Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028619.1

Orthogroup ID

OG0010992

Physical Location & Seq

Genomic Coordinates Reverse (-)

2137 .. 4208

Gene Structure 2072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028619.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggcattggcgacgaccgttgtgctcccaagtgctccaagggcttgggttgatagcagagagaaccaatttgcagagcacaaagtgggctctgcaaattgtgcttggcaatggcagcgctgcctcagttataggctttcgttttgtactacacagaaaaagaggagctttttaccactggcgacttcttcttcttcttcgtcatcttcgttttctcccaagaccaagctctacgtcagtgggctttcgtttcgtaccactgaagaaagtttgcgaaatgctttccaaaattttggacagcttgtagaagtcaatctggtgatggacaggatagcaaataggccgagaggatttgctttcctccgctatgaaaccgaggaggaatctcaaaaggctatcgagggaatgcatggaaagtttttggatggcagagtaatatttgttgaagaagcaaagcccagatcagagctacgacaaaccctcaaacaaaacccaagacagtattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

168

Amino Acids

19.21

Weight (kDa)

9.71

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73530
fragaria_vesca	FvH4_5g18110 FvH4_5g18110
malus_domestica	MD06G1236600.v1.1
prunus_persica	Prupe.5G241100_v2.0.a1 Prupe.5G241100_v2.0.a1 Prupe.5G241100_v2.0.a1
pyrus_communis	pycom06g21230
rosa_chinensis	RchiOBHm_Chr7g0177501
rosa_laevigata	RLG00000005532
rosa_multiflora	Rmu_sc0005176.1_g000001 Rmu_sc0028619.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275820
rosa_rugosa	Rorug06G0406600 Rorug06G0406700
rosa_samantha	Rh7AG006100 Rh7BG006000 Rh7CG006400 Rh7DG005900
rosa_wichuraiana	Rw7G000500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	282
AdeI	CACNNNGTG	1 cut(s)	85
AfaI	GTAC	2 cut(s)	148, 256
AfeI	AGCGCT	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	446
AluBI	AGCT	4 cut(s)	168, 229, 301, 469
AluI	AGCT	4 cut(s)	168, 229, 301, 469
Alw21I	GWGCWC	3 cut(s)	27, 37, 81
Aor51HI	AGCGCT	1 cut(s)	119
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	115, 120
ApoI	RAATTY	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	92
Bbv12I	GWGCWC	3 cut(s)	27, 37, 81
BbvI	GCAGC	2 cut(s)	107, 127
BccI	CCATC	2 cut(s)	316, 419
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BfoI	RGCGCY	1 cut(s)	121
BisI	GCNGC	2 cut(s)	116, 121
BlsI	GCNGC	2 cut(s)	117, 122
BsaJI	CCNNGG	2 cut(s)	38, 375
Bse1I	ACTGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	38, 375
BseGI	GGATG	1 cut(s)	430
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	2 cut(s)	178, 392
BseXI	GCAGC	2 cut(s)	107, 127
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	3 cut(s)	27, 37, 81
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	4 cut(s)	27, 37, 81, 92
Bsp143I	GATC	1 cut(s)	461
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	38, 375
BssMI	GATC	1 cut(s)	461
BssT1I	CCWWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	19, 501
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	430
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	1 cut(s)	464
BstMBI	GATC	1 cut(s)	461
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 101, 115
BstV1I	GCAGC	2 cut(s)	107, 127
BstXI	CCANNNNNNTGG	2 cut(s)	45, 293
BsuRI	GGCC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	3 cut(s)	176, 244, 258
CfoI	GCGC	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	147, 255
CviAII	CATG	1 cut(s)	410
CviQI	GTAC	2 cut(s)	147, 255
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	463
DpnII	GATC	1 cut(s)	461
DraIII	CACNNNGTG	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	92
Eco47III	AGCGCT	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	38
EcoT22I	ATGCAT	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	1 cut(s)	413
FaiI	YATR	3 cut(s)	132, 369, 411
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	1 cut(s)	409
Fnu4HI	GCNGC	2 cut(s)	116, 121
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	116, 121
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	2 cut(s)	116, 121
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	413
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	383
HphI	GGTGA	1 cut(s)	331
Hpy188I	TCNGA	1 cut(s)	466
Hpy99I	CGWCG	1 cut(s)	16
HpyCH4III	ACNGT	2 cut(s)	19, 501
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	3 cut(s)	74, 95, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 101, 115
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	413
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	461
LmnI	GCTCC	3 cut(s)	30, 40, 165
LpnPI	CCDG	4 cut(s)	164, 302, 313, 472
Lsp1109I	GCAGC	2 cut(s)	107, 127
MaeII	ACGT	1 cut(s)	234
MalI	GATC	1 cut(s)	463
MboI	GATC	1 cut(s)	461
MboII	GAAGA	7 cut(s)	180, 183, 186, 189, 198, 275, 458
MhlI	GDGCHC	4 cut(s)	27, 37, 81, 92
MluCI	AATT	3 cut(s)	68, 97, 289
MnlI	CCTC	8 cut(s)	134, 156, 341, 370, 371, 373, 394, 491
Mph1103I	ATGCAT	1 cut(s)	411
MseI	TTAA	1 cut(s)	505
Mva1269I	GAATGC	1 cut(s)	411
MwoI	GCNNNNNNNGC	3 cut(s)	41, 101, 115
NdeII	GATC	1 cut(s)	461
NlaIII	CATG	1 cut(s)	413
NmeAIII	GCCGAG	1 cut(s)	369
NsiI	ATGCAT	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PctI	GAATGC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	117, 122
RsaI	GTAC	2 cut(s)	148, 256
RsaNI	GTAC	2 cut(s)	147, 255
SaqAI	TTAA	1 cut(s)	505
SatI	GCNGC	2 cut(s)	116, 121
Sau3AI	GATC	1 cut(s)	461
SduI	GDGCHC	4 cut(s)	27, 37, 81, 92
SetI	ASST	5 cut(s)	170, 231, 237, 303, 471
Sse9I	AATT	3 cut(s)	68, 97, 289
SsiI	CCGC	1 cut(s)	364
SspI	AATATT	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	19, 501
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	1 cut(s)	399
TasI	AATT	3 cut(s)	68, 97, 289
TatI	WGTACW	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	505
Tru9I	TTAA	1 cut(s)	505
TscAI	CASTG	3 cut(s)	183, 244, 265
TseI	GCWGC	2 cut(s)	115, 120
TspDTI	ATGAA	1 cut(s)	384
TspRI	CASTG	3 cut(s)	183, 244, 265
XapI	RAATTY	1 cut(s)	289
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.