AT1G73530

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010992
Physical Location & Seq
Reverse (-)
27643609 .. 27645525
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73530.1

Sequence Viewer

Length: 546 bp
ATGGCAATTAGCTTAGGTAGAGTCGTCGTTCCGTCGTGTACCATTTCTGGAGATCGGCTCTTCATACCTAACTTCTCGGCCATCTGCAGCGTCTCTTGTGGACGAATCAATGTCGGAACCGGCGTAATTTCTGCTCGTCGACGCCGTGACATTGGCGGGGTTTTAATATCTAGCTGTCTCTCTACGGATTCATCTTCTTCTCCACCGTCTTCTTCTTCTGGGCCGAAGACGAAACTCTATGTCAGTGGGCTTTCTTTCCGCACAACTGAAGATACCTTACGGGATACATTTGAACAGTTTGGGAACCTTATACACATGAACATGGTGATGGATAAAGTAGCTAATAGACCAAAAGGTTTTGCTTTCCTACGGTATGAAACAGAGGAGGAGGCTATGAAAGCTATTCAAGGGATGCACGGAAAGTTTTTGGATGGAAGGGTAATATTCGTGGAGGAAGCTAAAACCAGATCAGATATGTCCAGAGCAAAACCCAGACGAGACTTCCCCAAACCTCAATCCAAACCTCGCACCTTTCGTACCTGGTAG

Protein Analysis

181

Amino Acids

20.06

Weight (kDa)

10.02

Isoelectric Point (pI)

63.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 79 - 148 1.5e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AciI CCGC 2 cut(s) 156, 259
AcoI YGGCCR 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 142
AfaI GTAC 2 cut(s) 40, 538
AgsI TTSAA 2 cut(s) 293, 407
AjnI CCWGG 1 cut(s) 539
AluBI AGCT 5 cut(s) 12, 174, 341, 401, 458
AluI AGCT 5 cut(s) 12, 174, 341, 401, 458
Alw26I GTCTC 3 cut(s) 97, 182, 492
AoxI GGCC 2 cut(s) 78, 221
ApeKI GCWGC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 337
BarI GAAGNNNNNNTAC 2 cut(s) 261, 293
BbsI GAAGAC 2 cut(s) 201, 233
BbvI GCAGC 1 cut(s) 99
BccI CCATC 3 cut(s) 89, 322, 425
BceAI ACGGC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 541
BciVI GTATCC 1 cut(s) 277
BcoDI GTCTC 3 cut(s) 97, 182, 492
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 85
BfuI GTATCC 1 cut(s) 277
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 541
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 2 cut(s) 118, 305
BmrFI CCNGG 1 cut(s) 541
BmsI GCATC 1 cut(s) 402
BpiI GAAGAC 2 cut(s) 201, 233
BplI GAGNNNNNCTC 2 cut(s) 42, 74
BpmI CTGGAG 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 142
Bse118I RCCGGY 1 cut(s) 119
BseBI CCWGG 1 cut(s) 541
BseGI GGATG 2 cut(s) 417, 436
BseRI GAGGAG 2 cut(s) 398, 401
BseXI GCAGC 1 cut(s) 99
BshFI GGCC 2 cut(s) 80, 223
BsiSI CCGG 1 cut(s) 120
BsmAI GTCTC 3 cut(s) 97, 182, 492
BsmBI CGTCTC 1 cut(s) 97
BsnI GGCC 2 cut(s) 80, 223
Bsp143I GATC 2 cut(s) 52, 467
BspACI CCGC 2 cut(s) 156, 259
BspANI GGCC 2 cut(s) 80, 223
BspLI GGNNCC 2 cut(s) 118, 305
BspMAI CTGCAG 1 cut(s) 89
BspQI GCTCTTC 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 119
BssMI GATC 2 cut(s) 52, 467
BssNI GRCGYC 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 541
Bst4CI ACNGT 3 cut(s) 207, 297, 372
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 13
BstF5I GGATG 2 cut(s) 417, 436
BstKTI GATC 2 cut(s) 55, 470
BstMAI GTCTC 3 cut(s) 97, 182, 492
BstMBI GATC 2 cut(s) 52, 467
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNI CCWGG 1 cut(s) 541
BstSCI CCNGG 1 cut(s) 539
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 99
BstV2I GAAGAC 2 cut(s) 201, 233
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 2 cut(s) 80, 223
BtsCI GGATG 2 cut(s) 417, 436
BtsIMutI CAGTG 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 221
CseI GACGC 2 cut(s) 79, 150
CsiI ACCWGGT 1 cut(s) 539
Csp6I GTAC 2 cut(s) 39, 537
CviAII CATG 2 cut(s) 316, 322
CviQI GTAC 2 cut(s) 39, 537
DdeI CTNAG 1 cut(s) 13
DpnI GATC 2 cut(s) 54, 469
DpnII GATC 2 cut(s) 52, 467
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 539
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 2 cut(s) 319, 325
FaiI YATR 8 cut(s) 65, 240, 311, 317, 323, 375, 395, 476
FatI CATG 2 cut(s) 315, 321
FauI CCCGC 1 cut(s) 149
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 88
FokI GGATG 2 cut(s) 424, 443
Fsp4HI GCNGC 1 cut(s) 88
FspBI CTAG 1 cut(s) 171
GluI GCNGC 1 cut(s) 88
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 2 cut(s) 80, 223
HapII CCGG 1 cut(s) 120
HgaI GACGC 2 cut(s) 79, 150
Hin1I GRCGYC 1 cut(s) 142
Hin1II CATG 2 cut(s) 319, 325
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HinfI GANTC 3 cut(s) 21, 105, 188
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 3 cut(s) 39, 101, 140
Hpy188I TCNGA 2 cut(s) 116, 472
Hpy188III TCNNGA 2 cut(s) 48, 480
Hpy8I GTNNAC 3 cut(s) 39, 101, 140
Hpy99I CGWCG 4 cut(s) 29, 37, 141, 144
HpyAV CCTTC 1 cut(s) 429
HpyCH4III ACNGT 3 cut(s) 207, 297, 372
HpyCH4V TGCA 2 cut(s) 87, 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 1 cut(s) 13
Hsp92I GRCGYC 1 cut(s) 142
Hsp92II CATG 2 cut(s) 319, 325
Kzo9I GATC 2 cut(s) 52, 467
LguI GCTCTTC 1 cut(s) 65
LpnPI CCDG 7 cut(s) 33, 133, 204, 478, 493, 505, 526
Lsp1109I GCAGC 1 cut(s) 99
LweI GCATC 1 cut(s) 402
MabI ACCWGGT 1 cut(s) 539
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 146
MalI GATC 2 cut(s) 54, 469
MboI GATC 2 cut(s) 52, 467
MboII GAAGA 8 cut(s) 52, 186, 189, 201, 204, 207, 238, 281
MluCI AATT 2 cut(s) 6, 126
MlyI GAGTC 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 6 cut(s) 376, 379, 382, 445, 522, 534
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 2 cut(s) 320, 326
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 541
MvaI CCWGG 1 cut(s) 541
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 2 cut(s) 52, 467
NlaIII CATG 2 cut(s) 319, 325
NlaIV GGNNCC 2 cut(s) 118, 305
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 65
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 142, 532
PfeI GAWTC 2 cut(s) 105, 188
PkrI GCNGC 1 cut(s) 89
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 539
PspGI CCWGG 1 cut(s) 539
PspN4I GGNNCC 2 cut(s) 118, 305
PspPI GGNCC 1 cut(s) 221
PstI CTGCAG 1 cut(s) 89
RsaI GTAC 2 cut(s) 40, 538
RsaNI GTAC 2 cut(s) 39, 537
RseI CAYNNNNRTG 2 cut(s) 320, 326
SalI GTCGAC 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 2 cut(s) 52, 467
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 541
SexAI ACCWGGT 1 cut(s) 539
SfaNI GCATC 1 cut(s) 402
SfcI CTRYAG 1 cut(s) 85
SgrDI CGTCGACG 1 cut(s) 138
SmiMI CAYNNNNRTG 2 cut(s) 320, 326
Sse9I AATT 2 cut(s) 6, 126
SsiI CCGC 2 cut(s) 156, 259
SspI AATATT 1 cut(s) 444
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 539
TaaI ACNGT 3 cut(s) 207, 297, 372
TaqI TCGA 1 cut(s) 139
TasI AATT 2 cut(s) 6, 126
TfiI GAWTC 2 cut(s) 105, 188
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 87
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 5 cut(s) 52, 180, 332, 390, 410
TspGWI ACGGA 3 cut(s) 21, 200, 432
TspRI CASTG 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.