Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010992

Physical Location & Seq

Genomic Coordinates Reverse (-)

36793040 .. 36795718

Gene Structure 2679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1236600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCAACGGCCTTTGTTATCCTGAGGAGCCCTGCAAATCCATGGCCTTCCAGTTCGAGCAACAGACTCAAACAACAGAAAACATCTTCTCAGGTGGTCGGCGGCTGCTGCACCCTCACTTTCACCTCCTCAATTGCCTGCCGTGCTTGGCGGAATAAGCAGTCCCTTTCCTCCTCTCCCACACACAAAAACCGCACCTTCTCGCCATCAGCGTCTCTTTCTCCTTCTTCTTCTTCTCCCTCCACCTCCACCAAGCTCTACGTCAGCGGGCTTTCGTTTCGTACCACTGAAGAGAGCTTACGAAATGCTTTCCAAAATTTTGGACAACTTGTAGAAGTCAATTTGGTGATGGATAGAATTGCAAATAGGCCAAGAGGCTTTGCTTTTCTCCGCTATGAAACTGAAGAGCAATCTCAAAAGGCTATCGAGGGAATGCACGGAAAGTTTTTGGATGGGAGGGTGATATTTGTTGAAGTTGCAAAGCCGAGATCAGAGCTTCGTCAAGGCCCCAAACAAAACCCAAGACGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

178

Amino Acids

19.73

Weight (kDa)

10.58

Isoelectric Point (pI)

84.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	86 - 155	1.9e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73530
fragaria_vesca	FvH4_5g18110 FvH4_5g18110
malus_domestica	MD06G1236600.v1.1
prunus_persica	Prupe.5G241100_v2.0.a1 Prupe.5G241100_v2.0.a1 Prupe.5G241100_v2.0.a1
pyrus_communis	pycom06g21230
rosa_chinensis	RchiOBHm_Chr7g0177501
rosa_laevigata	RLG00000005532
rosa_multiflora	Rmu_sc0005176.1_g000001 Rmu_sc0028619.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275820
rosa_rugosa	Rorug06G0406600 Rorug06G0406700
rosa_samantha	Rh7AG006100 Rh7BG006000 Rh7CG006400 Rh7DG005900
rosa_wichuraiana	Rw7G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	102, 151, 193, 267, 391
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	2 cut(s)	309, 423
AfaI	GTAC	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	473
AluBI	AGCT	3 cut(s)	256, 297, 496
AluI	AGCT	3 cut(s)	256, 297, 496
Alw26I	GTCTC	1 cut(s)	219
AoxI	GGCC	4 cut(s)	9, 44, 368, 505
ApeKI	GCWGC	2 cut(s)	105, 108
ApoI	RAATTY	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	506
AsuHPI	GGTGA	3 cut(s)	115, 358, 472
AxyI	CCTNAGG	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	32
BarI	GAAGNNNNNNTAC	2 cut(s)	282, 314
BbvI	GCAGC	2 cut(s)	92, 95
BccI	CCATC	3 cut(s)	214, 343, 446
BceAI	ACGGC	2 cut(s)	24, 126
BcoDI	GTCTC	1 cut(s)	219
BisI	GCNGC	3 cut(s)	103, 106, 109
BlsI	GCNGC	3 cut(s)	104, 107, 110
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	2 cut(s)	29, 508
BsaJI	CCNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	51
Bse21I	CCTNAGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	457
BseMII	CTCAG	2 cut(s)	14, 104
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	3 cut(s)	40, 118, 163
BseXI	GCAGC	2 cut(s)	92, 95
BsgI	GTGCAG	1 cut(s)	94
BshFI	GGCC	4 cut(s)	11, 46, 370, 507
BslFI	GGGAC	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	219
BsmBI	CGTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	438
BsnI	GGCC	4 cut(s)	11, 46, 370, 507
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	488
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	5 cut(s)	102, 151, 193, 267, 391
BspANI	GGCC	4 cut(s)	11, 46, 370, 507
BspCNI	CTCAG	2 cut(s)	15, 103
BspLI	GGNNCC	2 cut(s)	29, 508
BspQI	GCTCTTC	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	1 cut(s)	488
BssT1I	CCWWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	528
Bst6I	CTCTTC	2 cut(s)	285, 399
BstC8I	GCNNGC	2 cut(s)	139, 269
BstDEI	CTNAG	2 cut(s)	23, 90
BstDSI	CCRYGG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	1 cut(s)	491
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	488
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 143, 157
BstV1I	GCAGC	2 cut(s)	92, 95
BstXI	CCANNNNNNTGG	1 cut(s)	320
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	4 cut(s)	11, 46, 370, 507
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	139, 269
Cfr13I	GGNCC	1 cut(s)	506
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	1 cut(s)	42
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	2 cut(s)	23, 90
DpnI	GATC	1 cut(s)	490
DpnII	GATC	1 cut(s)	488
Eam1104I	CTCTTC	2 cut(s)	285, 399
EarI	CTCTTC	2 cut(s)	285, 399
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	32
Eco57I	CTGAAG	2 cut(s)	309, 423
Eco81I	CCTNAGG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	1 cut(s)	45
FaiI	YATR	2 cut(s)	43, 396
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	1 cut(s)	41
FauI	CCCGC	1 cut(s)	260
Fnu4HI	GCNGC	3 cut(s)	103, 106, 109
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	3 cut(s)	103, 106, 109
GluI	GCNGC	3 cut(s)	103, 106, 109
HaeIII	GGCC	4 cut(s)	11, 46, 370, 507
HgaI	GACGC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	45
HinfI	GANTC	1 cut(s)	66
HphI	GGTGA	3 cut(s)	115, 358, 472
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	1 cut(s)	22
HpyAV	CCTTC	3 cut(s)	57, 208, 234
HpyCH4III	ACNGT	1 cut(s)	528
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	5 cut(s)	35, 111, 362, 436, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 143, 157
HpyF3I	CTNAG	2 cut(s)	23, 90
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	488
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	5 cut(s)	35, 45, 64, 77, 151
Lsp1109I	GCAGC	2 cut(s)	92, 95
MaeII	ACGT	1 cut(s)	261
MalI	GATC	1 cut(s)	490
MboI	GATC	1 cut(s)	488
MboII	GAAGA	6 cut(s)	78, 219, 222, 225, 302, 416
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	4 cut(s)	132, 316, 340, 357
MlyI	GAGTC	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	438
MwoI	GCNNNNNNNGC	3 cut(s)	108, 143, 157
NcoI	CCATGG	1 cut(s)	41
NdeII	GATC	1 cut(s)	488
NlaIII	CATG	1 cut(s)	45
NlaIV	GGNNCC	2 cut(s)	29, 508
NmeAIII	GCCGAG	1 cut(s)	510
PciSI	GCTCTTC	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PctI	GAATGC	1 cut(s)	438
PkrI	GCNGC	3 cut(s)	104, 107, 110
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	29, 508
PspPI	GGNCC	1 cut(s)	506
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	399
SatI	GCNGC	3 cut(s)	103, 106, 109
Sau3AI	GATC	1 cut(s)	488
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	8 cut(s)	96, 128, 200, 248, 258, 264, 299, 498
Sse9I	AATT	4 cut(s)	132, 316, 340, 357
SsiI	CCGC	5 cut(s)	102, 151, 193, 267, 391
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	528
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	56, 426
TasI	AATT	4 cut(s)	132, 316, 340, 357
TauI	GCSGC	1 cut(s)	105
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	2 cut(s)	105, 108
TspDTI	ATGAA	1 cut(s)	411
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	1 cut(s)	292
XapI	RAATTY	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.