Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017273.1

Orthogroup ID

OG0005411

Physical Location & Seq

Genomic Coordinates Forward (+)

40033 .. 40753

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017273.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgtcgtttatcctcccttgtagcattagcggcaacttgaaaagtagaaaacggttggatgtgagagacaatgggaagaaaaaaccaatggcgggtgtacttccttgttcatcatcaactctctctctactaactccactcaatttccattctcaagagcaatgcagagctttgtattctcaatctttaagcacccaaaggtgtggcctttttgtttgtgctgccaagaagaaagttagtttcacagaccaaattcttgattacattgaggggggtcctaagttgaggaaatggtatggggcacctgaacttttacctaaggatgggtctgttgctgaagatgaggacgaattatcagaaggagatgaaaccagggatgctgttttggtaactgacggagatagcgagatggggcaggtgcgttttctggcattgttaatttttctgatgtacatcgatcagaatctacatagatactacatggggatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

163

Amino Acids

18.23

Weight (kDa)

6.12

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72640 AT1G72640 AT1G72640 AT1G72640
fragaria_vesca	FvH4_6g34590
malus_domestica	MD09G1184500.v1.1
prunus_persica	Prupe.3G042700_v2.0.a1 Prupe.3G042700_v2.0.a1 Prupe.3G042700_v2.0.a1
pyrus_communis	pycom09g10220
rosa_chinensis	RchiOBHm_Chr2g0145111 RchiOBHm_Chr3g0497381 RchiOBHm_Chr6g0307231
rosa_laevigata	RLG00000020125 RLG00000022006 RLG00000026561
rosa_multiflora	Rmu_co8227637.1_g000001 Rmu_sc0002506.1_g000025 Rmu_sc0017273.1_g000010
rosa_roxburghii	Rroxscaffold_2G00100870
rosa_rugosa	Rorug02G0390300 Rorug02G0390400
rosa_samantha	Rh2AG443100 Rh2BG454100 Rh2CG430200 Rh2DG464000 Rh4DG089500
rosa_wichuraiana	Rw1G036560 Rw2G036220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	406
Acc36I	ACCTGC	1 cut(s)	406
AccB1I	GGYRCC	1 cut(s)	301
AciI	CCGC	2 cut(s)	30, 92
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	2 cut(s)	99, 452
AfiI	CCNNNNNNNGG	2 cut(s)	92, 323
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw26I	GTCTC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	275
AxyI	CCTNAGG	1 cut(s)	318
BaeGI	GKGCMC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	2 cut(s)	317, 403
BciT130I	CCWGG	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	406
BisI	GCNGC	2 cut(s)	31, 222
BlsI	GCNGC	2 cut(s)	32, 223
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	2 cut(s)	276, 303
BmrFI	CCNGG	1 cut(s)	373
BmsI	GCATC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	456
BsaBI	GATNNNNATC	2 cut(s)	452, 462
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 323
Bse21I	CCTNAGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	167
Bse8I	GATNNNNATC	2 cut(s)	452, 462
BseBI	CCWGG	1 cut(s)	373
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	3 cut(s)	64, 328, 382
BseJI	GATNNNNATC	2 cut(s)	452, 462
BseLI	CCNNNNNNNGG	2 cut(s)	92, 323
BseMI	GCAATG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	301
BshVI	ATCGAT	1 cut(s)	456
BslI	CCNNNNNNNGG	2 cut(s)	92, 323
BsmAI	GTCTC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	2 cut(s)	30, 92
BspANI	GGCC	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	456
BspLI	GGNNCC	2 cut(s)	276, 303
BspMI	ACCTGC	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	167
BsrGI	TGTACA	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	54
BstAUI	TGTACA	1 cut(s)	450
BstDEI	CTNAG	2 cut(s)	279, 318
BstF5I	GGATG	3 cut(s)	64, 328, 382
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	203
Bsu15I	ATCGAT	1 cut(s)	456
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	207
BsuTUI	ATCGAT	1 cut(s)	456
BtsCI	GGATG	3 cut(s)	64, 328, 382
BveI	ACCTGC	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	275
ClaI	ATCGAT	1 cut(s)	456
Csp6I	GTAC	2 cut(s)	98, 451
CviAII	CATG	1 cut(s)	481
CviJI	RGCY	2 cut(s)	170, 207
CviKI_1	RGCY	2 cut(s)	170, 207
CviQI	GTAC	2 cut(s)	98, 451
DdeI	CTNAG	2 cut(s)	279, 318
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	357
Eco81I	CCTNAGG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	371
FaeI	CATG	1 cut(s)	484
FaiI	YATR	4 cut(s)	297, 471, 482, 490
FatI	CATG	1 cut(s)	480
FauI	CCCGC	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	31, 222
FokI	GGATG	3 cut(s)	71, 335, 389
Fsp4HI	GCNGC	2 cut(s)	31, 222
GluI	GCNGC	2 cut(s)	31, 222
HaeIII	GGCC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	484
HinfI	GANTC	1 cut(s)	463
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	3 cut(s)	358, 447, 462
Hpy188III	TCNNGA	2 cut(s)	155, 257
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	2 cut(s)	279, 318
Hsp92II	CATG	1 cut(s)	484
Kzo9I	GATC	1 cut(s)	457
LpnPI	CCDG	5 cut(s)	318, 358, 385, 401, 413
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	3 cut(s)	88, 241, 350
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	4 cut(s)	142, 252, 350, 438
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	4 cut(s)	23, 262, 279, 337
MseI	TTAA	2 cut(s)	188, 437
MspR9I	CCNGG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	1 cut(s)	484
NlaIV	GGNNCC	2 cut(s)	276, 303
PaqCI	CACCTGC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	2 cut(s)	32, 223
PpuMI	RGGWCCY	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	276, 303
PspPI	GGNCC	1 cut(s)	275
PspPPI	RGGWCCY	1 cut(s)	275
RsaI	GTAC	2 cut(s)	99, 452
RsaNI	GTAC	2 cut(s)	98, 451
SaqAI	TTAA	2 cut(s)	188, 437
SatI	GCNGC	2 cut(s)	31, 222
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	373
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	5 cut(s)	172, 203, 307, 319, 420
SfaNI	GCATC	1 cut(s)	367
SinI	GGWCC	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	4 cut(s)	142, 252, 350, 438
SsiI	CCGC	2 cut(s)	30, 92
StyD4I	CCNGG	1 cut(s)	371
TaaI	ACNGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	456
TasI	AATT	4 cut(s)	142, 252, 350, 438
TatI	WGTACW	2 cut(s)	97, 450
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	2 cut(s)	188, 437
Tru9I	TTAA	2 cut(s)	188, 437
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	99, 381
TspGWI	ACGGA	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.