Rh7AG006100

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0010992
Physical Location & Seq
Forward (+)
419380 .. 421473
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG006100.1

Sequence Viewer

Length: 504 bp
ATGGCGACGACCGTTGTGCTCCCAAGTGCTCCAAGGGCTTGGGTTGATAGCAGAGAGAACCAATTTGCAGAGCACAAAGTGGGCTCTGCAAATTGTGCTTGGCAATGGCAGCGCTGCCTCAGTTATAGGCTTTCGTTTTCCACTACACAGAAAAAGAGGAGCTTTTTACCACTGGCGACTTCTTCTTCTTCTTCTTCGTCATCTTCGTTTTCTCCCAAGACCAAGCTCTACGTCAGTGGGCTTTCGTTTCGTACCACTGAAGAAAGTCTGCGAAATGCTTTCCAAAATTTTGGACAGCTTGTGGAAGTCAATCTGGTGATGGACAGGATAGCAAATAGGCCGAGAGGATTTGCTTTCCTCCGCTATGAAACCGAGGAGGAATCTCAAAAGGCTATCGAGGGAATGCATGGAAAGTTTTTGGATGGCAGAGTAATATTTGTTGAAGAAGCAAAGCCCAGATCAGAGCTACGACAAACCCTCAAACAAAACCCAAGACAGTATTAA

Protein Analysis

167

Amino Acids

19.1

Weight (kDa)

9.82

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 76 - 145 1.5e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 361
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 279
AdeI CACNNNGTG 1 cut(s) 79
AfaI GTAC 1 cut(s) 253
AfeI AGCGCT 1 cut(s) 113
AgsI TTSAA 1 cut(s) 443
AluBI AGCT 4 cut(s) 162, 226, 298, 466
AluI AGCT 4 cut(s) 162, 226, 298, 466
Alw21I GWGCWC 3 cut(s) 21, 31, 75
Aor51HI AGCGCT 1 cut(s) 113
AoxI GGCC 1 cut(s) 338
ApeKI GCWGC 2 cut(s) 109, 114
ApoI RAATTY 1 cut(s) 286
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 328
BanII GRGCYC 1 cut(s) 86
Bbv12I GWGCWC 3 cut(s) 21, 31, 75
BbvI GCAGC 2 cut(s) 101, 121
BccI CCATC 2 cut(s) 313, 416
BcgI CGANNNNNNTGC 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 115
BisI GCNGC 2 cut(s) 110, 115
BlsI GCNGC 2 cut(s) 111, 116
BsaJI CCNNGG 2 cut(s) 32, 372
Bse1I ACTGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 32, 372
BseGI GGATG 1 cut(s) 427
BseMI GCAATG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 177
BseRI GAGGAG 2 cut(s) 172, 389
BseXI GCAGC 2 cut(s) 101, 121
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 340
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 3 cut(s) 21, 31, 75
BsmI GAATGC 1 cut(s) 408
BsnI GGCC 1 cut(s) 340
Bsp1286I GDGCHC 4 cut(s) 21, 31, 75, 86
Bsp143I GATC 1 cut(s) 458
BspACI CCGC 1 cut(s) 361
BspANI GGCC 1 cut(s) 340
BspCNI CTCAG 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 110
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 32, 372
BssMI GATC 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 32
Bst4CI ACNGT 2 cut(s) 13, 498
BstAPI GCANNNNNTGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 427
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 1 cut(s) 461
BstMBI GATC 1 cut(s) 458
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 3 cut(s) 35, 95, 109
BstV1I GCAGC 2 cut(s) 101, 121
BstXI CCANNNNNNTGG 2 cut(s) 39, 290
BsuRI GGCC 1 cut(s) 340
BtsCI GGATG 1 cut(s) 427
BtsIMutI CAGTG 3 cut(s) 170, 241, 255
CfoI GCGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 252
CviAII CATG 1 cut(s) 407
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 119
DpnI GATC 1 cut(s) 460
DpnII GATC 1 cut(s) 458
DraIII CACNNNGTG 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 86
Eco47III AGCGCT 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 1 cut(s) 410
FaiI YATR 3 cut(s) 126, 366, 408
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 1 cut(s) 406
Fnu4HI GCNGC 2 cut(s) 110, 115
FokI GGATG 1 cut(s) 434
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 2 cut(s) 110, 115
GlaI GCGC 1 cut(s) 113
GluI GCNGC 2 cut(s) 110, 115
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 1 cut(s) 340
HhaI GCGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 410
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 1 cut(s) 380
HphI GGTGA 1 cut(s) 328
Hpy188I TCNGA 1 cut(s) 463
Hpy99I CGWCG 1 cut(s) 10
HpyCH4III ACNGT 2 cut(s) 13, 498
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 68, 89, 406
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 95, 109
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 1 cut(s) 410
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 458
LmnI GCTCC 3 cut(s) 24, 34, 159
LpnPI CCDG 4 cut(s) 158, 299, 310, 469
Lsp1109I GCAGC 2 cut(s) 101, 121
MaeII ACGT 1 cut(s) 231
MalI GATC 1 cut(s) 460
MboI GATC 1 cut(s) 458
MboII GAAGA 8 cut(s) 174, 177, 180, 183, 186, 195, 272, 455
MhlI GDGCHC 4 cut(s) 21, 31, 75, 86
MluCI AATT 3 cut(s) 62, 91, 286
MnlI CCTC 8 cut(s) 128, 150, 338, 367, 368, 370, 391, 488
Mph1103I ATGCAT 1 cut(s) 408
MseI TTAA 1 cut(s) 502
Mva1269I GAATGC 1 cut(s) 408
MwoI GCNNNNNNNGC 3 cut(s) 35, 95, 109
NdeII GATC 1 cut(s) 458
NlaIII CATG 1 cut(s) 410
NmeAIII GCCGAG 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PctI GAATGC 1 cut(s) 408
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 2 cut(s) 111, 116
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 502
SatI GCNGC 2 cut(s) 110, 115
Sau3AI GATC 1 cut(s) 458
SduI GDGCHC 4 cut(s) 21, 31, 75, 86
SetI ASST 5 cut(s) 164, 228, 234, 300, 468
Sse9I AATT 3 cut(s) 62, 91, 286
SsiI CCGC 1 cut(s) 361
SspI AATATT 1 cut(s) 435
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 13, 498
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 396
TasI AATT 3 cut(s) 62, 91, 286
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 502
Tru9I TTAA 1 cut(s) 502
TscAI CASTG 3 cut(s) 177, 241, 262
TseI GCWGC 2 cut(s) 109, 114
TspDTI ATGAA 1 cut(s) 381
TspRI CASTG 3 cut(s) 177, 241, 262
XapI RAATTY 1 cut(s) 286
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.