Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010992

Physical Location & Seq

Genomic Coordinates Reverse (-)

67159784 .. 67161839

Gene Structure 2056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCGACGACCCTTGTGCTCTCTAGTGCTCCAAGGGCTTGGGTTGATACCAGAGAGACCCAATTTGCAGAGCACAAAGTGGGCTCTGTAAATTGTGCTTGGCAATGGCAGCGCTGTCTCAGTTATAGGCTTTCGTTTTCTACCACACAGAAAAAGAGGAGCTTTTTACCGCTGGCGACTTCTTCTTCTTCGTCATCTTCGTTTTCTCCCAAGACCAAGCTCTACGTCAGTGGGCTTTCATTTCGTACCACTGAAGAGAGTTTGCGAAATGCTTTCCAACATTTTGGACAACTTGTGGAAGTCAATCTGGTGATGGACAGGATAGCAAATAGGCCGCGAGGATTTGCTTTCCTCCGCTATGAAACCGAGGAGGAATCTCAAAAGGCTATCGAGGGAATGCATGGAAAGTTTTTGGATGGCAGAGTAATATTTGTTGAAGAAGCAAAGCCCAGATCAGAGCTACGACAAACCCTCAAACAAAACCCAAGACAGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

165

Amino Acids

18.98

Weight (kDa)

9.82

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	74 - 143	1.5e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73530
fragaria_vesca	FvH4_5g18110 FvH4_5g18110
malus_domestica	MD06G1236600.v1.1
prunus_persica	Prupe.5G241100_v2.0.a1 Prupe.5G241100_v2.0.a1 Prupe.5G241100_v2.0.a1
pyrus_communis	pycom06g21230
rosa_chinensis	RchiOBHm_Chr7g0177501
rosa_laevigata	RLG00000005532
rosa_multiflora	Rmu_sc0005176.1_g000001 Rmu_sc0028619.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275820
rosa_rugosa	Rorug06G0406600 Rorug06G0406700
rosa_samantha	Rh7AG006100 Rh7BG006000 Rh7CG006400 Rh7DG005900
rosa_wichuraiana	Rw7G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	337
AciI	CCGC	3 cut(s)	170, 335, 355
AcuI	CTGAAG	1 cut(s)	273
AdeI	CACNNNGTG	1 cut(s)	79
AfaI	GTAC	1 cut(s)	247
AfeI	AGCGCT	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	437
AluBI	AGCT	3 cut(s)	162, 220, 460
AluI	AGCT	3 cut(s)	162, 220, 460
Alw21I	GWGCWC	3 cut(s)	21, 31, 75
Alw26I	GTCTC	2 cut(s)	50, 122
Aor51HI	AGCGCT	1 cut(s)	113
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	86
Bbv12I	GWGCWC	3 cut(s)	21, 31, 75
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	2 cut(s)	307, 410
BcgI	CGANNNNNNTGC	1 cut(s)	32
BcoDI	GTCTC	2 cut(s)	50, 122
BfaI	CTAG	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	2 cut(s)	110, 335
BlsI	GCNGC	2 cut(s)	111, 336
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	32, 366
Bse3DI	GCAATG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	32, 366
BseGI	GGATG	1 cut(s)	421
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	133
BseRI	GAGGAG	2 cut(s)	172, 383
BseXI	GCAGC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	334
BsiHKAI	GWGCWC	3 cut(s)	21, 31, 75
BsmAI	GTCTC	2 cut(s)	50, 122
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	334
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	4 cut(s)	21, 31, 75, 86
Bsp143I	GATC	1 cut(s)	452
BspACI	CCGC	3 cut(s)	170, 335, 355
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	32, 366
BssMI	GATC	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	492
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	1 cut(s)	455
BstMAI	GTCTC	2 cut(s)	50, 122
BstMBI	GATC	1 cut(s)	452
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 109
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	121
BstXI	CCANNNNNNTGG	2 cut(s)	39, 284
BsuRI	GGCC	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	235, 249
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	1 cut(s)	401
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	1 cut(s)	454
DpnII	GATC	1 cut(s)	452
DraIII	CACNNNGTG	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	50
Eco47III	AGCGCT	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	32
EcoT22I	ATGCAT	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	1 cut(s)	404
FaiI	YATR	3 cut(s)	126, 360, 402
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	110, 335
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	110, 335
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	2 cut(s)	110, 335
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	334
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	404
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	374
HphI	GGTGA	1 cut(s)	322
Hpy188I	TCNGA	1 cut(s)	457
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	492
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	68, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 109
HpyF3I	CTNAG	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	404
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	452
LmnI	GCTCC	2 cut(s)	34, 159
LpnPI	CCDG	5 cut(s)	64, 158, 293, 304, 463
Lsp1109I	GCAGC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	1 cut(s)	225
MalI	GATC	1 cut(s)	454
MboI	GATC	1 cut(s)	452
MboII	GAAGA	6 cut(s)	174, 177, 180, 189, 266, 449
MhlI	GDGCHC	4 cut(s)	21, 31, 75, 86
MluCI	AATT	2 cut(s)	62, 91
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	7 cut(s)	150, 332, 361, 362, 364, 385, 482
Mph1103I	ATGCAT	1 cut(s)	402
MseI	TTAA	1 cut(s)	496
MspA1I	CMGCKG	1 cut(s)	172
Mva1269I	GAATGC	1 cut(s)	402
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	2 cut(s)	35, 109
NdeII	GATC	1 cut(s)	452
NlaIII	CATG	1 cut(s)	404
NsiI	ATGCAT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PctI	GAATGC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	2 cut(s)	111, 336
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	496
SatI	GCNGC	2 cut(s)	110, 335
Sau3AI	GATC	1 cut(s)	452
SduI	GDGCHC	4 cut(s)	21, 31, 75, 86
SetI	ASST	4 cut(s)	164, 222, 228, 462
Sse9I	AATT	2 cut(s)	62, 91
SsiI	CCGC	3 cut(s)	170, 335, 355
SspI	AATATT	1 cut(s)	429
SspMI	CTAG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	492
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	390
TasI	AATT	2 cut(s)	62, 91
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	496
Tru9I	TTAA	1 cut(s)	496
TscAI	CASTG	2 cut(s)	235, 256
TseI	GCWGC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	228, 375
TspRI	CASTG	2 cut(s)	235, 256
XspI	CTAG	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.