Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005411

Physical Location & Seq

Genomic Coordinates Reverse (-)

3839305 .. 3846515

Gene Structure 7211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026561

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGTGGTAAGAGTATGGAATACGGAAAAGCAGTTCAAGAGAGTGAATACGAGCAACTTCGTGTTGTTCGCGAGGGTCAGCTTCGTATCGTGTTTACACAAAGATTTAAAGGTCTATCAGTTGGTTCAGGTTGCACAAGTGCCAGACTACGATTGCTGAAAGTGGATCTGAAAGTTAATGAGGCTTTGGACGTGGTGGATCTGGATGAAGTTGAGGGCTTGAAGGTTTATCCTCGACATGCAAATGCAACCAGGCTCCAGATGCAAAAGATCCAGGAAATGGAGCAGTTAACAAGTATTCAGGGCATGCCAACTGACAGGAACACTCTTAGTTTTGCTTATTACTGGTGGAGGTCAATGTCTGTGTTGACAGTCTGTGGTTTTTTTGCAGTCAGATGGCAAAGAAATAAATCTCGAGAAATGCTCGAGGACGGTTCTATAGAGCCAGTGCATCGAGGACCTTGGACCGGAAGGTTTCTTATCTACTGTTGGGACCTTGAAATGGGTAAACCATGTCATTCTCTTATCACATGTGCTGGTGGCATTCAAGCTCTCATGAAAAGCAATGAAAGAAAATTAGCCGAAGAAGATCAGTCAATACTGATGGCCTTGGAAATCCCTTACACCATCATCAGGACTGGTTTGTTACAAAACTCTCGACGTGAAATTCAAGGCTTTAACTTTGAAAAGGTTGAAACTGAATTTGAACAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

239

Amino Acids

27.5

Weight (kDa)

6.85

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72640 AT1G72640 AT1G72640 AT1G72640
fragaria_vesca	FvH4_6g34590
malus_domestica	MD09G1184500.v1.1
prunus_persica	Prupe.3G042700_v2.0.a1 Prupe.3G042700_v2.0.a1 Prupe.3G042700_v2.0.a1
pyrus_communis	pycom09g10220
rosa_chinensis	RchiOBHm_Chr2g0145111 RchiOBHm_Chr3g0497381 RchiOBHm_Chr6g0307231
rosa_laevigata	RLG00000020125 RLG00000022006 RLG00000026561
rosa_multiflora	Rmu_co8227637.1_g000001 Rmu_sc0002506.1_g000025 Rmu_sc0017273.1_g000010
rosa_roxburghii	Rroxscaffold_2G00100870
rosa_rugosa	Rorug02G0390300 Rorug02G0390400
rosa_samantha	Rh2AG443100 Rh2BG454100 Rh2CG430200 Rh2DG464000 Rh4DG089500
rosa_wichuraiana	Rw1G036560 Rw2G036220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccII	CGCG	1 cut(s)	72
AclWI	GGATC	3 cut(s)	174, 207, 265
AcsI	RAATTY	2 cut(s)	666, 701
AfiI	CCNNNNNNNGG	4 cut(s)	280, 467, 502, 633
AflIII	ACRYGT	1 cut(s)	530
AgsI	TTSAA	8 cut(s)	38, 223, 500, 548, 671, 686, 695, 707
AjiI	CACGTC	2 cut(s)	193, 662
AjnI	CCWGG	2 cut(s)	251, 273
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	2 cut(s)	82, 551
AluI	AGCT	2 cut(s)	82, 551
AlwI	GGATC	3 cut(s)	174, 207, 265
Ama87I	CYCGRG	2 cut(s)	414, 425
AoxI	GGCC	1 cut(s)	606
ApoI	RAATTY	2 cut(s)	666, 701
AspS9I	GGNCC	3 cut(s)	458, 465, 493
AvaI	CYCGRG	2 cut(s)	414, 425
AvaII	GGWCC	3 cut(s)	458, 465, 493
BccI	CCATC	3 cut(s)	390, 598, 635
BciT130I	CCWGG	2 cut(s)	253, 275
BfmI	CTRYAG	1 cut(s)	438
Bme1390I	CCNGG	2 cut(s)	253, 275
Bme18I	GGWCC	3 cut(s)	458, 465, 493
BmeT110I	CYCGRG	2 cut(s)	414, 425
BmgBI	CACGTC	2 cut(s)	193, 662
BmgT120I	GGNCC	3 cut(s)	458, 465, 493
BmiI	GGNNCC	2 cut(s)	257, 494
BmrFI	CCNGG	2 cut(s)	253, 275
BmsI	GCATC	2 cut(s)	252, 460
BplI	GAGNNNNNCTC	2 cut(s)	408, 440
BpmI	CTGGAG	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	461, 609
BsaWI	WCCGGW	1 cut(s)	467
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 467, 502, 633
Bse1I	ACTGG	3 cut(s)	350, 446, 643
Bse3DI	GCAATG	1 cut(s)	571
BseBI	CCWGG	2 cut(s)	253, 275
BseDI	CCNNGG	2 cut(s)	461, 609
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	4 cut(s)	280, 467, 502, 633
BseMI	GCAATG	1 cut(s)	571
BseNI	ACTGG	3 cut(s)	350, 446, 643
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	608
BsiHKCI	CYCGRG	2 cut(s)	414, 425
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	4 cut(s)	280, 467, 502, 633
BsmFI	GGGAC	1 cut(s)	506
BsmI	GAATGC	1 cut(s)	543
BsnI	GGCC	1 cut(s)	608
BsoBI	CYCGRG	2 cut(s)	414, 425
Bsp143I	GATC	4 cut(s)	166, 199, 270, 589
Bsp68I	TCGCGA	1 cut(s)	72
BspANI	GGCC	1 cut(s)	608
BspFNI	CGCG	1 cut(s)	72
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	2 cut(s)	257, 494
BspPI	GGATC	3 cut(s)	174, 207, 265
BsrDI	GCAATG	1 cut(s)	571
BsrI	ACTGG	3 cut(s)	350, 446, 643
BssECI	CCNNGG	2 cut(s)	461, 609
BssMI	GATC	4 cut(s)	166, 199, 270, 589
BssT1I	CCWWGG	2 cut(s)	461, 609
Bst2UI	CCWGG	2 cut(s)	253, 275
Bst4CI	ACNGT	3 cut(s)	373, 434, 488
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	4 cut(s)	169, 202, 273, 592
BstMBI	GATC	4 cut(s)	166, 199, 270, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	2 cut(s)	253, 275
BstNSI	RCATGY	3 cut(s)	242, 310, 534
BstSCI	CCNGG	2 cut(s)	251, 273
BstSFI	CTRYAG	1 cut(s)	438
BstUI	CGCG	1 cut(s)	72
BstX2I	RGATCY	3 cut(s)	166, 199, 270
BstYI	RGATCY	3 cut(s)	166, 199, 270
BsuRI	GGCC	1 cut(s)	608
BtrI	CACGTC	2 cut(s)	193, 662
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	453
BtuMI	TCGCGA	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	308
CciI	TCATGA	1 cut(s)	555
Cfr13I	GGNCC	3 cut(s)	458, 465, 493
CviAII	CATG	5 cut(s)	239, 307, 513, 531, 556
CviJI	RGCY	9 cut(s)	82, 185, 219, 256, 445, 551, 581, 608, 675
CviKI_1	RGCY	9 cut(s)	82, 185, 219, 256, 445, 551, 581, 608, 675
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	4 cut(s)	168, 201, 272, 591
DpnII	GATC	4 cut(s)	166, 199, 270, 589
DraI	TTTAAA	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	461, 609
Eco47I	GGWCC	3 cut(s)	458, 465, 493
Eco88I	CYCGRG	2 cut(s)	414, 425
EcoO109I	RGGNCCY	2 cut(s)	458, 493
EcoRII	CCWGG	2 cut(s)	251, 273
EcoT14I	CCWWGG	2 cut(s)	461, 609
ErhI	CCWWGG	2 cut(s)	461, 609
FaeI	CATG	5 cut(s)	242, 310, 516, 534, 559
FaiI	YATR	7 cut(s)	17, 240, 308, 440, 514, 532, 557
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	5 cut(s)	238, 306, 512, 530, 555
FokI	GGATG	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	608
HapII	CCGG	1 cut(s)	468
Hin1II	CATG	5 cut(s)	242, 310, 516, 534, 559
HincII	GTYRAC	2 cut(s)	291, 369
HindII	GTYRAC	2 cut(s)	291, 369
HpaI	GTTAAC	1 cut(s)	291
HpaII	CCGG	1 cut(s)	468
Hpy166II	GTNNAC	4 cut(s)	96, 291, 369, 509
Hpy188I	TCNGA	2 cut(s)	171, 395
Hpy188III	TCNNGA	9 cut(s)	38, 71, 203, 259, 414, 416, 556, 634, 657
Hpy8I	GTNNAC	4 cut(s)	96, 291, 369, 509
Hpy99I	CGWCG	1 cut(s)	663
HpyAV	CCTTC	2 cut(s)	217, 465
HpyCH4III	ACNGT	3 cut(s)	373, 434, 488
HpyCH4IV	ACGT	2 cut(s)	192, 661
HpyCH4V	TGCA	6 cut(s)	135, 242, 248, 265, 389, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	2 cut(s)	192, 661
Hsp92II	CATG	5 cut(s)	242, 310, 516, 534, 559
KspAI	GTTAAC	1 cut(s)	291
Kzo9I	GATC	4 cut(s)	166, 199, 270, 589
LmnI	GCTCC	2 cut(s)	261, 283
LweI	GCATC	2 cut(s)	252, 460
MaeII	ACGT	2 cut(s)	192, 661
MaeIII	GTNAC	1 cut(s)	645
MalI	GATC	4 cut(s)	168, 201, 272, 591
MboI	GATC	4 cut(s)	166, 199, 270, 589
MboII	GAAGA	2 cut(s)	596, 599
MflI	RGATCY	3 cut(s)	166, 199, 270
MluCI	AATT	3 cut(s)	575, 666, 701
MnlI	CCTC	7 cut(s)	67, 175, 208, 243, 345, 421, 449
MseI	TTAA	4 cut(s)	108, 177, 290, 678
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	2 cut(s)	253, 275
Mva1269I	GAATGC	1 cut(s)	543
MvaI	CCWGG	2 cut(s)	253, 275
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	4 cut(s)	166, 199, 270, 589
NlaIII	CATG	5 cut(s)	242, 310, 516, 534, 559
NlaIV	GGNNCC	2 cut(s)	257, 494
NruI	TCGCGA	1 cut(s)	72
NspI	RCATGY	3 cut(s)	242, 310, 534
PaeI	GCATGC	1 cut(s)	310
PaeR7I	CTCGAG	2 cut(s)	414, 425
PagI	TCATGA	1 cut(s)	555
PciI	ACATGT	1 cut(s)	530
PctI	GAATGC	1 cut(s)	543
PflMI	CCANNNNNTGG	1 cut(s)	280
PfoI	TCCNGGA	1 cut(s)	273
PpuMI	RGGWCCY	2 cut(s)	458, 493
PscI	ACATGT	1 cut(s)	530
Psp5II	RGGWCCY	2 cut(s)	458, 493
Psp6I	CCWGG	2 cut(s)	251, 273
PspGI	CCWGG	2 cut(s)	251, 273
PspN4I	GGNNCC	2 cut(s)	257, 494
PspPI	GGNCC	3 cut(s)	458, 465, 493
PspPPI	RGGWCCY	2 cut(s)	458, 493
PspXI	VCTCGAGB	1 cut(s)	425
PsuI	RGATCY	3 cut(s)	166, 199, 270
RruI	TCGCGA	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	4 cut(s)	108, 177, 290, 678
Sau3AI	GATC	4 cut(s)	166, 199, 270, 589
Sau96I	GGNCC	3 cut(s)	458, 465, 493
ScrFI	CCNGG	2 cut(s)	253, 275
SfaNI	GCATC	2 cut(s)	252, 460
SfcI	CTRYAG	1 cut(s)	438
Sfr274I	CTCGAG	2 cut(s)	414, 425
SinI	GGWCC	3 cut(s)	458, 465, 493
SlaI	CTCGAG	2 cut(s)	414, 425
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	414, 425
SmoI	CTYRAG	2 cut(s)	414, 425
SphI	GCATGC	1 cut(s)	310
Sse9I	AATT	3 cut(s)	575, 666, 701
StyD4I	CCNGG	2 cut(s)	251, 273
StyI	CCWWGG	2 cut(s)	461, 609
TaaI	ACNGT	3 cut(s)	373, 434, 488
TaiI	ACGT	2 cut(s)	195, 664
TaqI	TCGA	5 cut(s)	235, 415, 426, 454, 658
TasI	AATT	3 cut(s)	575, 666, 701
Tru1I	TTAA	4 cut(s)	108, 177, 290, 678
Tru9I	TTAA	4 cut(s)	108, 177, 290, 678
TscAI	CASTG	1 cut(s)	453
TspDTI	ATGAA	3 cut(s)	222, 572, 582
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	453
Van91I	CCANNNNNTGG	1 cut(s)	280
VpaK11BI	GGWCC	3 cut(s)	458, 465, 493
XapI	RAATTY	2 cut(s)	666, 701
XceI	RCATGY	3 cut(s)	242, 310, 534
XhoI	CTCGAG	2 cut(s)	414, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.