AT1G74580
BHLH Family

pentatricopeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004351
Physical Location & Seq
Forward (+)
28020548 .. 28023905
3358 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G74580.1

Sequence Viewer

Length: 2292 bp
ATGGGTCCTCCTCTGCTTCCGAAACATGTAACTGCAGTTATAAAATGTCAGAAGGATCCTATGAAAGCTCTAGAAATGTTCAATTCGATGAGAAAAGAGGTTGGTTTCAAGCATACTTTATCTACTTACCGCAGTGTCATCGAAAAGCTTGGATATTATGGAAAATTCGAAGCCATGGAAGAGGTTTTAGTGGATATGCGGGAGAATGTTGGTAACCATATGCTTGAAGGGGTTTATGTTGGGGCAATGAAGAATTATGGTAGGAAAGGGAAAGTTCAAGAAGCTGTTAATGTGTTTGAAAGGATGGATTTTTATGATTGTGAGCCTACGGTTTTCTCTTATAATGCTATTATGAGTGTATTGGTTGATAGTGGTTACTTTGATCAAGCTCACAAGGTGTATATGAGGATGCGGGATAGAGGTATTACGCCTGATGTTTACTCGTTTACGATTAGGATGAAGTCGTTTTGTAAGACCAGTCGGCCTCACGCTGCTTTGAGGCTTCTTAATAATATGTCTTCTCAAGGCTGTGAGATGAATGTGGTTGCTTATTGTACTGTGGTTGGTGGGTTTTATGAGGAGAATTTTAAGGCTGAGGGATATGAGTTGTTTGGGAAGATGCTTGCATCGGGTGTTTCGCTTTGTCTTAGTACGTTCAACAAGCTTCTACGTGTTCTTTGCAAGAAAGGAGATGTTAAGGAGTGTGAAAAACTACTTGATAAGGTTATCAAAAGAGGTGTTTTACCGAATCTGTTTACTTATAATTTATTCATTCAAGGGCTTTGTCAGAGAGGTGAGCTTGATGGTGCGGTTCGTATGGTAGGTTGTCTCATAGAACAGGGACCCAAACCTGATGTCATCACGTATAACAATCTTATATATGGCTTATGTAAGAATTCCAAGTTTCAGGAGGCAGAGGTTTACTTGGGGAAAATGGTGAATGAAGGGCTTGAGCCTGATAGTTATACCTATAACACACTAATAGCTGGATATTGCAAAGGTGGGATGGTACAACTTGCAGAAAGGATTGTAGGTGATGCTGTTTTCAATGGATTTGTGCCTGATCAGTTCACATATCGCTCCTTAATTGACGGGTTGTGTCATGAAGGTGAAACAAACCGTGCTTTAGCTTTATTTAATGAGGCCTTAGGGAAAGGGATAAAGCCTAACGTTATTCTTTACAACACACTGATCAAGGGATTGTCTAACCAGGGTATGATTCTAGAGGCTGCTCAGTTGGCGAATGAAATGTCTGAAAAGGGTTTGATTCCTGAGGTACAGACTTTTAACATACTCGTAAATGGACTATGCAAGATGGGATGTGTTTCTGATGCTGATGGTCTTGTTAAAGTCATGATCTCCAAAGGGTACTTTCCTGACATATTTACTTTCAACATTTTGATTCATGGTTATTCTACACAGTTGAAAATGGAAAACGCACTTGAGATATTAGATGTTATGTTGGACAACGGTGTTGATCCTGACGTGTACACTTACAACTCTTTGTTAAATGGTCTCTGCAAAACTTCAAAGTTTGAAGATGTGATGGAAACATATAAAACTATGGTGGAGAAAGGTTGTGCCCCTAACTTATTCACGTTTAATATACTTCTGGAGAGTCTATGTAGATACCGCAAACTAGATGAAGCCTTGGGGTTATTGGAGGAAATGAAAAACAAGAGTGTGAATCCAGATGCGGTTACATTTGGAACGTTGATTGACGGGTTCTGCAAAAACGGAGACTTGGATGGAGCATACACGCTGTTCCGGAAAATGGAAGAGGCTTATAAGGTTTCAAGTTCAACGCCAACATATAATATCATCATTCATGCTTTCACTGAGAAGCTAAATGTTACTATGGCGGAAAAGCTTTTCCAAGAGATGGTTGATCGTTGTCTTGGTCCTGATGGATACACATACCGGCTTATGGTTGATGGTTTTTGCAAAACGGGAAATGTCAATTTGGGGTACAAGTTTCTACTGGAGATGATGGAAAATGGGTTTATTCCATCTCTCACAACGCTTGGACGTGTAATAAACTGTCTTTGTGTGGAGGATAGAGTTTATGAGGCTGCCGGTATTATCCATCGGATGGTCCAGAAAGGACTGGTCCCTGAAGCTGTGAACACCATTTGTGATGTTGACAAAAAGGAGGTGGCTGCTCCTAAGCTTGTCTTGGAGGATTTGTTGAAGAAGAGCTGTATCACGTATTATGCTTACGAACTTCTTTTTGATGGCCTTAGAGATAAGAGGCTACGCAAGAAAAAGGGTTTCACAGTGGTAGCCATATGA

Protein Analysis

763

Amino Acids

85.77

Weight (kDa)

6.39

Isoelectric Point (pI)

22.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 109 - 158 1.7e-13 PPR repeat family
PPR_2 PF13041 153 - 191 2.4e-06 PPR repeat family
PPR_long PF17177 198 - 272 3.7e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 203 - 259 1.7e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 217 - 263 1.9e-12 PPR repeat family
PPR_1 PF12854 245 - 274 2.4e-08 PPR repeat
PPR_1 PF12854 281 - 313 7e-08 PPR repeat
PPR_2 PF13041 284 - 333 1e-16 PPR repeat family
PPR PF01535 287 - 317 8.5e-06 PPR repeat
PPR_1 PF12854 316 - 344 2.3e-09 PPR repeat
PPR_2 PF13041 323 - 368 6.3e-12 PPR repeat family
PPR_3 PF13812 342 - 399 9.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 350 - 381 4.3e-09 PPR repeat
PPR_2 PF13041 354 - 391 1.1e-07 PPR repeat family
PPR_3 PF13812 378 - 434 3.2e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 385 - 418 9e-08 PPR repeat
PPR_2 PF13041 389 - 438 4.6e-15 PPR repeat family
PPR_1 PF12854 420 - 452 2.9e-06 PPR repeat
PPR_2 PF13041 426 - 471 5.2e-11 PPR repeat family
PPR_3 PF13812 452 - 504 1.8e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 455 - 487 5.7e-06 PPR repeat
PPR_2 PF13041 459 - 508 1.8e-17 PPR repeat family
TPR_24 PF23276 461 - 556 3.5e-07 Fungal tetratrico peptide repeats
PPR_long PF17177 477 - 604 1.4e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 487 - 539 8.7e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 490 - 510 1.9e-06 PPR repeat
PPR PF01535 497 - 527 8.4e-07 PPR repeat
PPR_2 PF13041 498 - 543 1.5e-14 PPR repeat family
PPR_1 PF12854 525 - 558 1.1e-10 PPR repeat
PPR_2 PF13041 529 - 578 2.6e-16 PPR repeat family
PPR PF01535 532 - 561 7e-06 PPR repeat
PPR_3 PF13812 553 - 612 3.7e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 561 - 593 9.5e-14 PPR repeat
PPR_2 PF13041 564 - 594 7.6e-07 PPR repeat family
PPR PF01535 567 - 594 1.4e-07 PPR repeat
PPR_2 PF13041 602 - 649 4.3e-12 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 41, 342, 762, 1788
AccB7I CCANNNNNTGG 2 cut(s) 1882, 2092
AccIII TCCGGA 1 cut(s) 1767
AciI CCGC 7 cut(s) 130, 199, 412, 809, 1633, 1697, 1862
AclI AACGTT 2 cut(s) 1170, 1712
AclWI GGATC 3 cut(s) 50, 63, 1472
AcsI RAATTY 3 cut(s) 164, 583, 895
AcuI CTGAAG 1 cut(s) 2136
AdeI CACNNNGTG 1 cut(s) 397
AfaI GTAC 7 cut(s) 556, 652, 1011, 1278, 1370, 1490, 1970
AfiI CCNNNNNNNGG 4 cut(s) 1774, 1882, 1927, 2092
AflIII ACRYGT 4 cut(s) 25, 670, 1485, 2029
AjiI CACGTC 2 cut(s) 1486, 2030
AjnI CCWGG 1 cut(s) 1209
Alw26I GTCTC 3 cut(s) 833, 1520, 1734
AlwI GGATC 3 cut(s) 50, 63, 1472
Aor13HI TCCGGA 1 cut(s) 1767
AoxI GGCC 3 cut(s) 482, 1143, 2236
ApeKI GCWGC 4 cut(s) 491, 1229, 2072, 2159
ApoI RAATTY 3 cut(s) 164, 583, 895
ArsI GACNNNNNNTTYG 4 cut(s) 840, 872, 1235, 1267
AspS9I GGNCC 5 cut(s) 5, 842, 1901, 2095, 2110
AsuHPI GGTGA 4 cut(s) 806, 949, 1046, 1121
AsuII TTCGAA 1 cut(s) 168
AvaII GGWCC 5 cut(s) 5, 842, 1901, 2095, 2110
AxyI CCTNAGG 2 cut(s) 1147, 1272
BaeGI GKGCMC 1 cut(s) 1585
BamHI GGATCC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 510
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 4 cut(s) 478, 1216, 2059, 2146
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciT130I CCWGG 1 cut(s) 1211
BciVI GTATCC 1 cut(s) 1904
BclI TGATCA 3 cut(s) 382, 1063, 1191
BcoDI GTCTC 3 cut(s) 833, 1520, 1734
BfaI CTAG 3 cut(s) 71, 1223, 1640
BfmI CTRYAG 1 cut(s) 33
BfuI GTATCC 1 cut(s) 1904
BisI GCNGC 4 cut(s) 492, 1230, 2073, 2160
BlsI GCNGC 4 cut(s) 493, 1231, 2074, 2161
Bme1390I CCNGG 1 cut(s) 1211
Bme18I GGWCC 5 cut(s) 5, 842, 1901, 2095, 2110
BmgBI CACGTC 2 cut(s) 1486, 2030
BmgT120I GGNCC 5 cut(s) 5, 842, 1901, 2095, 2110
BmiI GGNNCC 5 cut(s) 6, 57, 843, 844, 2112
BmrFI CCNGG 1 cut(s) 1211
BmsI GCATC 6 cut(s) 399, 609, 635, 1027, 1321, 1684
BpiI GAAGAC 1 cut(s) 510
BpmI CTGGAG 2 cut(s) 1634, 2003
Bpu10I CCTNAGC 2 cut(s) 594, 2166
Bpu14I TTCGAA 1 cut(s) 168
BpuEI CTTGAG 3 cut(s) 507, 971, 1463
BsaAI YACGTR 3 cut(s) 671, 864, 2208
BsaI GGTCTC 1 cut(s) 1520
BsaJI CCNNGG 3 cut(s) 174, 1210, 1650
BsaWI WCCGGW 1 cut(s) 1767
BsaXI ACNNNNNCTCC 2 cut(s) 2171, 2201
Bsc4I CCNNNNNNNGG 4 cut(s) 1774, 1882, 1927, 2092
Bse118I RCCGGY 2 cut(s) 1920, 2075
Bse1I ACTGG 3 cut(s) 477, 1986, 2112
Bse21I CCTNAGG 2 cut(s) 1147, 1272
Bse3DI GCAATG 1 cut(s) 252
BseAI TCCGGA 1 cut(s) 1767
BseBI CCWGG 1 cut(s) 1211
BseDI CCNNGG 3 cut(s) 174, 1210, 1650
BseGI GGATG 7 cut(s) 309, 414, 462, 1011, 1325, 1753, 2097
BseLI CCNNNNNNNGG 4 cut(s) 1774, 1882, 1927, 2092
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 4 cut(s) 585, 1247, 1263, 1830
BseNI ACTGG 3 cut(s) 477, 1986, 2112
BseRI GAGGAG 1 cut(s) 593
BseSI GKGCMC 1 cut(s) 1585
BseXI GCAGC 4 cut(s) 478, 1216, 2059, 2146
BshFI GGCC 3 cut(s) 484, 1145, 2238
BsiSI CCGG 3 cut(s) 1768, 1921, 2076
BslFI GGGAC 2 cut(s) 855, 2096
BslI CCNNNNNNNGG 4 cut(s) 1774, 1882, 1927, 2092
BsmAI GTCTC 3 cut(s) 833, 1520, 1734
BsmFI GGGAC 2 cut(s) 855, 2096
BsnI GGCC 3 cut(s) 484, 1145, 2238
Bso31I GGTCTC 1 cut(s) 1520
Bsp119I TTCGAA 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 1585
Bsp13I TCCGGA 1 cut(s) 1767
Bsp1407I TGTACA 1 cut(s) 1488
Bsp143I GATC 7 cut(s) 55, 382, 1063, 1191, 1356, 1477, 1888
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 7 cut(s) 130, 199, 412, 809, 1633, 1697, 1862
BspANI GGCC 3 cut(s) 484, 1145, 2238
BspCNI CTCAG 4 cut(s) 586, 1246, 1264, 1831
BspEI TCCGGA 1 cut(s) 1767
BspHI TCATGA 2 cut(s) 1102, 1353
BspLI GGNNCC 5 cut(s) 6, 57, 843, 844, 2112
BspMAI CTGCAG 1 cut(s) 37
BspPI GGATC 3 cut(s) 50, 63, 1472
BspQI GCTCTTC 1 cut(s) 2189
BspT104I TTCGAA 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 1520
BsrDI GCAATG 1 cut(s) 252
BsrFI RCCGGY 2 cut(s) 1920, 2075
BsrGI TGTACA 1 cut(s) 1488
BsrI ACTGG 3 cut(s) 477, 1986, 2112
BssAI RCCGGY 2 cut(s) 1920, 2075
BssECI CCNNGG 3 cut(s) 174, 1210, 1650
BssMI GATC 7 cut(s) 55, 382, 1063, 1191, 1356, 1477, 1888
BssT1I CCWWGG 2 cut(s) 174, 1650
Bst2UI CCWGG 1 cut(s) 1211
Bst4CI ACNGT 7 cut(s) 331, 559, 1121, 1422, 1472, 2042, 2278
Bst6I CTCTTC 3 cut(s) 174, 1773, 2189
BstAUI TGTACA 1 cut(s) 1488
BstBAI YACGTR 3 cut(s) 671, 864, 2208
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 624
BstDEI CTNAG 8 cut(s) 594, 647, 1147, 1233, 1272, 1839, 2166, 2240
BstDSI CCRYGG 1 cut(s) 174
BstEII GGTNACC 1 cut(s) 212
BstF5I GGATG 7 cut(s) 309, 414, 462, 1011, 1325, 1753, 2097
BstKTI GATC 7 cut(s) 58, 385, 1066, 1194, 1359, 1480, 1891
BstMAI GTCTC 3 cut(s) 833, 1520, 1734
BstMBI GATC 7 cut(s) 55, 382, 1063, 1191, 1356, 1477, 1888
BstMWI GCNNNNNNNGC 1 cut(s) 1238
BstNI CCWGG 1 cut(s) 1211
BstNSI RCATGY 1 cut(s) 29
BstPI GGTNACC 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 1209
BstSFI CTRYAG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 1585
BstV1I GCAGC 4 cut(s) 478, 1216, 2059, 2146
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
Bsu36I CCTNAGG 2 cut(s) 1147, 1272
BsuI GTATCC 1 cut(s) 1904
BsuRI GGCC 3 cut(s) 484, 1145, 2238
BtgI CCRYGG 1 cut(s) 174
BtrI CACGTC 2 cut(s) 1486, 2030
BtsCI GGATG 7 cut(s) 309, 414, 462, 1011, 1325, 1753, 2097
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 4 cut(s) 139, 1187, 1836, 2283
Cac8I GCNNGC 1 cut(s) 624
CciI TCATGA 2 cut(s) 1102, 1353
Cfr10I RCCGGY 2 cut(s) 1920, 2075
Cfr13I GGNCC 5 cut(s) 5, 842, 1901, 2095, 2110
Csp6I GTAC 7 cut(s) 555, 651, 1010, 1277, 1369, 1489, 1969
CviAII CATG 6 cut(s) 26, 175, 1103, 1354, 1406, 1829
CviQI GTAC 7 cut(s) 555, 651, 1010, 1277, 1369, 1489, 1969
DdeI CTNAG 8 cut(s) 594, 647, 1147, 1233, 1272, 1839, 2166, 2240
DpnI GATC 7 cut(s) 57, 384, 1065, 1193, 1358, 1479, 1890
DpnII GATC 7 cut(s) 55, 382, 1063, 1191, 1356, 1477, 1888
DraIII CACNNNGTG 1 cut(s) 397
Eam1104I CTCTTC 3 cut(s) 174, 1773, 2189
EarI CTCTTC 3 cut(s) 174, 1773, 2189
EciI GGCGGA 1 cut(s) 1877
Eco130I CCWWGG 2 cut(s) 174, 1650
Eco147I AGGCCT 1 cut(s) 1145
Eco31I GGTCTC 1 cut(s) 1520
Eco47I GGWCC 5 cut(s) 5, 842, 1901, 2095, 2110
Eco57I CTGAAG 1 cut(s) 2136
Eco81I CCTNAGG 2 cut(s) 1147, 1272
Eco91I GGTNACC 1 cut(s) 212
EcoO109I RGGNCCY 2 cut(s) 5, 842
EcoO65I GGTNACC 1 cut(s) 212
EcoRI GAATTC 1 cut(s) 895
EcoRII CCWGG 1 cut(s) 1209
EcoT14I CCWWGG 2 cut(s) 174, 1650
ErhI CCWWGG 2 cut(s) 174, 1650
FaeI CATG 6 cut(s) 29, 178, 1106, 1357, 1409, 1832
FalI AAGNNNNNCTT 2 cut(s) 2159, 2191
FaqI GGGAC 2 cut(s) 855, 2096
FatI CATG 6 cut(s) 25, 174, 1102, 1353, 1405, 1828
FauI CCCGC 2 cut(s) 192, 405
FauNDI CATATG 2 cut(s) 219, 2288
FbaI TGATCA 3 cut(s) 382, 1063, 1191
Fnu4HI GCNGC 4 cut(s) 492, 1230, 2073, 2160
FokI GGATG 7 cut(s) 316, 421, 469, 1018, 1332, 1760, 2104
Fsp4HI GCNGC 4 cut(s) 492, 1230, 2073, 2160
FspBI CTAG 3 cut(s) 71, 1223, 1640
GluI GCNGC 4 cut(s) 492, 1230, 2073, 2160
GsuI CTGGAG 2 cut(s) 1634, 2003
HaeIII GGCC 3 cut(s) 484, 1145, 2238
HapII CCGG 3 cut(s) 1768, 1921, 2076
Hin1II CATG 6 cut(s) 29, 178, 1106, 1357, 1409, 1832
HincII GTYRAC 1 cut(s) 2143
HindII GTYRAC 1 cut(s) 2143
HindIII AAGCTT 4 cut(s) 146, 662, 1868, 2168
HinfI GANTC 6 cut(s) 748, 1219, 1267, 1402, 1618, 1687
HpaII CCGG 3 cut(s) 1768, 1921, 2076
HphI GGTGA 4 cut(s) 806, 949, 1046, 1121
Hpy166II GTNNAC 9 cut(s) 439, 447, 756, 922, 1071, 1489, 1491, 2125, 2143
Hpy188I TCNGA 6 cut(s) 21, 51, 789, 1255, 1330, 2091
Hpy8I GTNNAC 9 cut(s) 439, 447, 756, 922, 1071, 1489, 1491, 2125, 2143
HpyAV CCTTC 4 cut(s) 46, 221, 938, 1100
HpyCH4III ACNGT 7 cut(s) 331, 559, 1121, 1422, 1472, 2042, 2278
HpyCH4IV ACGT 9 cut(s) 653, 670, 863, 1170, 1485, 1598, 1712, 2029, 2207
HpyCH4V TGCA 9 cut(s) 35, 626, 681, 996, 1019, 1311, 1521, 1731, 1944
HpyF10VI GCNNNNNNNGC 1 cut(s) 1238
HpyF3I CTNAG 8 cut(s) 594, 647, 1147, 1233, 1272, 1839, 2166, 2240
HpySE526I ACGT 9 cut(s) 653, 670, 863, 1170, 1485, 1598, 1712, 2029, 2207
Hsp92II CATG 6 cut(s) 29, 178, 1106, 1357, 1409, 1832
KflI GGGWCCC 1 cut(s) 842
Kpn2I TCCGGA 1 cut(s) 1767
Ksp22I TGATCA 3 cut(s) 382, 1063, 1191
Kzo9I GATC 7 cut(s) 55, 382, 1063, 1191, 1356, 1477, 1888
LguI GCTCTTC 1 cut(s) 2189
LmnI GCTCC 3 cut(s) 1085, 1751, 2167
Lsp1109I GCAGC 4 cut(s) 478, 1216, 2059, 2146
LweI GCATC 6 cut(s) 399, 609, 635, 1027, 1321, 1684
MaeI CTAG 3 cut(s) 71, 1223, 1640
MaeII ACGT 9 cut(s) 653, 670, 863, 1170, 1485, 1598, 1712, 2029, 2207
MaeIII GTNAC 5 cut(s) 28, 212, 374, 1699, 1852
MalI GATC 7 cut(s) 57, 384, 1065, 1193, 1358, 1479, 1890
MboI GATC 7 cut(s) 55, 382, 1063, 1191, 1356, 1477, 1888
MboII GAAGA 8 cut(s) 191, 262, 510, 628, 1550, 1790, 2203, 2206
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 1585
MluCI AATT 8 cut(s) 82, 164, 253, 583, 763, 895, 1086, 1960
MlyI GAGTC 1 cut(s) 1627
MmeI TCCRAC 1 cut(s) 1443
MroI TCCGGA 1 cut(s) 1767
MslI CAYNNNNRTG 1 cut(s) 1107
MspI CCGG 3 cut(s) 1768, 1921, 2076
MspR9I CCNGG 1 cut(s) 1211
MvaI CCWGG 1 cut(s) 1211
MwoI GCNNNNNNNGC 1 cut(s) 1238
NcoI CCATGG 1 cut(s) 174
NdeI CATATG 2 cut(s) 219, 2288
NdeII GATC 7 cut(s) 55, 382, 1063, 1191, 1356, 1477, 1888
NlaIII CATG 6 cut(s) 29, 178, 1106, 1357, 1409, 1832
NlaIV GGNNCC 5 cut(s) 6, 57, 843, 844, 2112
NspI RCATGY 1 cut(s) 29
NspV TTCGAA 1 cut(s) 168
PagI TCATGA 2 cut(s) 1102, 1353
PceI AGGCCT 1 cut(s) 1145
PciI ACATGT 1 cut(s) 25
PciSI GCTCTTC 1 cut(s) 2189
PfeI GAWTC 5 cut(s) 748, 1219, 1267, 1402, 1687
PflMI CCANNNNNTGG 2 cut(s) 1882, 2092
PkrI GCNGC 4 cut(s) 493, 1231, 2074, 2161
PleI GAGTC 1 cut(s) 1626
PpsI GAGTC 1 cut(s) 1626
Ppu21I YACGTR 3 cut(s) 671, 864, 2208
PpuMI RGGWCCY 2 cut(s) 5, 842
PscI ACATGT 1 cut(s) 25
PsiI TTATAA 4 cut(s) 41, 342, 762, 1788
Psp1406I AACGTT 2 cut(s) 1170, 1712
Psp5II RGGWCCY 2 cut(s) 5, 842
Psp6I CCWGG 1 cut(s) 1209
PspEI GGTNACC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 1209
PspN4I GGNNCC 5 cut(s) 6, 57, 843, 844, 2112
PspPI GGNCC 5 cut(s) 5, 842, 1901, 2095, 2110
PspPPI RGGWCCY 2 cut(s) 5, 842
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 7 cut(s) 556, 652, 1011, 1278, 1370, 1490, 1970
RsaNI GTAC 7 cut(s) 555, 651, 1010, 1277, 1369, 1489, 1969
RseI CAYNNNNRTG 1 cut(s) 1107
SapI GCTCTTC 1 cut(s) 2189
SatI GCNGC 4 cut(s) 492, 1230, 2073, 2160
Sau3AI GATC 7 cut(s) 55, 382, 1063, 1191, 1356, 1477, 1888
Sau96I GGNCC 5 cut(s) 5, 842, 1901, 2095, 2110
SchI GAGTC 1 cut(s) 1627
ScrFI CCNGG 1 cut(s) 1211
SduI GDGCHC 1 cut(s) 1585
SfaNI GCATC 6 cut(s) 399, 609, 635, 1027, 1321, 1684
SfcI CTRYAG 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 168
SinI GGWCC 5 cut(s) 5, 842, 1901, 2095, 2110
SmiMI CAYNNNNRTG 1 cut(s) 1107
SmlI CTYRAG 3 cut(s) 522, 950, 1442
SmoI CTYRAG 3 cut(s) 522, 950, 1442
Sse9I AATT 8 cut(s) 82, 164, 253, 583, 763, 895, 1086, 1960
SseBI AGGCCT 1 cut(s) 1145
SsiI CCGC 7 cut(s) 130, 199, 412, 809, 1633, 1697, 1862
SspMI CTAG 3 cut(s) 71, 1223, 1640
StuI AGGCCT 1 cut(s) 1145
StyD4I CCNGG 1 cut(s) 1209
StyI CCWWGG 2 cut(s) 174, 1650
TaaI ACNGT 7 cut(s) 331, 559, 1121, 1422, 1472, 2042, 2278
TaiI ACGT 9 cut(s) 656, 673, 866, 1173, 1488, 1601, 1715, 2032, 2210
TaqI TCGA 3 cut(s) 86, 141, 168
TasI AATT 8 cut(s) 82, 164, 253, 583, 763, 895, 1086, 1960
TatI WGTACW 2 cut(s) 554, 1488
TfiI GAWTC 5 cut(s) 748, 1219, 1267, 1402, 1687
TscAI CASTG 4 cut(s) 139, 1194, 1843, 2283
TseI GCWGC 4 cut(s) 491, 1229, 2072, 2159
TspGWI ACGGA 1 cut(s) 1752
TspRI CASTG 4 cut(s) 139, 1194, 1843, 2283
Van91I CCANNNNNTGG 2 cut(s) 1882, 2092
VpaK11BI GGWCC 5 cut(s) 5, 842, 1901, 2095, 2110
XapI RAATTY 3 cut(s) 164, 583, 895
XbaI TCTAGA 2 cut(s) 70, 1222
XceI RCATGY 1 cut(s) 29
XspI CTAG 3 cut(s) 71, 1223, 1640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.