Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005411

Physical Location & Seq

Genomic Coordinates Reverse (-)

3043299 .. 3046207

Gene Structure 2909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G042700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCGGGTGTACTTCCTTCTTCATCAACTCTCTCTCTTCTGGCTTCACTCAATTTACCTTATCAGAAGCCATCGTATTCTAGCTGTTTCATCTTAAGAACCCGAAAGCGTCCTCTTGTTCAATGCAAGGCCAAGAAAAAAGTTAGCTTCACAGACCAAATTCTTGATTATATTGAAGGGGGTCCCAAGTTAAGGAAATGGTATGGGGCACCTGAGCTTCTGCCTAAAGATGGAACAAATGTTGAAGAAGATGATGAATTCCCAGAAGGAGAAGAAACTAGGGATGCTGTTTTGGTAACTGATGGAGATAGTGAGATGGGTCAGATGGTAATATTGTCATTGATTGTCAAAAGAGCTCGAATAAAAGCACTGGTGAAGGATAAGCGGGCTGCACTTGAAGCATTTGGGACTTATGTTGAGTCAATGGCTGGAGATTCAAGGGACAAGCCATTTCTAAGGAGAGCTCTAAGAGGAGTTTGCACAGTAATATGCCCAAATGAAGGCTTCTTATCTACCGTTGGGAGCTTGAAAGGGGTCAAACATGTAATTCTCTTATCTCAGTTGTCTGTTTACAAAGGTGCCAATGGCATTCAAGCTCTCCTGAAAAGCAATGCAAGAAAATTGGCTGAGCAAGATGAATCAATACTGGTGGCCTCAGGAATCCCTTACACCGTGATCCGGGCTGGCTTGTTGCAAAATTCTTCTGGTGGAACTCAAGGTTTTAGCTTTGAACAGGGTAGTTCAGCAAAAGGAACTCTTGGCAAGGAGGATGCTGCCTTTATTTGTGTGGAAGCAGTTGATGCAGTCCCCCAGAAAGGCTTCATATTTGAGGTGATCAATGGAGGTGAGAAGGTTTCAGATTGGAAAGAATGTTTGAACAGATTGATGGAGAAATCGGAACAGCAACTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

305

Amino Acids

33.11

Weight (kDa)

8.41

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72640 AT1G72640 AT1G72640 AT1G72640
fragaria_vesca	FvH4_6g34590
malus_domestica	MD09G1184500.v1.1
prunus_persica	Prupe.3G042700_v2.0.a1 Prupe.3G042700_v2.0.a1 Prupe.3G042700_v2.0.a1
pyrus_communis	pycom09g10220
rosa_chinensis	RchiOBHm_Chr2g0145111 RchiOBHm_Chr3g0497381 RchiOBHm_Chr6g0307231
rosa_laevigata	RLG00000020125 RLG00000022006 RLG00000026561
rosa_multiflora	Rmu_co8227637.1_g000001 Rmu_sc0002506.1_g000025 Rmu_sc0017273.1_g000010
rosa_roxburghii	Rroxscaffold_2G00100870
rosa_rugosa	Rorug02G0390300 Rorug02G0390400
rosa_samantha	Rh2AG443100 Rh2BG454100 Rh2CG430200 Rh2DG464000 Rh4DG089500
rosa_wichuraiana	Rw1G036560 Rw2G036220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	208, 578
AciI	CCGC	2 cut(s)	5, 385
AclWI	GGATC	1 cut(s)	670
AcsI	RAATTY	3 cut(s)	159, 257, 697
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	5 cut(s)	192, 230, 500, 678, 815
AflII	CTTAAG	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	541
AluBI	AGCT	8 cut(s)	84, 147, 217, 356, 464, 525, 596, 726
AluI	AGCT	8 cut(s)	84, 147, 217, 356, 464, 525, 596, 726
Alw21I	GWGCWC	2 cut(s)	358, 466
AlwI	GGATC	1 cut(s)	670
AoxI	GGCC	2 cut(s)	129, 651
ApeKI	GCWGC	2 cut(s)	389, 773
ApoI	RAATTY	3 cut(s)	159, 257, 697
Asp700I	GAANNNNTTC	1 cut(s)	818
AspS9I	GGNCC	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	680
AsuHPI	GGTGA	3 cut(s)	385, 844, 857
AvaII	GGWCC	1 cut(s)	182
AxyI	CCTNAGG	1 cut(s)	655
BaeGI	GKGCMC	1 cut(s)	211
BanI	GGYRCC	2 cut(s)	208, 578
BanII	GRGCYC	2 cut(s)	358, 466
Bbv12I	GWGCWC	2 cut(s)	358, 466
BbvI	GCAGC	2 cut(s)	376, 760
BccI	CCATC	6 cut(s)	79, 224, 296, 310, 319, 880
BclI	TGATCA	1 cut(s)	834
BcnI	CCSGG	1 cut(s)	680
BfaI	CTAG	2 cut(s)	81, 279
BfrI	CTTAAG	1 cut(s)	94
BisI	GCNGC	2 cut(s)	390, 774
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	2 cut(s)	391, 775
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	4 cut(s)	183, 184, 210, 580
BmrFI	CCNGG	1 cut(s)	680
BmsI	GCATC	3 cut(s)	274, 760, 790
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	1 cut(s)	699
BpuMI	CCSGG	1 cut(s)	680
Bsc4I	CCNNNNNNNGG	5 cut(s)	192, 230, 500, 678, 815
Bse1I	ACTGG	2 cut(s)	375, 651
Bse21I	CCTNAGG	1 cut(s)	655
Bse3DI	GCAATG	1 cut(s)	616
BseGI	GGATG	2 cut(s)	289, 775
BseLI	CCNNNNNNNGG	5 cut(s)	192, 230, 500, 678, 815
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	4 cut(s)	204, 572, 618, 669
BseNI	ACTGG	2 cut(s)	375, 651
BseRI	GAGGAG	1 cut(s)	486
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	376, 760
BsgI	GTGCAG	1 cut(s)	375
BshFI	GGCC	2 cut(s)	131, 653
BshNI	GGYRCC	2 cut(s)	208, 578
BsiHKAI	GWGCWC	2 cut(s)	358, 466
BsiSI	CCGG	1 cut(s)	679
BslFI	GGGAC	4 cut(s)	168, 421, 455, 791
BslI	CCNNNNNNNGG	5 cut(s)	192, 230, 500, 678, 815
BsmFI	GGGAC	4 cut(s)	168, 421, 455, 791
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	2 cut(s)	131, 653
Bsp1286I	GDGCHC	3 cut(s)	211, 358, 466
Bsp143I	GATC	2 cut(s)	675, 834
Bsp1720I	GCTNAGC	1 cut(s)	627
BspACI	CCGC	2 cut(s)	5, 385
BspANI	GGCC	2 cut(s)	131, 653
BspCNI	CTCAG	4 cut(s)	205, 571, 619, 668
BspLI	GGNNCC	4 cut(s)	183, 184, 210, 580
BspPI	GGATC	1 cut(s)	670
BspT107I	GGYRCC	2 cut(s)	208, 578
BspTI	CTTAAG	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	616
BsrI	ACTGG	2 cut(s)	375, 651
BssMI	GATC	2 cut(s)	675, 834
Bst4CI	ACNGT	3 cut(s)	484, 517, 673
Bst6I	CTCTTC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	800
BstC8I	GCNNGC	2 cut(s)	387, 685
BstDEI	CTNAG	6 cut(s)	213, 455, 467, 558, 627, 655
BstF5I	GGATG	2 cut(s)	289, 775
BstKTI	GATC	2 cut(s)	678, 837
BstMBI	GATC	2 cut(s)	675, 834
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 800
BstNSI	RCATGY	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	678
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	2 cut(s)	376, 760
Bsu36I	CCTNAGG	1 cut(s)	655
BsuRI	GGCC	2 cut(s)	131, 653
BtsCI	GGATG	2 cut(s)	289, 775
BtsIMutI	CAGTG	1 cut(s)	368
Cac8I	GCNNGC	2 cut(s)	387, 685
Cfr13I	GGNCC	1 cut(s)	182
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	11
CspCI	CAANNNNNGTGG	2 cut(s)	630, 665
CviAII	CATG	1 cut(s)	542
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	6 cut(s)	213, 455, 467, 558, 627, 655
DpnI	GATC	2 cut(s)	677, 836
DpnII	GATC	2 cut(s)	675, 834
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Ecl136II	GAGCTC	2 cut(s)	356, 464
Eco24I	GRGCYC	2 cut(s)	358, 466
Eco47I	GGWCC	1 cut(s)	182
Eco53kI	GAGCTC	2 cut(s)	356, 464
Eco81I	CCTNAGG	1 cut(s)	655
EcoICRI	GAGCTC	2 cut(s)	356, 464
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	257
EcoT38I	GRGCYC	2 cut(s)	358, 466
FaeI	CATG	1 cut(s)	545
FaiI	YATR	6 cut(s)	171, 204, 414, 490, 543, 824
FalI	AAGNNNNNCTT	2 cut(s)	741, 773
FaqI	GGGAC	4 cut(s)	168, 421, 455, 791
FatI	CATG	1 cut(s)	541
FauI	CCCGC	1 cut(s)	378
FbaI	TGATCA	1 cut(s)	834
Fnu4HI	GCNGC	2 cut(s)	390, 774
FokI	GGATG	2 cut(s)	296, 782
FriOI	GRGCYC	2 cut(s)	358, 466
Fsp4HI	GCNGC	2 cut(s)	390, 774
FspBI	CTAG	2 cut(s)	81, 279
GluI	GCNGC	2 cut(s)	390, 774
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	131, 653
HapII	CCGG	1 cut(s)	679
HgaI	GACGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	545
HinfI	GANTC	4 cut(s)	419, 434, 638, 660
HpaII	CCGG	1 cut(s)	679
HphI	GGTGA	3 cut(s)	385, 844, 857
Hpy166II	GTNNAC	2 cut(s)	11, 571
Hpy188I	TCNGA	4 cut(s)	66, 324, 859, 898
Hpy188III	TCNNGA	3 cut(s)	164, 601, 657
Hpy8I	GTNNAC	2 cut(s)	11, 571
HpyAV	CCTTC	6 cut(s)	27, 170, 260, 370, 494, 844
HpyCH4III	ACNGT	3 cut(s)	484, 517, 673
HpyCH4V	TGCA	6 cut(s)	126, 392, 480, 614, 694, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 800
HpyF3I	CTNAG	6 cut(s)	213, 455, 467, 558, 627, 655
Hsp92II	CATG	1 cut(s)	545
KflI	GGGWCCC	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	834
Kzo9I	GATC	2 cut(s)	675, 834
LmnI	GCTCC	1 cut(s)	522
Lsp1109I	GCAGC	2 cut(s)	376, 760
LweI	GCATC	3 cut(s)	274, 760, 790
MaeI	CTAG	2 cut(s)	81, 279
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	2 cut(s)	677, 836
MboI	GATC	2 cut(s)	675, 834
MboII	GAAGA	6 cut(s)	12, 29, 257, 260, 284, 693
MhlI	GDGCHC	3 cut(s)	211, 358, 466
MluCI	AATT	6 cut(s)	52, 159, 257, 546, 620, 697
MlyI	GAGTC	1 cut(s)	428
MnlI	CCTC	6 cut(s)	123, 464, 664, 760, 823, 836
MroXI	GAANNNNTTC	1 cut(s)	818
MseI	TTAA	2 cut(s)	95, 191
MspCI	CTTAAG	1 cut(s)	94
MspI	CCGG	1 cut(s)	679
MspR9I	CCNGG	1 cut(s)	680
Mva1269I	GAATGC	1 cut(s)	588
MwoI	GCNNNNNNNGC	2 cut(s)	398, 800
NciI	CCSGG	1 cut(s)	680
NdeII	GATC	2 cut(s)	675, 834
NlaIII	CATG	1 cut(s)	545
NlaIV	GGNNCC	4 cut(s)	183, 184, 210, 580
NspI	RCATGY	1 cut(s)	545
PciI	ACATGT	1 cut(s)	541
PctI	GAATGC	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	818
PfeI	GAWTC	3 cut(s)	434, 638, 660
PkrI	GCNGC	2 cut(s)	391, 775
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PpuMI	RGGWCCY	1 cut(s)	182
PscI	ACATGT	1 cut(s)	541
Psp124BI	GAGCTC	2 cut(s)	358, 466
Psp5II	RGGWCCY	1 cut(s)	182
PspN4I	GGNNCC	4 cut(s)	183, 184, 210, 580
PspPI	GGNCC	1 cut(s)	182
PspPPI	RGGWCCY	1 cut(s)	182
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SacI	GAGCTC	2 cut(s)	358, 466
SaqAI	TTAA	2 cut(s)	95, 191
SatI	GCNGC	2 cut(s)	390, 774
Sau3AI	GATC	2 cut(s)	675, 834
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	3 cut(s)	211, 358, 466
SfaNI	GCATC	3 cut(s)	274, 760, 790
SinI	GGWCC	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	94, 714
SmoI	CTYRAG	2 cut(s)	94, 714
Sse9I	AATT	6 cut(s)	52, 159, 257, 546, 620, 697
SsiI	CCGC	2 cut(s)	5, 385
SspI	AATATT	1 cut(s)	333
SspMI	CTAG	2 cut(s)	81, 279
SstI	GAGCTC	2 cut(s)	358, 466
StyD4I	CCNGG	1 cut(s)	678
TaaI	ACNGT	3 cut(s)	484, 517, 673
TaqI	TCGA	1 cut(s)	358
TasI	AATT	6 cut(s)	52, 159, 257, 546, 620, 697
TatI	WGTACW	1 cut(s)	10
TfiI	GAWTC	3 cut(s)	434, 638, 660
Tru1I	TTAA	2 cut(s)	95, 191
Tru9I	TTAA	2 cut(s)	95, 191
TscAI	CASTG	1 cut(s)	375
TseI	GCWGC	2 cut(s)	389, 773
TspDTI	ATGAA	6 cut(s)	12, 79, 270, 513, 651, 811
TspRI	CASTG	1 cut(s)	375
Vha464I	CTTAAG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	3 cut(s)	159, 257, 697
XceI	RCATGY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	818
XspI	CTAG	2 cut(s)	81, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.