FvH4_5g18110

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010992
Physical Location & Seq
Reverse (-)
10415761 .. 10418376
2616 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18110.t2

Sequence Viewer

Length: 501 bp
ATGGCGACGAGCTTTGTGCTGAGAAGTGCTCCGAAGGCTTGGGTCGATAGAAACAGAGAGACCCAGTTTGCAGAGCAGAAAGTGGGGTCTGTGAATTGTGGTTGGCAATGGCGGCCGTGCCTTAGTTATAGGGTTTCGTTTTGTATTGCACAGAAAAAGAGGAGCTTTGTACCATTGGCGAGTTCTTCTTCTTCGTCTGCTTCGTTTTCTCCGAAGACCAAGCTCTACGTTAGTGGGCTTTCGTTTCGTACCACTGAAGAAAGTTTGCGAAATGCTTTCCAAAATTTTGGACGACTTGTAGAAGTCAATCTGGTGATGGATAGGATAGCAAATAGGCCAAGAGGATTTGCATTCCTCCGCTACGAAACCGAGGAGGAATCTCAAAAGGCTATCAAGGGAATGCATGGAAAGTTTTTGGATGGCAGAGTAATATTTGTTGAAGAGGCAAAGCCCAGATCAGAGCTACGTCAAACCCCCAGACAAAACCCACGACAGTATTAA

Protein Analysis

167

Amino Acids

19.11

Weight (kDa)

10.24

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 75 - 144 2.2e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 112, 358
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 2 cut(s) 171, 250
AgsI TTSAA 1 cut(s) 440
AluBI AGCT 4 cut(s) 12, 165, 223, 463
AluI AGCT 4 cut(s) 12, 165, 223, 463
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 2 cut(s) 113, 335
ApoI RAATTY 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 31
BccI CCATC 2 cut(s) 310, 413
BceAI ACGGC 1 cut(s) 100
BcgI CGANNNNNNTGC 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 53
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BmrI ACTGGG 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 221
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 424
BseMI GCAATG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 2 cut(s) 175, 386
BseX3I CGGCCG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 2 cut(s) 115, 337
BsiEI CGRYCG 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 53
BsmI GAATGC 2 cut(s) 350, 405
BsnI GGCC 2 cut(s) 115, 337
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 455
BspACI CCGC 2 cut(s) 112, 358
BspANI GGCC 2 cut(s) 115, 337
BspCNI CTCAG 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 113
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 1 cut(s) 455
Bst4CI ACNGT 1 cut(s) 495
Bst6I CTCTTC 1 cut(s) 435
BstDEI CTNAG 2 cut(s) 20, 122
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 1 cut(s) 458
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 455
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 2 cut(s) 35, 112
BstV2I GAAGAC 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 287
BstZI CGGCCG 1 cut(s) 113
BsuRI GGCC 2 cut(s) 115, 337
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 252
Csp6I GTAC 2 cut(s) 170, 249
CviAII CATG 1 cut(s) 404
CviQI GTAC 2 cut(s) 170, 249
DdeI CTNAG 2 cut(s) 20, 122
DpnI GATC 1 cut(s) 457
DpnII GATC 1 cut(s) 455
EaeI YGGCCR 1 cut(s) 113
EagI CGGCCG 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
EclXI CGGCCG 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 53
Eco52I CGGCCG 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 405
FaeI CATG 1 cut(s) 407
FaiI YATR 2 cut(s) 129, 405
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 1 cut(s) 403
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 113
HaeIII GGCC 2 cut(s) 115, 337
Hin1II CATG 1 cut(s) 407
HinfI GANTC 1 cut(s) 377
HphI GGTGA 1 cut(s) 325
Hpy188I TCNGA 3 cut(s) 33, 213, 460
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 495
HpyCH4IV ACGT 2 cut(s) 228, 466
HpyCH4V TGCA 4 cut(s) 71, 149, 350, 403
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 112
HpyF3I CTNAG 2 cut(s) 20, 122
HpySE526I ACGT 2 cut(s) 228, 466
Hsp92II CATG 1 cut(s) 407
Kzo9I GATC 1 cut(s) 455
LmnI GCTCC 2 cut(s) 34, 162
LpnPI CCDG 4 cut(s) 77, 296, 466, 490
MaeII ACGT 2 cut(s) 228, 466
MalI GATC 1 cut(s) 457
MboI GATC 1 cut(s) 455
MboII GAAGA 6 cut(s) 177, 180, 183, 226, 269, 452
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 2 cut(s) 94, 283
MnlI CCTC 6 cut(s) 153, 335, 364, 365, 367, 436
Mph1103I ATGCAT 1 cut(s) 405
MseI TTAA 1 cut(s) 499
Mva1269I GAATGC 2 cut(s) 350, 405
MwoI GCNNNNNNNGC 2 cut(s) 35, 112
NdeII GATC 1 cut(s) 455
NlaIII CATG 1 cut(s) 407
NsiI ATGCAT 1 cut(s) 405
PcsI WCGNNNNNNNCGW 2 cut(s) 200, 209
PctI GAATGC 2 cut(s) 350, 405
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 1 cut(s) 114
RsaI GTAC 2 cut(s) 171, 250
RsaNI GTAC 2 cut(s) 170, 249
SaqAI TTAA 1 cut(s) 499
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 1 cut(s) 455
SduI GDGCHC 1 cut(s) 31
SetI ASST 6 cut(s) 14, 167, 225, 231, 465, 469
Sse9I AATT 2 cut(s) 94, 283
SsiI CCGC 2 cut(s) 112, 358
SspI AATATT 1 cut(s) 432
TaaI ACNGT 1 cut(s) 495
TaiI ACGT 2 cut(s) 231, 469
TaqI TCGA 1 cut(s) 45
TasI AATT 2 cut(s) 94, 283
TauI GCSGC 1 cut(s) 115
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 1 cut(s) 499
Tru9I TTAA 1 cut(s) 499
TscAI CASTG 1 cut(s) 259
TspRI CASTG 1 cut(s) 259
XapI RAATTY 1 cut(s) 283
Zsp2I ATGCAT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.