Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010992

Physical Location & Seq

Genomic Coordinates Reverse (-)

18161388 .. 18164969

Gene Structure 3582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G241100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACAACGAGCGTCGTCCTCAGGAGCGCTCCAAATCTATGGGCTTCGGCCGATACCAGTAGCAGGCACAAGCAACAGAAAACATCTGAGTCTCAGGTGGGCTGCTGTATCAGTATTACGGGCAATTCCAGTTGCTCATTAACTTCTTGTGGTTGGCGGAAGCAGTTACTCCCTTGCCTTTCCTCCTCTCCCAGGCACAAACGCCGCACCTTCTTACCTTTGGCGTCTCTTTCGTCTTCTTCTCCTTCCTATTCTCCCAACACCTCTACCAAGCTTTACGTCAGTGGGCTTTCATTTCGTACCACTGAGGAGAGTTTGCGAAATGCTTTCCAGAATTTTGGACAACTTGTAGAAGTCAATCTGGTGATGGATAGAATAGCAAATAGGCCAAGAGGCTTTGCATTTCTCCGCTATGCAACTGAAGAGGAATCTCAAAAGGCTATCGAGGGAATGCACGGAAAGCACTCTTCAACTGTTTTCAAGGCTGAGGTACTCTCTCGGACTATCGGGCTCCAAACAAATGAAGCAACAATATCAGTCTTTGGTAGCATAGCTTATAACCAGCTCATGCACAATGACATATCATCATTTATAGAACATTACCAAGACATTAATTACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

208

Amino Acids

22.97

Weight (kDa)

9.11

Isoelectric Point (pI)

73.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73530
fragaria_vesca	FvH4_5g18110 FvH4_5g18110
malus_domestica	MD06G1236600.v1.1
prunus_persica	Prupe.5G241100_v2.0.a1 Prupe.5G241100_v2.0.a1 Prupe.5G241100_v2.0.a1
pyrus_communis	pycom06g21230
rosa_chinensis	RchiOBHm_Chr7g0177501
rosa_laevigata	RLG00000005532
rosa_multiflora	Rmu_sc0005176.1_g000001 Rmu_sc0028619.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275820
rosa_rugosa	Rorug06G0406600 Rorug06G0406700
rosa_samantha	Rh7AG006100 Rh7BG006000 Rh7CG006400 Rh7DG005900
rosa_wichuraiana	Rw7G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AciI	CCGC	3 cut(s)	157, 205, 409
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	441
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	2 cut(s)	301, 492
AfeI	AGCGCT	1 cut(s)	28
AfiI	CCNNNNNNNGG	2 cut(s)	63, 192
AgsI	TTSAA	2 cut(s)	471, 481
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	3 cut(s)	274, 554, 565
AluI	AGCT	3 cut(s)	274, 554, 565
Alw26I	GTCTC	2 cut(s)	96, 231
Aor51HI	AGCGCT	1 cut(s)	28
AoxI	GGCC	2 cut(s)	48, 386
ApeKI	GCWGC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	334
AseI	ATTAAT	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	376
AxyI	CCTNAGG	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	228
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	96, 231
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	2 cut(s)	103, 205
BlsI	GCNGC	2 cut(s)	104, 206
Bme1390I	CCNGG	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
Bpu10I	CCTNAGC	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 192
Bse1I	ACTGG	2 cut(s)	57, 129
Bse21I	CCTNAGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	191
BseLI	CCNNNNNNNGG	2 cut(s)	63, 192
BseMII	CTCAG	5 cut(s)	34, 78, 107, 297, 477
BseNI	ACTGG	2 cut(s)	57, 129
BseRI	GAGGAG	2 cut(s)	175, 323
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 388
BsiEI	CGRYCG	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	63, 192
BsmAI	GTCTC	2 cut(s)	96, 231
BsmBI	CGTCTC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	2 cut(s)	50, 388
Bsp1286I	GDGCHC	1 cut(s)	513
BspACI	CCGC	3 cut(s)	157, 205, 409
BspANI	GGCC	2 cut(s)	50, 388
BspCNI	CTCAG	5 cut(s)	33, 79, 106, 298, 478
BspLI	GGNNCC	1 cut(s)	512
BsrI	ACTGG	2 cut(s)	57, 129
BssECI	CCNNGG	1 cut(s)	191
BssNI	GRCGYC	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	475, 620
Bst6I	CTCTTC	2 cut(s)	417, 472
BstACI	GRCGYC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	5 cut(s)	20, 87, 93, 306, 486
BstENI	CCTNNNNNAGG	1 cut(s)	190
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstMAI	GTCTC	2 cut(s)	96, 231
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	228
BstXI	CCANNNNNNTGG	2 cut(s)	39, 338
BstZI	CGGCCG	1 cut(s)	48
Bsu36I	CCTNAGG	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	50, 388
BtsIMutI	CAGTG	2 cut(s)	289, 303
Cac8I	GCNNGC	1 cut(s)	65
CfoI	GCGC	1 cut(s)	29
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	300, 491
CviAII	CATG	1 cut(s)	568
CviQI	GTAC	2 cut(s)	300, 491
DdeI	CTNAG	5 cut(s)	20, 87, 93, 306, 486
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	417, 472
EarI	CTCTTC	2 cut(s)	417, 472
EciI	GGCGGA	1 cut(s)	172
EclXI	CGGCCG	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	513
Eco47III	AGCGCT	1 cut(s)	28
Eco52I	CGGCCG	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	441
Eco81I	CCTNAGG	1 cut(s)	20
EcoNI	CCTNNNNNAGG	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	1 cut(s)	571
FaiI	YATR	7 cut(s)	40, 414, 551, 558, 569, 581, 593
FatI	CATG	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	103, 205
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	2 cut(s)	103, 205
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	103, 205
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	50, 388
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	571
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	2 cut(s)	89, 428
HphI	GGTGA	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	88, 501
Hpy188III	TCNNGA	2 cut(s)	22, 331
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	220, 255
HpyCH4III	ACNGT	2 cut(s)	475, 620
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	4 cut(s)	401, 416, 454, 571
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	5 cut(s)	20, 87, 93, 306, 486
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	571
HspAI	GCGC	1 cut(s)	27
LmnI	GCTCC	3 cut(s)	24, 34, 516
Lsp1109I	GCAGC	1 cut(s)	89
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	165
MboII	GAAGA	4 cut(s)	228, 231, 434, 459
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	3 cut(s)	124, 334, 613
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	9 cut(s)	29, 193, 196, 274, 301, 386, 418, 439, 481
MseI	TTAA	3 cut(s)	140, 612, 622
MspR9I	CCNGG	1 cut(s)	193
Mva1269I	GAATGC	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	1 cut(s)	460
NlaIII	CATG	1 cut(s)	571
NlaIV	GGNNCC	1 cut(s)	512
PctI	GAATGC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	104, 206
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PshBI	ATTAAT	1 cut(s)	612
PsiI	TTATAA	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	512
RsaI	GTAC	2 cut(s)	301, 492
RsaNI	GTAC	2 cut(s)	300, 491
SaqAI	TTAA	3 cut(s)	140, 612, 622
SatI	GCNGC	2 cut(s)	103, 205
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	9 cut(s)	99, 212, 220, 266, 276, 282, 492, 556, 567
Sse9I	AATT	3 cut(s)	124, 334, 613
SsiI	CCGC	3 cut(s)	157, 205, 409
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	475, 620
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	444
TasI	AATT	3 cut(s)	124, 334, 613
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	3 cut(s)	140, 612, 622
Tru9I	TTAA	3 cut(s)	140, 612, 622
TscAI	CASTG	2 cut(s)	289, 310
TseI	GCWGC	1 cut(s)	102
TspDTI	ATGAA	2 cut(s)	282, 537
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	2 cut(s)	289, 310
VspI	ATTAAT	1 cut(s)	612
XagI	CCTNNNNNAGG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.