Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002506.1

Orthogroup ID

OG0005411

Physical Location & Seq

Genomic Coordinates Forward (+)

106474 .. 111686

Gene Structure 5213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002506.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atgtcgtttatcctcccttgtagcattagcggcaacttgaaaagtagaaaacggttggatgtgagagacaatgggaagaaaaaaccaatggcgggtgtacttccttgttcatcatcaactctctctctactaactccactcaatttccattctcaagagcaatgcagagctttgtattctcaatctttaagcacccaaaggtgtggcctttttgtttgtgctgccaagaagaaagttagtttcacagaccaaattcttgattacattgaggggggtcctaagttgaggaaatggtatggggcacctgaacttttacctaaggatgggtctgttgctgaagatgaggacgaattatcagaaggagatgaaaccagggatgctgttttggtaactgacggagatagcgagatggggcagatggtaatattgtcattgattgtcaaaagagctagagtaaaagcattggtgaaggataagcgggctgcccttgaagcatttggaacttatgttgagtcattgactggagattcaagggacaagccattcctaaggagagtgctgagaggagtttccacagtaatatgcccaaatgaaggtttcttatctactgttgggagcttgaaaggggtaaaccatgtcattctcttatctcagttgtctgtttacaaaggtgccggtggcattcaagctctcatgaaaagcaatgcaagaaaattagccgaagaagatgagtcaatactgatggcctcaggaatcccttacaccatcatcagggctggctcgttacaaaattctccaggtggaactcagggctttagctttgaaaagggaactgccgcaaaaggaactcttagcaaagaggatgcagcctttatttgtgtggaagcagttgatgcagtccccaaggaaagattcatatttgaggtggtgaatggagatgacaaggtttcagattggaaagaatgtttgaatagactaatggagaaatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

330

Amino Acids

35.88

Weight (kDa)

8.32

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72640 AT1G72640 AT1G72640 AT1G72640
fragaria_vesca	FvH4_6g34590
malus_domestica	MD09G1184500.v1.1
prunus_persica	Prupe.3G042700_v2.0.a1 Prupe.3G042700_v2.0.a1 Prupe.3G042700_v2.0.a1
pyrus_communis	pycom09g10220
rosa_chinensis	RchiOBHm_Chr2g0145111 RchiOBHm_Chr3g0497381 RchiOBHm_Chr6g0307231
rosa_laevigata	RLG00000020125 RLG00000022006 RLG00000026561
rosa_multiflora	Rmu_co8227637.1_g000001 Rmu_sc0002506.1_g000025 Rmu_sc0017273.1_g000010
rosa_roxburghii	Rroxscaffold_2G00100870
rosa_rugosa	Rorug02G0390300 Rorug02G0390400
rosa_samantha	Rh2AG443100 Rh2BG454100 Rh2CG430200 Rh2DG464000 Rh4DG089500
rosa_wichuraiana	Rw1G036560 Rw2G036220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	301, 671
AciI	CCGC	4 cut(s)	30, 92, 478, 837
AcsI	RAATTY	2 cut(s)	252, 790
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	4 cut(s)	92, 323, 593, 771
AgsI	TTSAA	7 cut(s)	40, 491, 531, 622, 686, 824, 970
AjnI	CCWGG	2 cut(s)	371, 796
AjuI	GAANNNNNNNTTGG	2 cut(s)	896, 928
AluBI	AGCT	5 cut(s)	170, 449, 618, 689, 819
AluI	AGCT	5 cut(s)	170, 449, 618, 689, 819
Alw26I	GTCTC	1 cut(s)	60
AoxI	GGCC	2 cut(s)	205, 744
ApeKI	GCWGC	3 cut(s)	221, 482, 866
ApoI	RAATTY	2 cut(s)	252, 790
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	478, 940
AvaII	GGWCC	1 cut(s)	275
AxyI	CCTNAGG	3 cut(s)	318, 548, 748
BaeGI	GKGCMC	1 cut(s)	304
BanI	GGYRCC	2 cut(s)	301, 671
BbvI	GCAGC	3 cut(s)	208, 469, 878
BccI	CCATC	5 cut(s)	317, 403, 412, 736, 773
BciT130I	CCWGG	2 cut(s)	373, 798
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	450
BisI	GCNGC	5 cut(s)	31, 222, 483, 837, 867
BlsI	GCNGC	5 cut(s)	32, 223, 484, 838, 868
Bme1390I	CCNGG	2 cut(s)	373, 798
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	3 cut(s)	276, 303, 673
BmrFI	CCNGG	2 cut(s)	373, 798
BmsI	GCATC	3 cut(s)	367, 853, 883
BpmI	CTGGAG	2 cut(s)	543, 780
BpuEI	CTTGAG	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	372, 903
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 323, 593, 771
Bse118I	RCCGGY	1 cut(s)	674
Bse1I	ACTGG	1 cut(s)	526
Bse21I	CCTNAGG	3 cut(s)	318, 548, 748
Bse3DI	GCAATG	2 cut(s)	167, 709
BseBI	CCWGG	2 cut(s)	373, 798
BseDI	CCNNGG	2 cut(s)	372, 903
BseGI	GGATG	4 cut(s)	64, 328, 382, 868
BseLI	CCNNNNNNNGG	4 cut(s)	92, 323, 593, 771
BseMI	GCAATG	2 cut(s)	167, 709
BseMII	CTCAG	4 cut(s)	551, 665, 762, 821
BseNI	ACTGG	1 cut(s)	526
BseRI	GAGGAG	1 cut(s)	579
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	3 cut(s)	208, 469, 878
BshFI	GGCC	2 cut(s)	207, 746
BshNI	GGYRCC	2 cut(s)	301, 671
BsiSI	CCGG	1 cut(s)	675
BslFI	GGGAC	2 cut(s)	548, 884
BslI	CCNNNNNNNGG	4 cut(s)	92, 323, 593, 771
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	2 cut(s)	548, 884
BsmI	GAATGC	1 cut(s)	681
BsnI	GGCC	2 cut(s)	207, 746
Bsp1286I	GDGCHC	1 cut(s)	304
BspACI	CCGC	4 cut(s)	30, 92, 478, 837
BspANI	GGCC	2 cut(s)	207, 746
BspCNI	CTCAG	4 cut(s)	552, 664, 761, 820
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	3 cut(s)	276, 303, 673
BspT107I	GGYRCC	2 cut(s)	301, 671
BsrDI	GCAATG	2 cut(s)	167, 709
BsrFI	RCCGGY	1 cut(s)	674
BsrI	ACTGG	1 cut(s)	526
BssAI	RCCGGY	1 cut(s)	674
BssECI	CCNNGG	2 cut(s)	372, 903
BssT1I	CCWWGG	1 cut(s)	903
Bst2UI	CCWGG	2 cut(s)	373, 798
Bst4CI	ACNGT	3 cut(s)	54, 577, 610
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstC8I	GCNNGC	2 cut(s)	480, 778
BstDEI	CTNAG	8 cut(s)	279, 318, 548, 560, 651, 748, 807, 851
BstF5I	GGATG	4 cut(s)	64, 328, 382, 868
BstMAI	GTCTC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 491, 893
BstNI	CCWGG	2 cut(s)	373, 798
BstSCI	CCNGG	2 cut(s)	371, 796
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	3 cut(s)	208, 469, 878
BstXI	CCANNNNNNTGG	1 cut(s)	203
Bsu36I	CCTNAGG	3 cut(s)	318, 548, 748
BsuRI	GGCC	2 cut(s)	207, 746
BtsCI	GGATG	4 cut(s)	64, 328, 382, 868
Cac8I	GCNNGC	2 cut(s)	480, 778
CciI	TCATGA	1 cut(s)	693
Cfr10I	RCCGGY	1 cut(s)	674
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	2 cut(s)	635, 694
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	8 cut(s)	279, 318, 548, 560, 651, 748, 807, 851
Eco130I	CCWWGG	1 cut(s)	903
Eco47I	GGWCC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	357
Eco81I	CCTNAGG	3 cut(s)	318, 548, 748
EcoO109I	RGGNCCY	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	371, 796
EcoT14I	CCWWGG	1 cut(s)	903
ErhI	CCWWGG	1 cut(s)	903
FaeI	CATG	2 cut(s)	638, 697
FaiI	YATR	6 cut(s)	297, 507, 583, 636, 695, 917
FalI	AAGNNNNNCTT	2 cut(s)	834, 866
FaqI	GGGAC	2 cut(s)	548, 884
FatI	CATG	2 cut(s)	634, 693
FauI	CCCGC	2 cut(s)	85, 471
Fnu4HI	GCNGC	5 cut(s)	31, 222, 483, 837, 867
FokI	GGATG	4 cut(s)	71, 335, 389, 875
Fsp4HI	GCNGC	5 cut(s)	31, 222, 483, 837, 867
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	5 cut(s)	31, 222, 483, 837, 867
GsuI	CTGGAG	2 cut(s)	543, 780
HaeIII	GGCC	2 cut(s)	207, 746
HapII	CCGG	1 cut(s)	675
Hin1II	CATG	2 cut(s)	638, 697
HinfI	GANTC	5 cut(s)	512, 527, 731, 753, 912
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	2 cut(s)	478, 940
Hpy166II	GTNNAC	3 cut(s)	98, 631, 664
Hpy188I	TCNGA	2 cut(s)	358, 952
Hpy188III	TCNNGA	4 cut(s)	155, 257, 694, 750
Hpy8I	GTNNAC	3 cut(s)	98, 631, 664
HpyAV	CCTTC	3 cut(s)	353, 463, 587
HpyCH4III	ACNGT	3 cut(s)	54, 577, 610
HpyCH4V	TGCA	4 cut(s)	165, 707, 866, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 491, 893
HpyF3I	CTNAG	8 cut(s)	279, 318, 548, 560, 651, 748, 807, 851
Hsp92II	CATG	2 cut(s)	638, 697
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	3 cut(s)	208, 469, 878
LweI	GCATC	3 cut(s)	367, 853, 883
MaeI	CTAG	1 cut(s)	450
MaeIII	GTNAC	2 cut(s)	388, 783
MboII	GAAGA	5 cut(s)	88, 241, 350, 734, 737
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	5 cut(s)	142, 252, 350, 713, 790
MlyI	GAGTC	2 cut(s)	521, 740
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	8 cut(s)	23, 262, 279, 337, 557, 757, 853, 916
MseI	TTAA	2 cut(s)	188, 991
MspI	CCGG	1 cut(s)	675
MspR9I	CCNGG	2 cut(s)	373, 798
Mva1269I	GAATGC	1 cut(s)	681
MvaI	CCWGG	2 cut(s)	373, 798
MwoI	GCNNNNNNNGC	3 cut(s)	30, 491, 893
NlaIII	CATG	2 cut(s)	638, 697
NlaIV	GGNNCC	3 cut(s)	276, 303, 673
PagI	TCATGA	1 cut(s)	693
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	1 cut(s)	681
PfeI	GAWTC	3 cut(s)	527, 753, 912
PkrI	GCNGC	5 cut(s)	32, 223, 484, 838, 868
PleI	GAGTC	2 cut(s)	520, 739
PpsI	GAGTC	2 cut(s)	520, 739
PpuMI	RGGWCCY	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	371, 796
PspGI	CCWGG	2 cut(s)	371, 796
PspN4I	GGNNCC	3 cut(s)	276, 303, 673
PspPI	GGNCC	1 cut(s)	275
PspPPI	RGGWCCY	1 cut(s)	275
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	188, 991
SatI	GCNGC	5 cut(s)	31, 222, 483, 837, 867
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	2 cut(s)	521, 740
ScrFI	CCNGG	2 cut(s)	373, 798
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	3 cut(s)	367, 853, 883
SinI	GGWCC	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	5 cut(s)	142, 252, 350, 713, 790
SsiI	CCGC	4 cut(s)	30, 92, 478, 837
SspI	AATATT	1 cut(s)	426
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	371, 796
StyI	CCWWGG	1 cut(s)	903
TaaI	ACNGT	3 cut(s)	54, 577, 610
TasI	AATT	5 cut(s)	142, 252, 350, 713, 790
TatI	WGTACW	1 cut(s)	97
TauI	GCSGC	2 cut(s)	33, 839
TfiI	GAWTC	3 cut(s)	527, 753, 912
Tru1I	TTAA	2 cut(s)	188, 991
Tru9I	TTAA	2 cut(s)	188, 991
TseI	GCWGC	3 cut(s)	221, 482, 866
TspDTI	ATGAA	5 cut(s)	99, 381, 606, 710, 904
TspGWI	ACGGA	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	2 cut(s)	252, 790
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.