Rorug06G0406600

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010992
Physical Location & Seq
Reverse (-)
55002612 .. 55016863
14252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0406600.1

Sequence Viewer

Length: 4347 bp
ATGGAGGACGACTATTATGTGAGCAGCGAGGAAGAAGGCTATTACGATGACGAGGAGGATAATGATGATCCTGAGAATTTGGAGGAGGAGATGATGGCGTACGTTGAGAGTGAGACTCCAAAGTGTGAGGTGTCATCGACCAAGGTAATCTCAAAAGAATCTCTCTTGGCTGCACAGAGGGGCGATGTGCAGAGGGTAATGGATGTGCTGTCGCTGAAAGAGTACCATGCCCGAACCTTGCTCATCCATTATCGTTGGGATGTCGACAAGGTGCTTGCTGTGTATGTAGAGAGGGGGAAAGAGTTACTATACGAAAAGGCTGGTGTGACTATGGCGGAGCATGATGACACATCACAGCTTTCATCTGAGGTTATGTGTGATATTTGCATGGATGAAATTCCGGCTAATGAGGTCACAATCATGGATTGCAATCACGTTTTTTGTAACGAATGTTGGACAGAGCATTTTATTGTGAAAATAAACGAGGGTCAAAGTAGGCGCATTAAATGCATGGCACACAAGTGCAATGCTGTTTGTGACGAAGCAATAATCAGAAATCTGGTCAGTGCAAGGGATCCTAATCTGGCCGAGAAGTTTGATCGTTTTCTTCTGGAATCATATATTGAGGATAATAGAAAGGTGAAGTGGTGCCCGAGTATTCCTCATTGTGGAAATGCTATACGTATTGAGGAAGATGAGTTAATCGAGGTTGAATGTGCATGTGGAAAGCAATTCTGTTTTAGTTGCTTATGTGAAGCACACTCTCCTTGTTCATGCCAAATGTGGGACCACTGGTTGAAGAAGTGCGTAGATGAATCAGAGACTGTTAATTACATTTCAGTCAACACAAAGCATTGCCCAAAATGTAACAAGCTGGTTGAAAAGAATGGAGGATGCAATCTAGTTACCTGTATCTGTGGACAACCATTTTGCTGGCTCTGTGGTGCCCCAACTGGTTCGGATCATACATGGGATTCCATTGCAGGTCATGAGTGTGGACGATTCAAAGAAGACGAGGAGACGGACCTTGAGCAAACCAAGAAGGACCTATTTCGTTACACTCACTACTTCAACCGTTTTCAAGCTCATAAAGATTCTCTTAAGCTTGAAGCTGCGCTGAAGAAAACCGTACAAAGAAAAATAACATATTTGGAAGAAAACTTATCGTCATCGAAAGATTATAGCTGGACAACTGATGCACTCAACAGACTCTTTAGATCAAGGCGAATTATTGCATATTCCTACCCATTTGCATATCACATGTTTGGTGATCTTTTCAAAAAAGAGATGACATTAGAACAAAGGACGATAAAACAGAACTTGTTTGAGGACCAGCAGCAGCAGCTTGAGGCCAGCATGGAGAAGCTTTCTATGTTTACAGAGGAACCTTTTGACCATTATTCGGAGGAGAAACTTCACGATTTAAAATTGAGGATGATCAATCTTTCGACGCTTGTTGATAAGCTCTGCCTGAAATTGTTTGAATGCATTGAATATGATTTGCTGGGCCAACTTCAATTTTCAGTTCACAGAATTGTTTCTTACAACTCGAACGGCGTGGAGAAAGCATCAGAAATTAACAAAGAGAACTTGGAGATAAACAAAAGTTCTCCTACTGACAAATGTAACTACAGAATCTTGTCCTCAATCGACTTTGAGAATAGTCCAGCACCACCGGCCATGGCGAAATCCAGCGCCGACGACCAGGAGCTCCGGCGAGCCTGCGAGGCCGCAATCGAAGGCACCAAGCAGTCCGTGGTCATGTCGATCCGTGTCGCCAAGAGCCGGGGCATGTGGGGGAAGACTCACAAGCTCGGCCGCGACATGGCCAAACCTAGGGTTCTTGCCCTTTCCGTCAAAAACAAAGGCCAGCGGACTAAAGCCTTTCTTCGAGTCTTAAAATATTCCACTGGAGGAGTTCTTGAGCCTGCAAAGTTATACAAGCTAAAGCATCTTTCAAAGGTGGAGGTTTTAACAAGCGACCCTAGTGGATGTACTTTTACTCTGGGTTTTGATAATCTTAGGAGCCAGAGTGTTGCTCCTCCTCAATGGACCATGCGAAACATTGATGACAGGAACCGCCTTTTACTATGTATTTTAAACATATGCAAAGACGCACTGGAACAGCTGCCTAAAGTTGTTGGTATAGATGTCGTCGAGATGGCTCTTTGGGCTAAGGAAAATACACCCGCAATTTCTAGTCAAAAAAACCAGCAAGAGGGAGAGGGACCTGCTGCAGCAACAGTGACTGAACGTGACTTGAAAGTAACTGTTGAGAAAGAACTTGTCTCACAAGCCGAGGAAGAGGACATGGAGGCACTTTTGGGAACTTATGTCATGGGTATTGGTGAAGCAGAGGCATTTTCTGAAAGGTTGAAAAGAGAGCTTCTGGCTCTGGAAGCAGCAAATGTGCATGCCATTTTGGAAAGTGAACCTTTGATCGATGAGGTTTTGCAAGGGATTGAATCAGCAACAAATTGTGTTGATGACATGGATGAATGGTTAAGCATCTTCAATGTGAAACTAAGACACATGAGAGAAGACATTGAGTCGATAGAAACCCGCAATAACAAGTTGGAAACGCAATCTGTAAATAATAAAGCACTCATCGAGGAGCTTGACAAGCTTCTTAAAGGCTTGCATGTCCCTACAGAGTATGCAACATGTTTGACTGGAGGTTCATTTGACGAGGCACGTATGCTTCAAAACATAGAAGCATGTGAGTGGTTAGCTGGTGCTCTACGCAGTCTTGAAGTACCCCATTTGGACCCTATCTATGCAAACATGCGAGCTGTTAAAGAGAAGCGGGCAGAACTTGAAAAATTAAAAGCTACATTTGTCAGAAGAGCTTCTGAGTTCTTGCGAAATTACTTTGCTAGTTTGGTGGATTTCATGATAAGTGACAAGAGCTACTTTTCTCAGCGGGGGCAACTGAAAAGGCCTGATCATGCTGATCTACGGTATAAATGCAGGACATATGCTCGCCTTCTGCAACATTTAAAGACTCTTGATAAGAATTGCCTTGGGCCACTGAGAAAAGCATATTGTAGCTCCCTCAACTTGCTTCTTCGTCGGGAGGCTCGTGAATTTGCAAATGAGCTTCGTGCTAGTACAAAGGCATCAAAAAATCCAACTGTCTGGCTTGAAGCTTCTACTGGTTCTGGTCAAAATATGAATGCTGCAGACACTTCTACTGTTTCTGATGCTTATTCCAAGATGCTAACAATTTTTATCCCACTCCTTGTAGATGAGAGTTCTTTTTTCGCACACTTTATGTGCTTTGAAGTACCTGCACTTGTTCCTCCAGGGGGTACTGCCAATGGAGATAAATCTGAATACGATGATGATGACCCGAATGATGACGATTTGGGAATCATGGACATTGATGACAATGACAGTAAAGCTGGTAAACAAACGGGAGAGCTTGCAGCATTGAATGAATCTCTTCAGGATTTACTAGATGGAATCCAAGAAGACTTTTATGCTGTGGTGGACTGGGCATACAAGATTGATCCTTTACGCTGCATATCAATGCATGGGATTACAGAGCGTTATCTTTCAGGTCAGAAAGCTGATGCAGCAGGATTTGTGCGTCTCCTGCTGGGCGATCTGGAGTCAAGAGTATCAATGCAATTTAGTCGTTTTGTTGATGAAGCATGCCACCAGATAGAAAGAAATGAGCGCAATGTTAGGCAAATGGGTGTCTTGTCATACATCCCAAGATTTGCAACTCTGGCAACGCGAATGGAGCAGTATATCCAGGGACAATCTAGGGATTTAGTTGATCAAGCATACACAAAATTTGTTAGCATAATGTTTGTGACTTTAGAGAAGATTGCACAAACAGATCCAAAATATTCTGATCTTTTCCTCTTAGAGAACTATGCTGCATTTCAGAATAGTTTGTATGACCTAGCAAATGTTGTTCCTACATTGGCCAAATTTTATCACCAAGCAAGTGAAGCTTATGAACAAGCTTGCACACGCCATATCAGTATGATCATATACGCTCAATTTGAACGGCTTTTCCAGTTCGCTAAAAAAATAGAGGATTTGATGTATACAATCGCTCCTGAAGAGATCCCTTTCCAGCTTGGGTTGTCAAAAGTGGATTTGCGGAAGATGTTAAAATATAGTTTATCTGGGCTTGACAAGTCCATCAGTGCAATGTACAAGAAGTTGCAGAAAAACATGACATCAGAAGAATTGCTGCCTTCCTTATGGGATAAATGCAAGAAGGAGTTCCTTGACAAGTATGAAAGTTTTGCTCAACTTGTCAACAAAATCTACCCCACAGAGACCATTCCTACTGTAACAGAGATGAGAGAACTTTTGGCTAACATGTAA

Protein Analysis

1448

Amino Acids

165.46

Weight (kDa)

5.19

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_ARI1 PF21235 58 - 97 4.6e-08 E3 ubiquitin-protein ligase ARIH1, UBA-like domain
IBR PF01485 197 - 259 1.6e-13 IBR domain, a half RING-finger domain
IBR_1 PF22191 282 - 317 2e-06 IBR domain
Rcat_RNF216 PF26200 283 - 350 1.7e-06 RNF216 Rcat domain
Ariadne PF19422 352 - 543 3e-81 Ariadne domain
Sec3-PIP2_bind PF15277 610 - 704 7.7e-15 Exocyst complex component SEC3 N-terminal PIP2 binding PH
Sec3_CC PF09763 785 - 906 6.9e-27 Exocyst complex component Sec3, coiled-coil
Vps52_CC PF04129 815 - 954 6.1e-09 Vps52/Sac2 family, coiled-coil
Sec3_C-term PF20654 1144 - 1431 2.2e-28 Exocyst complex component Sec3, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 974, 2239, 3298
AccB1I GGYRCC 3 cut(s) 648, 944, 1742
AccI GTMKAC 2 cut(s) 264, 4061
AccII CGCG 2 cut(s) 1821, 3742
AclWI GGATC 8 cut(s) 62, 569, 582, 969, 1762, 3506, 3842, 4075
AcoI YGGCCR 5 cut(s) 585, 1677, 1816, 1827, 3936
AcsI RAATTY 5 cut(s) 76, 396, 3086, 3800, 3941
AcuI CTGAAG 3 cut(s) 1139, 3431, 4095
AfaI GTAC 9 cut(s) 101, 224, 1131, 1996, 2757, 3112, 3288, 3313, 4172
AfiI CCNNNNNNNGG 8 cut(s) 668, 784, 1402, 1785, 1825, 1836, 2218, 3308
AflII CTTAAG 1 cut(s) 1100
AflIII ACRYGT 3 cut(s) 1260, 2663, 4341
AhdI GACNNNNNGTC 1 cut(s) 2548
AjnI CCWGG 3 cut(s) 1704, 3304, 3759
AleI CACNNNNGTG 1 cut(s) 520
AloI GAACNNNNNNTCC 2 cut(s) 4011, 4043
Alw21I GWGCWC 2 cut(s) 1713, 2740
Alw26I GTCTC 6 cut(s) 107, 815, 1013, 2293, 3599, 4292
AlwI GGATC 8 cut(s) 62, 569, 582, 969, 1762, 3506, 3842, 4075
AlwNI CAGNNNCTG 2 cut(s) 824, 2249
Ama87I CYCGRG 1 cut(s) 652
ApoI RAATTY 5 cut(s) 76, 396, 3086, 3800, 3941
ArsI GACNNNNNNTTYG 2 cut(s) 912, 944
Asp700I GAANNNNTTC 4 cut(s) 1537, 2848, 3444, 4241
AspA2I CCTAGG 1 cut(s) 1835
AspLEI GCGC 4 cut(s) 501, 1117, 1697, 3684
AspS9I GGNCC 9 cut(s) 787, 1024, 1045, 1330, 1507, 2052, 2228, 2767, 3026
AsuC2I CCSGG 1 cut(s) 1787
AsuHPI GGTGA 4 cut(s) 652, 1280, 2360, 3941
AvaI CYCGRG 1 cut(s) 652
AvaII GGWCC 7 cut(s) 787, 1024, 1045, 1330, 2052, 2228, 2767
AvrII CCTAGG 1 cut(s) 1835
BaeGI GKGCMC 2 cut(s) 653, 949
BalI TGGCCA 2 cut(s) 1829, 3938
BamHI GGATCC 1 cut(s) 574
BanI GGYRCC 3 cut(s) 648, 944, 1742
BanII GRGCYC 1 cut(s) 1713
BauI CACGAG 1 cut(s) 3081
BbsI GAAGAC 4 cut(s) 1017, 1808, 2547, 3480
Bbv12I GWGCWC 2 cut(s) 1713, 2740
BccI CCATC 4 cut(s) 88, 2155, 3455, 4166
BceAI ACGGC 2 cut(s) 1570, 4037
BcgI CGANNNNNNTGC 2 cut(s) 3620, 3654
BciT130I CCWGG 3 cut(s) 1706, 3306, 3761
BclI TGATCA 4 cut(s) 1437, 2944, 3784, 3999
BcnI CCSGG 1 cut(s) 1787
BcoDI GTCTC 6 cut(s) 107, 815, 1013, 2293, 3599, 4292
BfaI CTAG 9 cut(s) 902, 1836, 1986, 2199, 2877, 3108, 3458, 3771, 3914
BfmI CTRYAG 4 cut(s) 1630, 2235, 2649, 3180
BfoI RGCGCY 1 cut(s) 1698
BfrI CTTAAG 1 cut(s) 1100
BfuAI ACCTGC 3 cut(s) 974, 2239, 3298
BglI GCCNNNNNGGC 1 cut(s) 1727
BlnI CCTAGG 1 cut(s) 1835
Bme1390I CCNGG 4 cut(s) 1706, 1787, 3306, 3761
Bme18I GGWCC 7 cut(s) 787, 1024, 1045, 1330, 2052, 2228, 2767
BmeRI GACNNNNNGTC 1 cut(s) 2548
BmeT110I CYCGRG 1 cut(s) 652
BmgT120I GGNCC 9 cut(s) 787, 1024, 1045, 1330, 1507, 2052, 2228, 2767, 3026
BmrFI CCNGG 4 cut(s) 1706, 1787, 3306, 3761
BmrI ACTGGG 1 cut(s) 3505
BmsI GCATC 9 cut(s) 884, 1186, 1577, 1960, 2517, 3128, 3193, 3207, 3565
BmuI ACTGGG 1 cut(s) 3505
BpiI GAAGAC 4 cut(s) 1017, 1808, 2547, 3480
BplI GAGNNNNNCTC 6 cut(s) 100, 132, 646, 678, 2023, 2055
BpmI CTGGAG 4 cut(s) 1932, 2694, 3288, 3632
Bpu10I CCTNAGC 1 cut(s) 2175
BpuEI CTTGAG 3 cut(s) 1049, 1367, 1943
BpuMI CCSGG 1 cut(s) 1787
Bsa29I ATCGAT 1 cut(s) 2442
BsaAI YACGTR 2 cut(s) 683, 2696
BsaBI GATNNNNATC 2 cut(s) 429, 579
BsaI GGTCTC 1 cut(s) 4292
BsaJI CCNNGG 9 cut(s) 141, 1680, 1755, 1786, 1835, 2298, 3022, 3305, 3760
BsaXI ACNNNNNCTCC 4 cut(s) 2017, 2047, 4054, 4084
Bsc4I CCNNNNNNNGG 8 cut(s) 668, 784, 1402, 1785, 1825, 1836, 2218, 3308
Bse118I RCCGGY 1 cut(s) 1675
Bse1I ACTGG 8 cut(s) 797, 958, 1915, 2124, 2677, 3160, 3500, 4030
Bse3DI GCAATG 5 cut(s) 532, 853, 978, 3691, 4173
Bse8I GATNNNNATC 2 cut(s) 429, 579
BseBI CCWGG 3 cut(s) 1706, 3306, 3761
BseCI ATCGAT 1 cut(s) 2442
BseDI CCNNGG 9 cut(s) 141, 1680, 1755, 1786, 1835, 2298, 3022, 3305, 3760
BseGI GGATG 9 cut(s) 208, 243, 265, 397, 899, 1440, 1997, 2500, 3714
BseJI GATNNNNATC 2 cut(s) 429, 579
BseLI CCNNNNNNNGG 8 cut(s) 668, 784, 1402, 1785, 1825, 1836, 2218, 3308
BseMI GCAATG 5 cut(s) 532, 853, 978, 3691, 4173
BseMII CTCAG 5 cut(s) 63, 357, 2844, 2933, 3023
BseNI ACTGG 8 cut(s) 797, 958, 1915, 2124, 2677, 3160, 3500, 4030
BseRI GAGGAG 9 cut(s) 68, 98, 101, 1031, 1421, 1929, 2031, 2034, 2627
BseSI GKGCMC 2 cut(s) 653, 949
BseX3I CGGCCG 1 cut(s) 1816
BseYI CCCAGC 2 cut(s) 1504, 3601
BsgI GTGCAG 3 cut(s) 156, 209, 3276
Bsh1236I CGCG 2 cut(s) 1821, 3742
Bsh1285I CGRYCG 1 cut(s) 1819
BshNI GGYRCC 3 cut(s) 648, 944, 1742
BshVI ATCGAT 1 cut(s) 2442
BsiEI CGRYCG 1 cut(s) 1819
BsiHKAI GWGCWC 2 cut(s) 1713, 2740
BsiHKCI CYCGRG 1 cut(s) 652
BsiSI CCGG 4 cut(s) 401, 1676, 1714, 1786
BsiWI CGTACG 1 cut(s) 99
BslFI GGGAC 4 cut(s) 800, 2241, 2630, 3777
BslI CCNNNNNNNGG 8 cut(s) 668, 784, 1402, 1785, 1825, 1836, 2218, 3308
BsmAI GTCTC 6 cut(s) 107, 815, 1013, 2293, 3599, 4292
BsmBI CGTCTC 2 cut(s) 1013, 3599
BsmFI GGGAC 4 cut(s) 800, 2241, 2630, 3777
BsmI GAATGC 2 cut(s) 1490, 3181
Bso31I GGTCTC 1 cut(s) 4292
BsoBI CYCGRG 1 cut(s) 652
Bsp1286I GDGCHC 4 cut(s) 653, 949, 1713, 2740
Bsp1407I TGTACA 1 cut(s) 4170
Bsp19I CCATGG 1 cut(s) 1680
BspCNI CTCAG 5 cut(s) 64, 358, 2845, 2932, 3024
BspDI ATCGAT 1 cut(s) 2442
BspFNI CGCG 2 cut(s) 1821, 3742
BspHI TCATGA 2 cut(s) 988, 2892
BspMAI CTGCAG 2 cut(s) 2239, 3184
BspMI ACCTGC 3 cut(s) 974, 2239, 3298
BspPI GGATC 8 cut(s) 62, 569, 582, 969, 1762, 3506, 3842, 4075
BspQI GCTCTTC 1 cut(s) 2839
BspT107I GGYRCC 3 cut(s) 648, 944, 1742
BspTI CTTAAG 1 cut(s) 1100
BspTNI GGTCTC 1 cut(s) 4292
BsrDI GCAATG 5 cut(s) 532, 853, 978, 3691, 4173
BsrFI RCCGGY 1 cut(s) 1675
BsrGI TGTACA 1 cut(s) 4170
BsrI ACTGG 8 cut(s) 797, 958, 1915, 2124, 2677, 3160, 3500, 4030
BssAI RCCGGY 1 cut(s) 1675
BssECI CCNNGG 9 cut(s) 141, 1680, 1755, 1786, 1835, 2298, 3022, 3305, 3760
BssNAI GTATAC 1 cut(s) 4062
BssSI CACGAG 1 cut(s) 3081
BssT1I CCWWGG 4 cut(s) 141, 1680, 1835, 3022
Bst1107I GTATAC 1 cut(s) 4062
Bst2BI CACGAG 1 cut(s) 3081
Bst2UI CCWGG 3 cut(s) 1706, 3306, 3761
Bst6I CTCTTC 4 cut(s) 2298, 2839, 3450, 4071
BstAFI CTTAAG 1 cut(s) 1100
BstAPI GCANNNNNTGC 1 cut(s) 507
BstAUI TGTACA 1 cut(s) 4170
BstBAI YACGTR 2 cut(s) 683, 2696
BstDEI CTNAG 9 cut(s) 72, 366, 2021, 2175, 2525, 2853, 2919, 3032, 3874
BstDSI CCRYGG 2 cut(s) 1680, 1755
BstF5I GGATG 9 cut(s) 208, 243, 265, 397, 899, 1440, 1997, 2500, 3714
BstFNI CGCG 2 cut(s) 1821, 3742
BstH2I RGCGCY 1 cut(s) 1698
BstHHI GCGC 4 cut(s) 501, 1117, 1697, 3684
BstMAI GTCTC 6 cut(s) 107, 815, 1013, 2293, 3599, 4292
BstMCI CGRYCG 1 cut(s) 1819
BstNI CCWGG 3 cut(s) 1706, 3306, 3761
BstSCI CCNGG 4 cut(s) 1704, 1785, 3304, 3759
BstSFI CTRYAG 4 cut(s) 1630, 2235, 2649, 3180
BstSLI GKGCMC 2 cut(s) 653, 949
BstSNI TACGTA 1 cut(s) 683
BstUI CGCG 2 cut(s) 1821, 3742
BstV2I GAAGAC 4 cut(s) 1017, 1808, 2547, 3480
BstX2I RGATCY 3 cut(s) 574, 3847, 4080
BstXI CCANNNNNNTGG 2 cut(s) 933, 3138
BstYI RGATCY 3 cut(s) 574, 3847, 4080
BstZ17I GTATAC 1 cut(s) 4062
BstZI CGGCCG 1 cut(s) 1816
Bsu15I ATCGAT 1 cut(s) 2442
BsuTUI ATCGAT 1 cut(s) 2442
BtgI CCRYGG 2 cut(s) 1680, 1755
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 9 cut(s) 208, 243, 265, 397, 899, 1440, 1997, 2500, 3714
BtsIMutI CAGTG 7 cut(s) 571, 790, 1908, 2117, 2250, 3029, 4168
BveI ACCTGC 3 cut(s) 974, 2239, 3298
CaiI CAGNNNCTG 2 cut(s) 824, 2249
CciI TCATGA 2 cut(s) 988, 2892
CfoI GCGC 4 cut(s) 501, 1117, 1697, 3684
Cfr10I RCCGGY 1 cut(s) 1675
Cfr13I GGNCC 9 cut(s) 787, 1024, 1045, 1330, 1507, 2052, 2228, 2767, 3026
ClaI ATCGAT 1 cut(s) 2442
CseI GACGC 3 cut(s) 1459, 2123, 3581
Csp6I GTAC 9 cut(s) 100, 223, 1130, 1995, 2756, 3111, 3287, 3312, 4171
CviQI GTAC 9 cut(s) 100, 223, 1130, 1995, 2756, 3111, 3287, 3312, 4171
DdeI CTNAG 9 cut(s) 72, 366, 2021, 2175, 2525, 2853, 2919, 3032, 3874
DraI TTTAAA 3 cut(s) 1425, 2100, 3000
DriI GACNNNNNGTC 1 cut(s) 2548
EaeI YGGCCR 5 cut(s) 585, 1677, 1816, 1827, 3936
EagI CGGCCG 1 cut(s) 1816
Eam1104I CTCTTC 4 cut(s) 2298, 2839, 3450, 4071
Eam1105I GACNNNNNGTC 1 cut(s) 2548
EarI CTCTTC 4 cut(s) 2298, 2839, 3450, 4071
EciI GGCGGA 1 cut(s) 350
Ecl136II GAGCTC 1 cut(s) 1711
EclXI CGGCCG 1 cut(s) 1816
Eco105I TACGTA 1 cut(s) 683
Eco130I CCWWGG 4 cut(s) 141, 1680, 1835, 3022
Eco147I AGGCCT 1 cut(s) 2941
Eco24I GRGCYC 1 cut(s) 1713
Eco31I GGTCTC 1 cut(s) 4292
Eco47I GGWCC 7 cut(s) 787, 1024, 1045, 1330, 2052, 2228, 2767
Eco52I CGGCCG 1 cut(s) 1816
Eco53kI GAGCTC 1 cut(s) 1711
Eco57I CTGAAG 3 cut(s) 1139, 3431, 4095
Eco88I CYCGRG 1 cut(s) 652
EcoICRI GAGCTC 1 cut(s) 1711
EcoO109I RGGNCCY 2 cut(s) 1045, 2228
EcoRII CCWGG 3 cut(s) 1704, 3304, 3759
EcoT14I CCWWGG 4 cut(s) 141, 1680, 1835, 3022
EcoT22I ATGCAT 3 cut(s) 512, 1490, 3537
EcoT38I GRGCYC 1 cut(s) 1713
ErhI CCWWGG 4 cut(s) 141, 1680, 1835, 3022
Esp3I CGTCTC 2 cut(s) 1013, 3599
FaqI GGGAC 4 cut(s) 800, 2241, 2630, 3777
FauI CCCGC 4 cut(s) 2197, 2570, 2799, 2916
FauNDI CATATG 2 cut(s) 2105, 2977
FbaI TGATCA 4 cut(s) 1437, 2944, 3784, 3999
FblI GTMKAC 2 cut(s) 264, 4061
FokI GGATG 9 cut(s) 215, 230, 272, 404, 906, 1447, 2004, 2507, 3701
FriOI GRGCYC 1 cut(s) 1713
FspBI CTAG 9 cut(s) 902, 1836, 1986, 2199, 2877, 3108, 3458, 3771, 3914
GlaI GCGC 4 cut(s) 500, 1116, 1696, 3683
GsaI CCCAGC 2 cut(s) 1508, 3605
GsuI CTGGAG 4 cut(s) 1932, 2694, 3288, 3632
HaeII RGCGCY 1 cut(s) 1698
HapII CCGG 4 cut(s) 401, 1676, 1714, 1786
HgaI GACGC 3 cut(s) 1459, 2123, 3581
HhaI GCGC 4 cut(s) 501, 1117, 1697, 3684
Hin6I GCGC 4 cut(s) 499, 1115, 1695, 3682
HinP1I GCGC 4 cut(s) 499, 1115, 1695, 3682
HincII GTYRAC 3 cut(s) 265, 844, 4279
HindII GTYRAC 3 cut(s) 265, 844, 4279
HindIII AAGCTT 6 cut(s) 1103, 1364, 2624, 3147, 3963, 3975
HpaII CCGG 4 cut(s) 401, 1676, 1714, 1786
HphI GGTGA 4 cut(s) 652, 1280, 2360, 3941
Hpy99I CGWCG 4 cut(s) 1453, 1703, 2159, 3075
HpyAV CCTTC 6 cut(s) 29, 1036, 1733, 2996, 4224, 4231
HpyCH4IV ACGT 5 cut(s) 102, 435, 682, 2254, 2695
HpyF3I CTNAG 9 cut(s) 72, 366, 2021, 2175, 2525, 2853, 2919, 3032, 3874
HpySE526I ACGT 5 cut(s) 102, 435, 682, 2254, 2695
HspAI GCGC 4 cut(s) 499, 1115, 1695, 3682
Ksp22I TGATCA 4 cut(s) 1437, 2944, 3784, 3999
LguI GCTCTTC 1 cut(s) 2839
LmnI GCTCC 9 cut(s) 337, 1708, 1716, 2025, 2044, 2614, 3056, 3748, 4075
LweI GCATC 9 cut(s) 884, 1186, 1577, 1960, 2517, 3128, 3193, 3207, 3565
MaeI CTAG 9 cut(s) 902, 1836, 1986, 2199, 2877, 3108, 3458, 3771, 3914
MaeII ACGT 5 cut(s) 102, 435, 682, 2254, 2695
MflI RGATCY 3 cut(s) 574, 3847, 4080
MhlI GDGCHC 4 cut(s) 653, 949, 1713, 2740
MlsI TGGCCA 2 cut(s) 1829, 3938
MluNI TGGCCA 2 cut(s) 1829, 3938
MlyI GAGTC 7 cut(s) 109, 1203, 1798, 1902, 2558, 2998, 3623
MmeI TCCRAC 3 cut(s) 434, 2556, 3155
Mox20I TGGCCA 2 cut(s) 1829, 3938
Mph1103I ATGCAT 3 cut(s) 512, 1490, 3537
MroXI GAANNNNTTC 4 cut(s) 1537, 2848, 3444, 4241
MscI TGGCCA 2 cut(s) 1829, 3938
MslI CAYNNNNRTG 5 cut(s) 419, 520, 993, 2722, 3530
Msp20I TGGCCA 2 cut(s) 1829, 3938
MspA1I CMGCKG 3 cut(s) 1873, 2128, 2923
MspCI CTTAAG 1 cut(s) 1100
MspI CCGG 4 cut(s) 401, 1676, 1714, 1786
MspR9I CCNGG 4 cut(s) 1706, 1787, 3306, 3761
Mva1269I GAATGC 2 cut(s) 1490, 3181
MvaI CCWGG 3 cut(s) 1706, 3306, 3761
MvnI CGCG 2 cut(s) 1821, 3742
NciI CCSGG 1 cut(s) 1787
NcoI CCATGG 1 cut(s) 1680
NdeI CATATG 2 cut(s) 2105, 2977
NmeAIII GCCGAG 3 cut(s) 613, 1794, 2323
NmuCI GTSAC 7 cut(s) 325, 412, 536, 2245, 2255, 2900, 3820
NsiI ATGCAT 3 cut(s) 512, 1490, 3537
OliI CACNNNNGTG 1 cut(s) 520
PaeI GCATGC 2 cut(s) 2417, 3660
PagI TCATGA 2 cut(s) 988, 2892
PceI AGGCCT 1 cut(s) 2941
PciI ACATGT 3 cut(s) 1260, 2663, 4341
PciSI GCTCTTC 1 cut(s) 2839
PcsI WCGNNNNNNNCGW 1 cut(s) 3079
PctI GAATGC 2 cut(s) 1490, 3181
PdmI GAANNNNTTC 4 cut(s) 1537, 2848, 3444, 4241
Pfl23II CGTACG 1 cut(s) 99
PleI GAGTC 7 cut(s) 109, 1203, 1798, 1901, 2557, 2998, 3622
PpsI GAGTC 7 cut(s) 109, 1203, 1798, 1901, 2557, 2998, 3622
Ppu21I YACGTR 2 cut(s) 683, 2696
PpuMI RGGWCCY 2 cut(s) 1045, 2228
PscI ACATGT 3 cut(s) 1260, 2663, 4341
Psp124BI GAGCTC 1 cut(s) 1713
Psp5II RGGWCCY 2 cut(s) 1045, 2228
Psp6I CCWGG 3 cut(s) 1704, 3304, 3759
PspFI CCCAGC 2 cut(s) 1504, 3601
PspGI CCWGG 3 cut(s) 1704, 3304, 3759
PspLI CGTACG 1 cut(s) 99
PspPI GGNCC 9 cut(s) 787, 1024, 1045, 1330, 1507, 2052, 2228, 2767, 3026
PspPPI RGGWCCY 2 cut(s) 1045, 2228
PstI CTGCAG 2 cut(s) 2239, 3184
PstNI CAGNNNCTG 2 cut(s) 824, 2249
PsuI RGATCY 3 cut(s) 574, 3847, 4080
PvuII CAGCTG 1 cut(s) 2128
RsaI GTAC 9 cut(s) 101, 224, 1131, 1996, 2757, 3112, 3288, 3313, 4172
RsaNI GTAC 9 cut(s) 100, 223, 1130, 1995, 2756, 3111, 3287, 3312, 4171
RseI CAYNNNNRTG 5 cut(s) 419, 520, 993, 2722, 3530
SacI GAGCTC 1 cut(s) 1713
SalI GTCGAC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 2839
Sau96I GGNCC 9 cut(s) 787, 1024, 1045, 1330, 1507, 2052, 2228, 2767, 3026
SchI GAGTC 7 cut(s) 109, 1203, 1798, 1902, 2558, 2998, 3623
ScrFI CCNGG 4 cut(s) 1706, 1787, 3306, 3761
SduI GDGCHC 4 cut(s) 653, 949, 1713, 2740
SfaNI GCATC 9 cut(s) 884, 1186, 1577, 1960, 2517, 3128, 3193, 3207, 3565
SfcI CTRYAG 4 cut(s) 1630, 2235, 2649, 3180
SinI GGWCC 7 cut(s) 787, 1024, 1045, 1330, 2052, 2228, 2767
SmiMI CAYNNNNRTG 5 cut(s) 419, 520, 993, 2722, 3530
SmlI CTYRAG 4 cut(s) 1028, 1100, 1346, 1922
SmoI CTYRAG 4 cut(s) 1028, 1100, 1346, 1922
SnaBI TACGTA 1 cut(s) 683
SphI GCATGC 2 cut(s) 2417, 3660
SseBI AGGCCT 1 cut(s) 2941
SspI AATATT 2 cut(s) 1904, 3857
SspMI CTAG 9 cut(s) 902, 1836, 1986, 2199, 2877, 3108, 3458, 3771, 3914
SstI GAGCTC 1 cut(s) 1713
StuI AGGCCT 1 cut(s) 2941
StyD4I CCNGG 4 cut(s) 1704, 1785, 3304, 3759
StyI CCWWGG 4 cut(s) 141, 1680, 1835, 3022
TaiI ACGT 5 cut(s) 105, 438, 685, 2257, 2698
TatI WGTACW 3 cut(s) 1994, 3110, 4170
TauI GCSGC 2 cut(s) 1733, 1821
TscAI CASTG 7 cut(s) 571, 797, 1915, 2124, 2250, 3036, 4168
TseFI GTSAC 7 cut(s) 325, 412, 536, 2245, 2255, 2900, 3820
Tsp45I GTSAC 7 cut(s) 325, 412, 536, 2245, 2255, 2900, 3820
TspGWI ACGGA 4 cut(s) 1037, 1744, 1760, 1843
TspRI CASTG 7 cut(s) 571, 797, 1915, 2124, 2250, 3036, 4168
Vha464I CTTAAG 1 cut(s) 1100
VpaK11BI GGWCC 7 cut(s) 787, 1024, 1045, 1330, 2052, 2228, 2767
XapI RAATTY 5 cut(s) 76, 396, 3086, 3800, 3941
XcmI CCANNNNNNNNNTGG 1 cut(s) 1753
XmaJI CCTAGG 1 cut(s) 1835
XmiI GTMKAC 2 cut(s) 264, 4061
XmnI GAANNNNTTC 4 cut(s) 1537, 2848, 3444, 4241
XspI CTAG 9 cut(s) 902, 1836, 1986, 2199, 2877, 3108, 3458, 3771, 3914
Zsp2I ATGCAT 3 cut(s) 512, 1490, 3537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.