Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005411

Physical Location & Seq

Genomic Coordinates Reverse (-)

8365650 .. 8368339

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g10220.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCGGATGCACTTCCTTCTTCGTCAACTCTCTCTTTACTGACTCTACCCAGCTTGCCTTCTCAAAACCCAACTAGACCACTGCAGCATTCTTGTTTCATCTCTACCGCCCGAAAGCGTGATCTTCTTCGATGCAAGGCCAAGAAGAAAATAAGCTTGGCAGACCAAATTCTTGATTACATCGAGGGGGGTCCCAAGTTAAGGAAATGGTATGGGGCACCTGAGCTTCTACCAAAAGATGGATCCGCAGATGAAGAAGATGAGGATGAATTCACAGAAGGAGAAGAACTCAGAGATGCTGTATTGGTAACTGATGGAGATAGTGAGATGGGACAGATGGTAATATTGTCATTGATCGTCAAAAGAGCTAGAATAAAAGCGCTGGTGAAGGATAAGCGGGCAGCACTTGAAGCTTTTGGGACTTATGTTGAGTCAATGGCCGGAGATTCAAGGGACAAGCCGTTCCTAAAGAGAGTTCTACGAGGAGTTTCCACAGTAATATGCCCAATTGAAGGTTTCTTATCTACCGTTGGGAGCTTGAAAGGGGTAAAACATATAATCCTCTTATCTCAGTTGTCTGTTTACAAAGGTGCCAATGGCATTCAAGCTCTCATGAAAAGCAATGCAAGAAAATTGGCTGAGCAAGATGAATCAATAATGGTGGCCTCTGGAATCCCTTACACCGTAATCAGAGCTGGCTCGTTACAAAATTCTCCCGGTGGAACTCAAGGTTTTAGCTTTGAACAGGGAAGTGCAGCAAAAGGAACTCTTAGCAAAGAGGATGCTGCCTTTATTTGTGCAGAAGCAGTTGGTGTAGTCCCTCAGAGAGGATTCATATTTGAGGTGGTGAATGGAGACGAAAAGGTTTCAGATTGGAAAGAGTTTTTGAACGCAATGCTGAAGAAGTCAGAAGAGCAACCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

309

Amino Acids

33.45

Weight (kDa)

6.25

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72640 AT1G72640 AT1G72640 AT1G72640
fragaria_vesca	FvH4_6g34590
malus_domestica	MD09G1184500.v1.1
prunus_persica	Prupe.3G042700_v2.0.a1 Prupe.3G042700_v2.0.a1 Prupe.3G042700_v2.0.a1
pyrus_communis	pycom09g10220
rosa_chinensis	RchiOBHm_Chr2g0145111 RchiOBHm_Chr3g0497381 RchiOBHm_Chr6g0307231
rosa_laevigata	RLG00000020125 RLG00000022006 RLG00000026561
rosa_multiflora	Rmu_co8227637.1_g000001 Rmu_sc0002506.1_g000025 Rmu_sc0017273.1_g000010
rosa_roxburghii	Rroxscaffold_2G00100870
rosa_rugosa	Rorug02G0390300 Rorug02G0390400
rosa_samantha	Rh2AG443100 Rh2BG454100 Rh2CG430200 Rh2DG464000 Rh4DG089500
rosa_wichuraiana	Rw1G036560 Rw2G036220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	217, 590
AccB7I	CCANNNNNTGG	1 cut(s)	239
AciI	CCGC	4 cut(s)	5, 108, 246, 397
AclWI	GGATC	2 cut(s)	237, 250
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	3 cut(s)	168, 269, 709
AcuI	CTGAAG	1 cut(s)	920
AfeI	AGCGCT	1 cut(s)	381
AfiI	CCNNNNNNNGG	4 cut(s)	201, 239, 512, 827
AgsI	TTSAA	7 cut(s)	410, 450, 512, 541, 605, 743, 889
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AloI	GAACNNNNNNTCC	2 cut(s)	446, 478
AluBI	AGCT	9 cut(s)	54, 156, 226, 368, 413, 537, 608, 695, 738
AluI	AGCT	9 cut(s)	54, 156, 226, 368, 413, 537, 608, 695, 738
Alw26I	GTCTC	1 cut(s)	849
AlwI	GGATC	2 cut(s)	237, 250
Aor51HI	AGCGCT	1 cut(s)	381
AoxI	GGCC	3 cut(s)	138, 438, 663
ApeKI	GCWGC	4 cut(s)	85, 401, 755, 785
ApoI	RAATTY	3 cut(s)	168, 269, 709
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	717
AsuHPI	GGTGA	2 cut(s)	397, 859
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	242
BanI	GGYRCC	2 cut(s)	217, 590
BbvI	GCAGC	4 cut(s)	97, 413, 767, 772
BccI	CCATC	4 cut(s)	233, 308, 322, 331
BceAI	ACGGC	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	717
BcoDI	GTCTC	1 cut(s)	849
BfaI	CTAG	2 cut(s)	75, 369
BfmI	CTRYAG	1 cut(s)	83
BfoI	RGCGCY	1 cut(s)	383
BisI	GCNGC	4 cut(s)	86, 402, 756, 786
BlpI	GCTNAGC	1 cut(s)	639
BlsI	GCNGC	4 cut(s)	87, 403, 757, 787
Bme1390I	CCNGG	1 cut(s)	717
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	5 cut(s)	192, 193, 219, 244, 592
BmrFI	CCNGG	1 cut(s)	717
BmsI	GCATC	3 cut(s)	122, 286, 772
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	711
BpuMI	CCSGG	1 cut(s)	717
Bsc4I	CCNNNNNNNGG	4 cut(s)	201, 239, 512, 827
Bse3DI	GCAATG	2 cut(s)	628, 900
BseGI	GGATG	3 cut(s)	13, 271, 787
BseLI	CCNNNNNNNGG	4 cut(s)	201, 239, 512, 827
BseMI	GCAATG	2 cut(s)	628, 900
BseMII	CTCAG	5 cut(s)	213, 304, 584, 630, 836
BseRI	GAGGAG	1 cut(s)	498
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	4 cut(s)	97, 413, 767, 772
BseYI	CCCAGC	1 cut(s)	50
BsgI	GTGCAG	2 cut(s)	774, 819
BshFI	GGCC	3 cut(s)	140, 440, 665
BshNI	GGYRCC	2 cut(s)	217, 590
BsiSI	CCGG	2 cut(s)	441, 717
BslFI	GGGAC	5 cut(s)	177, 345, 433, 467, 803
BslI	CCNNNNNNNGG	4 cut(s)	201, 239, 512, 827
BsmAI	GTCTC	1 cut(s)	849
BsmBI	CGTCTC	1 cut(s)	849
BsmFI	GGGAC	5 cut(s)	177, 345, 433, 467, 803
BsmI	GAATGC	2 cut(s)	88, 600
BsnI	GGCC	3 cut(s)	140, 440, 665
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	121, 242, 354
Bsp1720I	GCTNAGC	1 cut(s)	639
BspACI	CCGC	4 cut(s)	5, 108, 246, 397
BspANI	GGCC	3 cut(s)	140, 440, 665
BspCNI	CTCAG	5 cut(s)	214, 303, 583, 631, 835
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	5 cut(s)	192, 193, 219, 244, 592
BspMAI	CTGCAG	1 cut(s)	87
BspPI	GGATC	2 cut(s)	237, 250
BspQI	GCTCTTC	1 cut(s)	906
BspT107I	GGYRCC	2 cut(s)	217, 590
BsrDI	GCAATG	2 cut(s)	628, 900
BssMI	GATC	3 cut(s)	121, 242, 354
Bst4CI	ACNGT	3 cut(s)	496, 529, 685
Bst6I	CTCTTC	1 cut(s)	906
BstC8I	GCNNGC	3 cut(s)	56, 399, 697
BstDEI	CTNAG	7 cut(s)	222, 290, 570, 639, 770, 822, 921
BstENI	CCTNNNNNAGG	1 cut(s)	825
BstF5I	GGATG	3 cut(s)	13, 271, 787
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	3 cut(s)	124, 245, 357
BstMAI	GTCTC	1 cut(s)	849
BstMBI	GATC	3 cut(s)	121, 242, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	715
BstSFI	CTRYAG	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	220
BstV1I	GCAGC	4 cut(s)	97, 413, 767, 772
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	3 cut(s)	140, 440, 665
BtsCI	GGATG	3 cut(s)	13, 271, 787
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	3 cut(s)	56, 399, 697
CciI	TCATGA	1 cut(s)	612
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	191
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	1 cut(s)	613
DdeI	CTNAG	7 cut(s)	222, 290, 570, 639, 770, 822, 921
DpnI	GATC	3 cut(s)	123, 244, 356
DpnII	GATC	3 cut(s)	121, 242, 354
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	906
EarI	CTCTTC	1 cut(s)	906
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	191
Eco47III	AGCGCT	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	920
EcoNI	CCTNNNNNAGG	1 cut(s)	825
EcoO109I	RGGNCCY	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	269
Esp3I	CGTCTC	1 cut(s)	849
FaeI	CATG	1 cut(s)	616
FaiI	YATR	7 cut(s)	213, 426, 502, 555, 557, 614, 836
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FaqI	GGGAC	5 cut(s)	177, 345, 433, 467, 803
FatI	CATG	1 cut(s)	612
FauI	CCCGC	1 cut(s)	390
Fnu4HI	GCNGC	4 cut(s)	86, 402, 756, 786
FokI	GGATG	3 cut(s)	20, 278, 794
Fsp4HI	GCNGC	4 cut(s)	86, 402, 756, 786
FspBI	CTAG	2 cut(s)	75, 369
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	4 cut(s)	86, 402, 756, 786
GsaI	CCCAGC	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	3 cut(s)	140, 440, 665
HapII	CCGG	2 cut(s)	441, 717
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	1 cut(s)	616
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HindIII	AAGCTT	2 cut(s)	154, 411
HinfI	GANTC	6 cut(s)	43, 431, 446, 650, 672, 831
HpaII	CCGG	2 cut(s)	441, 717
HphI	GGTGA	2 cut(s)	397, 859
Hpy166II	GTNNAC	2 cut(s)	27, 583
Hpy188I	TCNGA	5 cut(s)	293, 692, 825, 871, 910
Hpy188III	TCNNGA	3 cut(s)	173, 613, 669
Hpy8I	GTNNAC	2 cut(s)	27, 583
HpyAV	CCTTC	5 cut(s)	27, 69, 272, 382, 506
HpyCH4III	ACNGT	3 cut(s)	496, 529, 685
HpyCH4V	TGCA	6 cut(s)	11, 85, 135, 626, 755, 800
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	7 cut(s)	222, 290, 570, 639, 770, 822, 921
Hsp92II	CATG	1 cut(s)	616
HspAI	GCGC	1 cut(s)	380
KflI	GGGWCCC	1 cut(s)	191
Kzo9I	GATC	3 cut(s)	121, 242, 354
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	1 cut(s)	534
LpnPI	CCDG	8 cut(s)	64, 234, 368, 454, 654, 681, 730, 731
Lsp1109I	GCAGC	4 cut(s)	97, 413, 767, 772
LweI	GCATC	3 cut(s)	122, 286, 772
MaeI	CTAG	2 cut(s)	75, 369
MaeIII	GTNAC	2 cut(s)	307, 702
MalI	GATC	3 cut(s)	123, 244, 356
MboI	GATC	3 cut(s)	121, 242, 354
MboII	GAAGA	9 cut(s)	12, 116, 119, 157, 266, 269, 296, 913, 923
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	5 cut(s)	168, 269, 507, 632, 709
MlyI	GAGTC	2 cut(s)	37, 440
MnlI	CCTC	9 cut(s)	178, 256, 476, 572, 676, 772, 821, 831, 835
MseI	TTAA	1 cut(s)	200
MspI	CCGG	2 cut(s)	441, 717
MspR9I	CCNGG	1 cut(s)	717
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	2 cut(s)	88, 600
MwoI	GCNNNNNNNGC	1 cut(s)	410
NciI	CCSGG	1 cut(s)	717
NdeII	GATC	3 cut(s)	121, 242, 354
NlaIII	CATG	1 cut(s)	616
NlaIV	GGNNCC	5 cut(s)	192, 193, 219, 244, 592
PagI	TCATGA	1 cut(s)	612
PciSI	GCTCTTC	1 cut(s)	906
PctI	GAATGC	2 cut(s)	88, 600
PfeI	GAWTC	4 cut(s)	446, 650, 672, 831
PflMI	CCANNNNNTGG	1 cut(s)	239
PkrI	GCNGC	4 cut(s)	87, 403, 757, 787
PleI	GAGTC	2 cut(s)	37, 439
PpsI	GAGTC	2 cut(s)	37, 439
PpuMI	RGGWCCY	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	50
PspN4I	GGNNCC	5 cut(s)	192, 193, 219, 244, 592
PspPI	GGNCC	1 cut(s)	191
PspPPI	RGGWCCY	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	242
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	4 cut(s)	86, 402, 756, 786
Sau3AI	GATC	3 cut(s)	121, 242, 354
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	2 cut(s)	37, 440
ScrFI	CCNGG	1 cut(s)	717
SduI	GDGCHC	1 cut(s)	220
SfaNI	GCATC	3 cut(s)	122, 286, 772
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	726
SmoI	CTYRAG	1 cut(s)	726
Sse9I	AATT	5 cut(s)	168, 269, 507, 632, 709
SsiI	CCGC	4 cut(s)	5, 108, 246, 397
SspI	AATATT	1 cut(s)	345
SspMI	CTAG	2 cut(s)	75, 369
StyD4I	CCNGG	1 cut(s)	715
TaaI	ACNGT	3 cut(s)	496, 529, 685
TaqI	TCGA	2 cut(s)	130, 183
TasI	AATT	5 cut(s)	168, 269, 507, 632, 709
TfiI	GAWTC	4 cut(s)	446, 650, 672, 831
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	4 cut(s)	85, 401, 755, 785
TspDTI	ATGAA	6 cut(s)	88, 267, 282, 629, 663, 823
TspRI	CASTG	1 cut(s)	87
Van91I	CCANNNNNTGG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	825
XapI	RAATTY	3 cut(s)	168, 269, 709
XspI	CTAG	2 cut(s)	75, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.