Rh7CG006400

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010992
Physical Location & Seq
Forward (+)
480085 .. 482175
2091 bp
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UTR
Exon/CDS
Intron
Rh7CG006400.1

Sequence Viewer

Length: 492 bp
ATGGCGACGACCGTTGTGCTCCCAAGTGCTCCAAGGGCTTGGGTTGATAGCAGAGAGACCCAATTTGCAGAGCACAAAGTGGGCTCTGTAAATTGTGCTTGGCAATGGCAGCGCTGCCTCAGTTATAGGCTTTCGTTTTCTACTACACACAAAAAGAGGAGCTTTTTACCACTGGCGACTTCTTCGTCATCTTCGTTTTCTCCCAAGACCAAGCTCTACGTCAGTGGGCTTTCGTTTCGTACCACTGAAGAAAGTTTGCGAAATGCTTTCCAAAATTTTGGACAGCTTGTAGAAGTCAATCTGGTGATGGACAGGATAGCAAATAGGCCGAGAGGATTTGCTTTCCTCCGCTATGAAACCGAGGAGGAATCTCAAAAGGCTATCGAGGGAATGCATGGAAAGTTTTTGGATGGCAGAGTAATATTTGTTGAAGAAGCAAAGCCCAGATCTGAGCTACGACAAACCCTCAAACAAAACCCAAGACAGTATTAA

Protein Analysis

163

Amino Acids

18.77

Weight (kDa)

9.82

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 72 - 141 1.4e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 184
AciI CCGC 1 cut(s) 349
AcsI RAATTY 1 cut(s) 274
AcuI CTGAAG 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 79
AfaI GTAC 1 cut(s) 241
AfeI AGCGCT 1 cut(s) 113
AgsI TTSAA 1 cut(s) 431
AluBI AGCT 4 cut(s) 162, 214, 286, 454
AluI AGCT 4 cut(s) 162, 214, 286, 454
Alw21I GWGCWC 3 cut(s) 21, 31, 75
Alw26I GTCTC 1 cut(s) 50
Aor51HI AGCGCT 1 cut(s) 113
AoxI GGCC 1 cut(s) 326
ApeKI GCWGC 2 cut(s) 109, 114
ApoI RAATTY 1 cut(s) 274
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 316
BanII GRGCYC 1 cut(s) 86
Bbv12I GWGCWC 3 cut(s) 21, 31, 75
BbvI GCAGC 2 cut(s) 101, 121
BccI CCATC 2 cut(s) 301, 404
BcgI CGANNNNNNTGC 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 50
BfoI RGCGCY 1 cut(s) 115
BglII AGATCT 1 cut(s) 446
BisI GCNGC 2 cut(s) 110, 115
BlsI GCNGC 2 cut(s) 111, 116
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 32, 360
Bse1I ACTGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 32, 360
BseGI GGATG 1 cut(s) 415
BseMI GCAATG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 133, 441
BseNI ACTGG 1 cut(s) 177
BseRI GAGGAG 2 cut(s) 172, 377
BseXI GCAGC 2 cut(s) 101, 121
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 328
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 3 cut(s) 21, 31, 75
BsmAI GTCTC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 1 cut(s) 328
Bso31I GGTCTC 1 cut(s) 50
Bsp1286I GDGCHC 4 cut(s) 21, 31, 75, 86
Bsp143I GATC 1 cut(s) 446
BspACI CCGC 1 cut(s) 349
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 2 cut(s) 132, 442
BspTNI GGTCTC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 110
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 32, 360
BssMI GATC 1 cut(s) 446
BssT1I CCWWGG 1 cut(s) 32
Bst4CI ACNGT 2 cut(s) 13, 486
BstDEI CTNAG 2 cut(s) 119, 450
BstF5I GGATG 1 cut(s) 415
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 1 cut(s) 449
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 446
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 2 cut(s) 35, 109
BstV1I GCAGC 2 cut(s) 101, 121
BstX2I RGATCY 1 cut(s) 446
BstXI CCANNNNNNTGG 2 cut(s) 39, 278
BstYI RGATCY 1 cut(s) 446
BsuRI GGCC 1 cut(s) 328
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 3 cut(s) 170, 229, 243
CfoI GCGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 240
CviAII CATG 1 cut(s) 395
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 2 cut(s) 119, 450
DpnI GATC 1 cut(s) 448
DpnII GATC 1 cut(s) 446
DraIII CACNNNGTG 1 cut(s) 79
DrdI GACNNNNNNGTC 1 cut(s) 184
DseDI GACNNNNNNGTC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 86
Eco31I GGTCTC 1 cut(s) 50
Eco47III AGCGCT 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 1 cut(s) 398
FaiI YATR 3 cut(s) 126, 354, 396
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 1 cut(s) 394
Fnu4HI GCNGC 2 cut(s) 110, 115
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 2 cut(s) 110, 115
GlaI GCGC 1 cut(s) 113
GluI GCNGC 2 cut(s) 110, 115
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 1 cut(s) 328
HhaI GCGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 398
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 1 cut(s) 368
HphI GGTGA 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 451
Hpy99I CGWCG 1 cut(s) 10
HpyCH4III ACNGT 2 cut(s) 13, 486
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 2 cut(s) 68, 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 109
HpyF3I CTNAG 2 cut(s) 119, 450
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 1 cut(s) 398
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 446
LmnI GCTCC 3 cut(s) 24, 34, 159
LpnPI CCDG 4 cut(s) 158, 287, 298, 457
Lsp1109I GCAGC 2 cut(s) 101, 121
MaeII ACGT 1 cut(s) 219
MalI GATC 1 cut(s) 448
MboI GATC 1 cut(s) 446
MboII GAAGA 4 cut(s) 174, 183, 260, 443
MflI RGATCY 1 cut(s) 446
MhlI GDGCHC 4 cut(s) 21, 31, 75, 86
MluCI AATT 3 cut(s) 62, 91, 274
MnlI CCTC 8 cut(s) 128, 150, 326, 355, 356, 358, 379, 476
Mph1103I ATGCAT 1 cut(s) 396
MseI TTAA 1 cut(s) 490
Mva1269I GAATGC 1 cut(s) 396
MwoI GCNNNNNNNGC 2 cut(s) 35, 109
NdeII GATC 1 cut(s) 446
NlaIII CATG 1 cut(s) 398
NmeAIII GCCGAG 1 cut(s) 354
NsiI ATGCAT 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PctI GAATGC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 2 cut(s) 111, 116
PsuI RGATCY 1 cut(s) 446
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 490
SatI GCNGC 2 cut(s) 110, 115
Sau3AI GATC 1 cut(s) 446
SduI GDGCHC 4 cut(s) 21, 31, 75, 86
SetI ASST 5 cut(s) 164, 216, 222, 288, 456
Sse9I AATT 3 cut(s) 62, 91, 274
SsiI CCGC 1 cut(s) 349
SspI AATATT 1 cut(s) 423
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 13, 486
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 384
TasI AATT 3 cut(s) 62, 91, 274
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 1 cut(s) 490
Tru9I TTAA 1 cut(s) 490
TscAI CASTG 3 cut(s) 177, 229, 250
TseI GCWGC 2 cut(s) 109, 114
TspDTI ATGAA 1 cut(s) 369
TspRI CASTG 3 cut(s) 177, 229, 250
XapI RAATTY 1 cut(s) 274
Zsp2I ATGCAT 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.