	629
AsuHPI	GGTGA	5 cut(s)	277, 335, 483, 889, 963
AsuII	TTCGAA	1 cut(s)	1321
AvaI	CYCGRG	1 cut(s)	1314
AvaII	GGWCC	1 cut(s)	629
AvrII	CCTAGG	1 cut(s)	1382
BaeGI	GKGCMC	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	3 cut(s)	419, 532, 614
BbvI	GCAGC	1 cut(s)	1072
BccI	CCATC	3 cut(s)	320, 620, 808
BceAI	ACGGC	2 cut(s)	901, 1314
BciT130I	CCWGG	1 cut(s)	713
BcoDI	GTCTC	3 cut(s)	590, 1209, 1243
BcuI	ACTAGT	1 cut(s)	668
BfaI	CTAG	3 cut(s)	669, 1266, 1383
BfrI	CTTAAG	1 cut(s)	797
BisI	GCNGC	1 cut(s)	1086
BlnI	CCTAGG	1 cut(s)	1382
BlsI	GCNGC	1 cut(s)	1087
Bme1390I	CCNGG	1 cut(s)	713
Bme18I	GGWCC	1 cut(s)	629
BmeT110I	CYCGRG	1 cut(s)	1314
BmgT120I	GGNCC	1 cut(s)	629
BmiI	GGNNCC	1 cut(s)	1302
BmrFI	CCNGG	1 cut(s)	713
BmsI	GCATC	3 cut(s)	505, 562, 701
BpiI	GAAGAC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	1321
BpuEI	CTTGAG	1 cut(s)	557
BsaJI	CCNNGG	3 cut(s)	1071, 1334, 1382
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
BseBI	CCWGG	1 cut(s)	713
BseDI	CCNNGG	3 cut(s)	1071, 1334, 1382
BseGI	GGATG	1 cut(s)	619
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	5 cut(s)	200, 479, 492, 585, 918
BseRI	GAGGAG	3 cut(s)	131, 248, 817
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	1 cut(s)	1072
BsgI	GTGCAG	1 cut(s)	649
Bsh1236I	CGCG	1 cut(s)	812
Bsh1285I	CGRYCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	1225
BsiEI	CGRYCG	1 cut(s)	176
BsiHKAI	GWGCWC	3 cut(s)	419, 532, 614
BsiHKCI	CYCGRG	1 cut(s)	1314
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	3 cut(s)	590, 1209, 1243
BsmBI	CGTCTC	1 cut(s)	1209
BsmI	GAATGC	1 cut(s)	913
BsnI	GGCC	1 cut(s)	1225
BsoBI	CYCGRG	1 cut(s)	1314
Bsp119I	TTCGAA	1 cut(s)	1321
Bsp1286I	GDGCHC	3 cut(s)	419, 532, 614
Bsp143I	GATC	9 cut(s)	282, 289, 393, 807, 1025, 1063, 1075, 1150, 1286
Bsp19I	CCATGG	1 cut(s)	1071
Bsp68I	TCGCGA	1 cut(s)	812
BspACI	CCGC	1 cut(s)	1176
BspANI	GGCC	1 cut(s)	1225
BspCNI	CTCAG	5 cut(s)	199, 478, 491, 586, 919
BspFNI	CGCG	1 cut(s)	812
BspHI	TCATGA	2 cut(s)	739, 913
BspLI	GGNNCC	1 cut(s)	1302
BspPI	GGATC	5 cut(s)	284, 815, 1071, 1083, 1294
BspT104I	TTCGAA	1 cut(s)	1321
BspTI	CTTAAG	1 cut(s)	797
BssECI	CCNNGG	3 cut(s)	1071, 1334, 1382
BssMI	GATC	9 cut(s)	282, 289, 393, 807, 1025, 1063, 1075, 1150, 1286
BssT1I	CCWWGG	2 cut(s)	1071, 1382
Bst2UI	CCWGG	1 cut(s)	713
Bst4CI	ACNGT	2 cut(s)	427, 778
BstAFI	CTTAAG	1 cut(s)	797
BstBI	TTCGAA	1 cut(s)	1321
BstC8I	GCNNGC	4 cut(s)	39, 342, 577, 902
BstDSI	CCRYGG	1 cut(s)	1071
BstF5I	GGATG	1 cut(s)	619
BstFNI	CGCG	1 cut(s)	812
BstKTI	GATC	9 cut(s)	285, 292, 396, 810, 1028, 1066, 1078, 1153, 1289
BstMAI	GTCTC	3 cut(s)	590, 1209, 1243
BstMBI	GATC	9 cut(s)	282, 289, 393, 807, 1025, 1063, 1075, 1150, 1286
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	3 cut(s)	987, 1111, 1184
BstNI	CCWGG	1 cut(s)	713
BstNSI	RCATGY	1 cut(s)	1215
BstSCI	CCNGG	1 cut(s)	711
BstSLI	GKGCMC	1 cut(s)	532
BstUI	CGCG	1 cut(s)	812
BstV1I	GCAGC	1 cut(s)	1072
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	1286
BstYI	RGATCY	1 cut(s)	1286
BsuRI	GGCC	1 cut(s)	1225
BtgI	CCRYGG	1 cut(s)	1071
BtgZI	GCGATG	1 cut(s)	827
BtsCI	GGATG	1 cut(s)	619
BtsIMutI	CAGTG	1 cut(s)	924
BtuMI	TCGCGA	1 cut(s)	812
Cac8I	GCNNGC	4 cut(s)	39, 342, 577, 902
CaiI	CAGNNNCTG	2 cut(s)	425, 656
CciI	TCATGA	2 cut(s)	739, 913
Cfr13I	GGNCC	1 cut(s)	629
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	5 cut(s)	740, 914, 1072, 1193, 1212
CviQI	GTAC	1 cut(s)	26
DpnI	GATC	9 cut(s)	284, 291, 395, 809, 1027, 1065, 1077, 1152, 1288
DpnII	GATC	9 cut(s)	282, 289, 393, 807, 1025, 1063, 1075, 1150, 1286
Eco130I	CCWWGG	2 cut(s)	1071, 1382
Eco147I	AGGCCT	1 cut(s)	1225
Eco47I	GGWCC	1 cut(s)	629
Eco57I	CTGAAG	2 cut(s)	480, 1155
Eco88I	CYCGRG	1 cut(s)	1314
EcoRII	CCWGG	1 cut(s)	711
EcoT14I	CCWWGG	2 cut(s)	1071, 1382
EcoT22I	ATGCAT	1 cut(s)	694
ErhI	CCWWGG	2 cut(s)	1071, 1382
Esp3I	CGTCTC	1 cut(s)	1209
FaeI	CATG	5 cut(s)	743, 917, 1075, 1196, 1215
FatI	CATG	5 cut(s)	739, 913, 1071, 1192, 1211
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	1086
FokI	GGATG	1 cut(s)	606
Fsp4HI	GCNGC	1 cut(s)	1086
FspBI	CTAG	3 cut(s)	669, 1266, 1383
GluI	GCNGC	1 cut(s)	1086
HaeIII	GGCC	1 cut(s)	1225
Hin1II	CATG	5 cut(s)	743, 917, 1075, 1196, 1215
HinfI	GANTC	8 cut(s)	120, 164, 446, 590, 952, 968, 1142, 1274
HphI	GGTGA	5 cut(s)	277, 335, 483, 889, 963
Hpy166II	GTNNAC	3 cut(s)	10, 301, 530
Hpy188III	TCNNGA	7 cut(s)	536, 623, 740, 811, 914, 1029, 1146
Hpy8I	GTNNAC	3 cut(s)	10, 301, 530
HpyAV	CCTTC	6 cut(s)	106, 215, 314, 476, 504, 561
HpyCH4III	ACNGT	2 cut(s)	427, 778
HpyCH4IV	ACGT	1 cut(s)	1202
HpyCH4V	TGCA	8 cut(s)	435, 518, 530, 666, 692, 904, 922, 1220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	987, 1111, 1184
HpySE526I	ACGT	1 cut(s)	1202
Hsp92II	CATG	5 cut(s)	743, 917, 1075, 1196, 1215
Kzo9I	GATC	9 cut(s)	282, 289, 393, 807, 1025, 1063, 1075, 1150, 1286
LmnI	GCTCC	2 cut(s)	553, 944
Lsp1109I	GCAGC	1 cut(s)	1072
LweI	GCATC	3 cut(s)	505, 562, 701
MaeI	CTAG	3 cut(s)	669, 1266, 1383
MaeII	ACGT	1 cut(s)	1202
MaeIII	GTNAC	2 cut(s)	489, 1261
MalI	GATC	9 cut(s)	284, 291, 395, 809, 1027, 1065, 1077, 1152, 1288
MboI	GATC	9 cut(s)	282, 289, 393, 807, 1025, 1063, 1075, 1150, 1286
MboII	GAAGA	9 cut(s)	261, 441, 892, 977, 1055, 1058, 1136, 1208, 1335
MflI	RGATCY	1 cut(s)	1286
MhlI	GDGCHC	3 cut(s)	419, 532, 614
MluCI	AATT	8 cut(s)	46, 106, 398, 543, 743, 826, 872, 992
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	3 cut(s)	922, 1232, 1251
Mph1103I	ATGCAT	1 cut(s)	694
MseI	TTAA	4 cut(s)	90, 585, 780, 798
MslI	CAYNNNNRTG	1 cut(s)	624
MspCI	CTTAAG	1 cut(s)	797
MspR9I	CCNGG	1 cut(s)	713
Mva1269I	GAATGC	1 cut(s)	913
MvaI	CCWGG	1 cut(s)	713
MvnI	CGCG	1 cut(s)	812
MwoI	GCNNNNNNNGC	3 cut(s)	987, 1111, 1184
NcoI	CCATGG	1 cut(s)	1071
NdeII	GATC	9 cut(s)	282, 289, 393, 807, 1025, 1063, 1075, 1150, 1286
NlaIII	CATG	5 cut(s)	743, 917, 1075, 1196, 1215
NlaIV	GGNNCC	1 cut(s)	1302
NmuCI	GTSAC	2 cut(s)	489, 1261
NruI	TCGCGA	1 cut(s)	812
NsiI	ATGCAT	1 cut(s)	694
NspI	RCATGY	1 cut(s)	1215
NspV	TTCGAA	1 cut(s)	1321
PagI	TCATGA	2 cut(s)	739, 913
PceI	AGGCCT	1 cut(s)	1225
PciI	ACATGT	1 cut(s)	1211
PcsI	WCGNNNNNNNCGW	1 cut(s)	1327
PctI	GAATGC	1 cut(s)	913
PfeI	GAWTC	7 cut(s)	164, 446, 590, 952, 968, 1142, 1274
PkrI	GCNGC	1 cut(s)	1087
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PscI	ACATGT	1 cut(s)	1211
PsiI	TTATAA	1 cut(s)	863
Psp6I	CCWGG	1 cut(s)	711
PspGI	CCWGG	1 cut(s)	711
PspN4I	GGNNCC	1 cut(s)	1302
PspPI	GGNCC	1 cut(s)	629
PstNI	CAGNNNCTG	2 cut(s)	425, 656
PsuI	RGATCY	1 cut(s)	1286
RruI	TCGCGA	1 cut(s)	812
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	624
SaqAI	TTAA	4 cut(s)	90, 585, 780, 798
SatI	GCNGC	1 cut(s)	1086
Sau3AI	GATC	9 cut(s)	282, 289, 393, 807, 1025, 1063, 1075, 1150, 1286
Sau96I	GGNCC	1 cut(s)	629
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	713
SduI	GDGCHC	3 cut(s)	419, 532, 614
SfaNI	GCATC	3 cut(s)	505, 562, 701
SfuI	TTCGAA	1 cut(s)	1321
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	624
SmlI	CTYRAG	2 cut(s)	536, 797
SmoI	CTYRAG	2 cut(s)	536, 797
SpeI	ACTAGT	1 cut(s)	668
Sse9I	AATT	8 cut(s)	46, 106, 398, 543, 743, 826, 872, 992
SseBI	AGGCCT	1 cut(s)	1225
SsiI	CCGC	1 cut(s)	1176
SspI	AATATT	1 cut(s)	1345
SspMI	CTAG	3 cut(s)	669, 1266, 1383
StuI	AGGCCT	1 cut(s)	1225
StyD4I	CCNGG	1 cut(s)	711
StyI	CCWWGG	2 cut(s)	1071, 1382
TaaI	ACNGT	2 cut(s)	427, 778
TaiI	ACGT	1 cut(s)	1205
TaqI	TCGA	2 cut(s)	396, 1321
TaqII	GACCGA	1 cut(s)	162
TasI	AATT	8 cut(s)	46, 106, 398, 543, 743, 826, 872, 992
TfiI	GAWTC	7 cut(s)	164, 446, 590, 952, 968, 1142, 1274
Tru1I	TTAA	4 cut(s)	90, 585, 780, 798
Tru9I	TTAA	4 cut(s)	90, 585, 780, 798
TscAI	CASTG	1 cut(s)	931
TseFI	GTSAC	2 cut(s)	489, 1261
TseI	GCWGC	1 cut(s)	1085
Tsp45I	GTSAC	2 cut(s)	489, 1261
TspDTI	ATGAA	8 cut(s)	234, 369, 441, 459, 728, 756, 978, 1209
TspRI	CASTG	1 cut(s)	931
Vha464I	CTTAAG	1 cut(s)	797
VneI	GTGCAC	1 cut(s)	528
VpaK11BI	GGWCC	1 cut(s)	629
XceI	RCATGY	1 cut(s)	1215
XmaJI	CCTAGG	1 cut(s)	1382
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	3 cut(s)	669, 1266, 1383
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.