Rh7BG040300
BHLH Family

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004351
Physical Location & Seq
Forward (+)
2555760 .. 2559376
3617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG040300.1

Sequence Viewer

Length: 2319 bp
ATGAGTCGGGCTTTACTTCCTAAGCATATTTCTGCTGTTGTGAAATGTCAAAAGGATCCTCTCAAAGCGCTTGAGATGTTTAATTCGGTGAAGAAGGAAGATGGGTTTAAGCACACATTGTCAACTTACAAGTGTATGATTGAGAAGCTTGGGTTTCATGGGGAGTTTGAAGCCATGGAGCATGTGCTTGCCGAGATGAGGATGAATATCGATAACAGGTTACTAGAGGGAGTGTACATTGGGGCCATGAGGCATTATGGAAGGAAAGGAAAGATTGAAGAAGCTGTGAATGTGTTTCACCGGATGGATTTTTATAATTGTGAGCCCTCAGTTCAGTCTTATAATGCAATCATGAATATACTGGTTGAGTATGGGTATTTCAATCAATCCCATAAGGTGTATATGAGGATGAGAGATAACGGGATTACCCCAGATGTGTATACTTATACTATACGAATAAAGTGTTTCTGTAGGACTAGTAGGCCTCATGCTGCATTGAGGCTCCTTAATAACATGCCTTCACAGGGGTGTGAGTTCAATGCTGTTGCATATTGTACAGTCATTAGTGGATTTTATGAAGAGAATTATCGGATAGAGGCATATGAATTGTTTGAAGACATGCTTGGGCAAGGTATATGCCCTGATGTTACCACATTTAATAAGCTTATACATACCCTGTCCAAGAAGGGGGATGTCCAAGAAAGCGAAAAACTTCTCAACAAGGTTCTGAAGAGGGGAGTGTCTCCAAATTTGTTTACACTTAATATATTCATTCAAGGGCTGTGCAAAAGAGGTTCCATTGATGGGGCTGTCAGAATGTTAGATGGTTTTGTGAAGGAAGGTCTGACTCCAGATGTTGTCACGTATAATACATTGATCTTTGGTTTGTGTAAAAACTTCAGGGTTGAGGAAGCAGAGTCCTATCTGCGTAAAATGGTGAACAATGGATTTCAGCCTGATGCCTTTACCTACAACAGTATTGTTGATGGATATTGCAAATTGGGCATTATACAGAGAGCAGAAAAGATTCTCAGTGACGCCATCTTCAAGGGGTTTGTGCCTGATGAGTTCACGTATTGCTCTTTAATTAAGGGGTTTTGCCAGGATGGTGACATAGAACGTGCCATAGCAGTGTTTACGGAGGCATTGGGCAAGGGATTAAAGCTTAATATTGTTCTCTTTAACACATTGGTAAAAGGGTTGTCACAGAATGGGCTTATCTTGCAAGCCTTACAATTAATGAATGAGATGTCGGAAAATGGTTGCAGTCCCAATATCTGGACTTACAATTTAGTTATAAATGGGTTGTGCAAGATGGGTTATGTTTCTGATGCCAGTAGTCTTGTTGATGATGCTATTGCCAAAGGTTACCTTCCTGACATATTTACGTTTAATACAATAATTGATGGTTACTGTAAACAGTTGAATCTGAATAATGCTATTGAGATAATAAATAGCATGTGGAGTCATGGTGTTACTCCTGATGTGATCACATATAATACTGTGTTAAATGGCCTTTGCAAGTCTGCAAAATATGAGGATGTGATGTGCACTTTTCAAGCGATGATGGAGAAAGGGTGTGTTCCTAACATCATTACGTATAACATACTTGTAGAAAGCCTTTGCAAAGCTAGGAAAGTAAATGAGGCCCTGGACATGCTACAGGAAATTAGGAACAAGGGCTTGACTCCAGATATTGTTTGTTTTGGCACATTGATGAGTGGTTTGTGCAGCAATGGGGATTTGGATGGAGCATACCATCTATTTAGAAGAATGAAAAGGGAATATGATATATCACCTACAACAGCAACATACAATATCATGATCAATGCTTTGTGTGAAAAACTAGAAATGAGTACTGCAGAAAAGCTTTTTTGTGAGATGTGTGACAGTGACAGTAACAGTGTGCCGGACTGTTTCACGTACCGTGTCATGATTGATGGTTTCTGCAAAGCAGGAAACACTGATTCAGGGTACAATTTCCTCCTGAAAAAGATTGAGAAAGGGTTCATTCCAGCATTGGTGACATTTGGAAGAGTCCTAAATTGTCTTTGCATGAAGCATAGAGTTCATGAAGCTGTTGGTATCATCCACCTGATGGTCCGCAAAGGCATTGTTCCTGAGGTTGTCAATTCAATATTCGAGGTTGATAAGAGGGAAATAGCAGCACCTAAGATTCTTGTAGAAGATTTATTGAAGAAGGGCCATGTAACTTATTCTGCTTATGAGCTTCTATATGATGGAATTAGAGATAAAAAGCTGGTCAAGAAAACAATGAAAGGTTCCACACCACTTACTGCAACTCGACAACAAACTTAG

Protein Analysis

772

Amino Acids

87.15

Weight (kDa)

7.63

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 83 - 119 1.2e-06 PPR repeat family
PPR_2 PF13041 109 - 158 1.6e-12 PPR repeat family
PPR_1 PF12854 140 - 172 6.8e-06 PPR repeat
PPR_2 PF13041 153 - 191 1e-06 PPR repeat family
PPR_2 PF13041 180 - 226 5e-08 PPR repeat family
PPR_long PF17177 197 - 284 2.6e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 203 - 259 4.5e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 214 - 263 1.8e-13 PPR repeat family
PPR_1 PF12854 245 - 275 2.5e-08 PPR repeat
PPR_2 PF13041 252 - 298 7.9e-12 PPR repeat family
PPR_1 PF12854 281 - 313 4.2e-12 PPR repeat
PPR_2 PF13041 284 - 333 1.4e-17 PPR repeat family
PPR PF01535 287 - 317 7.6e-08 PPR repeat
PPR_1 PF12854 315 - 345 6.8e-08 PPR repeat
PPR_2 PF13041 322 - 368 2e-11 PPR repeat family
PPR_1 PF12854 350 - 381 4.6e-10 PPR repeat
PPR_long PF17177 367 - 503 3.7e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 378 - 434 8.1e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 385 - 418 1.5e-06 PPR repeat
PPR_2 PF13041 390 - 438 6.6e-16 PPR repeat family
PPR_1 PF12854 420 - 451 6.4e-10 PPR repeat
PPR_3 PF13812 447 - 504 5.5e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 455 - 487 2e-09 PPR repeat
PPR_2 PF13041 459 - 508 4.7e-17 PPR repeat family
TPR_24 PF23276 463 - 556 4.9e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 489 - 539 2.4e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 491 - 509 2.2e-06 PPR repeat
PPR_2 PF13041 494 - 543 4.1e-16 PPR repeat family
PPR_long PF17177 499 - 609 8e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 525 - 557 2.9e-11 PPR repeat
PPR_2 PF13041 529 - 577 2.2e-13 PPR repeat family
PPR PF01535 532 - 562 9.4e-06 PPR repeat
PPR_3 PF13812 553 - 612 8.1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 560 - 593 1.4e-10 PPR repeat
PPR_2 PF13041 564 - 613 1.5e-14 PPR repeat family
PPR PF01535 567 - 595 6.2e-06 PPR repeat
PPR_1 PF12854 598 - 628 3.8e-07 PPR repeat
PPR_2 PF13041 600 - 651 2.2e-13 PPR repeat family
PPR_1 PF12854 635 - 661 8e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 315, 342, 1298
AccB7I CCANNNNNTGG 2 cut(s) 1278, 2098
AccI GTMKAC 1 cut(s) 440
AciI CCGC 1 cut(s) 2104
AclWI GGATC 2 cut(s) 50, 63
AcsI RAATTY 1 cut(s) 748
AcuI CTGAAG 2 cut(s) 749, 883
AcyI GRCGYC 1 cut(s) 1038
AfaI GTAC 5 cut(s) 236, 556, 1858, 1925, 1976
AfeI AGCGCT 1 cut(s) 69
AfiI CCNNNNNNNGG 6 cut(s) 198, 524, 687, 804, 1278, 2098
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 2 cut(s) 1101, 1650
AjuI GAANNNNNNNTTGG 2 cut(s) 606, 638
AleI CACNNNNGTG 1 cut(s) 526
AluBI AGCT 9 cut(s) 148, 284, 664, 1165, 1631, 1870, 2078, 2230, 2260
AluI AGCT 9 cut(s) 148, 284, 664, 1165, 1631, 1870, 2078, 2230, 2260
Alw21I GWGCWC 1 cut(s) 1553
Alw26I GTCTC 1 cut(s) 747
Alw44I GTGCAC 1 cut(s) 1549
AlwI GGATC 2 cut(s) 50, 63
Aor51HI AGCGCT 1 cut(s) 69
AoxI GGCC 5 cut(s) 243, 482, 1513, 1647, 2203
ApaLI GTGCAC 1 cut(s) 1549
ApeKI GCWGC 3 cut(s) 491, 1731, 2165
ApoI RAATTY 1 cut(s) 748
AseI ATTAAT 1 cut(s) 1238
Asp700I GAANNNNTTC 3 cut(s) 711, 1026, 2006
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 4 cut(s) 243, 1648, 2101, 2203
AsuHPI GGTGA 6 cut(s) 100, 290, 949, 1121, 1788, 2035
AvaII GGWCC 1 cut(s) 2101
AxyI CCTNAGG 1 cut(s) 2121
BaeGI GKGCMC 1 cut(s) 1553
BamHI GGATCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 621
Bbv12I GWGCWC 1 cut(s) 1553
BbvI GCAGC 3 cut(s) 478, 1743, 2177
BciT130I CCWGG 2 cut(s) 1103, 1652
BclI TGATCA 2 cut(s) 1488, 1824
BcoDI GTCTC 1 cut(s) 747
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 4 cut(s) 224, 477, 1632, 1847
BfmI CTRYAG 3 cut(s) 469, 1661, 1860
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 3 cut(s) 492, 1732, 2166
BlsI GCNGC 3 cut(s) 493, 1733, 2167
BmcAI AGTACT 1 cut(s) 1858
Bme1390I CCNGG 2 cut(s) 1103, 1652
Bme18I GGWCC 1 cut(s) 2101
BmgT120I GGNCC 4 cut(s) 243, 1648, 2101, 2203
BmiI GGNNCC 5 cut(s) 57, 244, 503, 796, 2284
BmrFI CCNGG 2 cut(s) 1103, 1652
BmsI GCATC 3 cut(s) 949, 1321, 1342
BpiI GAAGAC 1 cut(s) 621
BpmI CTGGAG 2 cut(s) 834, 1674
Bpu10I CCTNAGC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 92
Bsa29I ATCGAT 1 cut(s) 210
BsaAI YACGTR 4 cut(s) 864, 1074, 1599, 1923
BsaBI GATNNNNATC 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 1038
BsaJI CCNNGG 2 cut(s) 174, 1650
BsaWI WCCGGW 1 cut(s) 300
BsaXI ACNNNNNCTCC 4 cut(s) 1456, 1486, 1562, 1592
Bsc4I CCNNNNNNNGG 6 cut(s) 198, 524, 687, 804, 1278, 2098
Bse1I ACTGG 2 cut(s) 366, 1335
Bse21I CCTNAGG 1 cut(s) 2121
Bse3DI GCAATG 1 cut(s) 1741
Bse8I GATNNNNATC 1 cut(s) 206
BseBI CCWGG 2 cut(s) 1103, 1652
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 174, 1650
BseGI GGATG 8 cut(s) 207, 309, 414, 697, 1111, 1546, 1753, 2088
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 6 cut(s) 198, 524, 687, 804, 1278, 2098
BseMI GCAATG 1 cut(s) 1741
BseMII CTCAG 3 cut(s) 342, 1045, 2112
BseNI ACTGG 2 cut(s) 366, 1335
BseSI GKGCMC 1 cut(s) 1553
BseXI GCAGC 3 cut(s) 478, 1743, 2177
BsgI GTGCAG 1 cut(s) 1750
BshFI GGCC 5 cut(s) 245, 484, 1515, 1649, 2205
BshVI ATCGAT 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 1553
BsiSI CCGG 2 cut(s) 301, 1910
BslFI GGGAC 1 cut(s) 1254
BslI CCNNNNNNNGG 6 cut(s) 198, 524, 687, 804, 1278, 2098
BsmAI GTCTC 1 cut(s) 747
BsmFI GGGAC 1 cut(s) 1254
BsnI GGCC 5 cut(s) 245, 484, 1515, 1649, 2205
Bsp1286I GDGCHC 2 cut(s) 327, 1553
Bsp1407I TGTACA 2 cut(s) 234, 554
Bsp143I GATC 4 cut(s) 55, 876, 1488, 1824
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 1 cut(s) 2104
BspANI GGCC 5 cut(s) 245, 484, 1515, 1649, 2205
BspCNI CTCAG 3 cut(s) 341, 1044, 2113
BspDI ATCGAT 1 cut(s) 210
BspHI TCATGA 4 cut(s) 351, 1821, 1932, 2071
BspLI GGNNCC 5 cut(s) 57, 244, 503, 796, 2284
BspMAI CTGCAG 1 cut(s) 1864
BspPI GGATC 2 cut(s) 50, 63
BsrDI GCAATG 1 cut(s) 1741
BsrGI TGTACA 2 cut(s) 234, 554
BsrI ACTGG 2 cut(s) 366, 1335
BssECI CCNNGG 2 cut(s) 174, 1650
BssMI GATC 4 cut(s) 55, 876, 1488, 1824
BssNAI GTATAC 1 cut(s) 441
BssNI GRCGYC 1 cut(s) 1038
BssT1I CCWWGG 1 cut(s) 174
Bst1107I GTATAC 1 cut(s) 441
Bst2UI CCWGG 2 cut(s) 1103, 1652
Bst6I CTCTTC 3 cut(s) 573, 725, 2029
BstACI GRCGYC 1 cut(s) 1038
BstAUI TGTACA 2 cut(s) 234, 554
BstBAI YACGTR 4 cut(s) 864, 1074, 1599, 1923
BstC8I GCNNGC 2 cut(s) 189, 1227
BstDEI CTNAG 6 cut(s) 21, 328, 1031, 2121, 2172, 2316
BstDSI CCRYGG 1 cut(s) 174
BstEII GGTNACC 1 cut(s) 1367
BstF5I GGATG 8 cut(s) 207, 309, 414, 697, 1111, 1546, 1753, 2088
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 4 cut(s) 58, 879, 1491, 1827
BstMAI GTCTC 1 cut(s) 747
BstMBI GATC 4 cut(s) 55, 876, 1488, 1824
BstMWI GCNNNNNNNGC 2 cut(s) 1002, 1222
BstNI CCWGG 2 cut(s) 1103, 1652
BstNSI RCATGY 5 cut(s) 185, 517, 622, 1462, 1660
BstPI GGTNACC 1 cut(s) 1367
BstSCI CCNGG 2 cut(s) 1101, 1650
BstSFI CTRYAG 3 cut(s) 469, 1661, 1860
BstSLI GKGCMC 1 cut(s) 1553
BstSNI TACGTA 1 cut(s) 1599
BstV1I GCAGC 3 cut(s) 478, 1743, 2177
BstV2I GAAGAC 1 cut(s) 621
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BstZ17I GTATAC 1 cut(s) 441
Bsu15I ATCGAT 1 cut(s) 210
Bsu36I CCTNAGG 1 cut(s) 2121
BsuRI GGCC 5 cut(s) 245, 484, 1515, 1649, 2205
BsuTUI ATCGAT 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 174
BtgZI GCGATG 1 cut(s) 1577
BtsCI GGATG 8 cut(s) 207, 309, 414, 697, 1111, 1546, 1753, 2088
BtsI GCAGTG 1 cut(s) 1137
BtsIMutI CAGTG 5 cut(s) 1039, 1137, 1897, 1909, 1962
Cac8I GCNNGC 2 cut(s) 189, 1227
CciI TCATGA 4 cut(s) 351, 1821, 1932, 2071
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 4 cut(s) 243, 1648, 2101, 2203
ClaI ATCGAT 1 cut(s) 210
CseI GACGC 1 cut(s) 1046
Csp6I GTAC 5 cut(s) 235, 555, 1857, 1924, 1975
CviQI GTAC 5 cut(s) 235, 555, 1857, 1924, 1975
DdeI CTNAG 6 cut(s) 21, 328, 1031, 2121, 2172, 2316
DpnI GATC 4 cut(s) 57, 878, 1490, 1826
DpnII GATC 4 cut(s) 55, 876, 1488, 1824
Eam1104I CTCTTC 3 cut(s) 573, 725, 2029
EarI CTCTTC 3 cut(s) 573, 725, 2029
Eco105I TACGTA 1 cut(s) 1599
Eco130I CCWWGG 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 2101
Eco47III AGCGCT 1 cut(s) 69
Eco57I CTGAAG 2 cut(s) 749, 883
Eco81I CCTNAGG 1 cut(s) 2121
Eco91I GGTNACC 1 cut(s) 1367
EcoO109I RGGNCCY 1 cut(s) 1648
EcoO65I GGTNACC 1 cut(s) 1367
EcoRII CCWGG 2 cut(s) 1101, 1650
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 174
FalI AAGNNNNNCTT 4 cut(s) 606, 638, 1356, 1388
FaqI GGGAC 1 cut(s) 1254
FauNDI CATATG 1 cut(s) 601
FbaI TGATCA 2 cut(s) 1488, 1824
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 3 cut(s) 492, 1732, 2166
FokI GGATG 8 cut(s) 214, 316, 421, 704, 1118, 1553, 1760, 2075
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 3 cut(s) 492, 1732, 2166
FspBI CTAG 4 cut(s) 224, 477, 1632, 1847
GlaI GCGC 1 cut(s) 69
GluI GCNGC 3 cut(s) 492, 1732, 2166
GsuI CTGGAG 2 cut(s) 834, 1674
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 5 cut(s) 245, 484, 1515, 1649, 2205
HapII CCGG 2 cut(s) 301, 1910
HgaI GACGC 1 cut(s) 1046
HhaI GCGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 1038
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HindIII AAGCTT 4 cut(s) 146, 662, 1163, 1868
HpaII CCGG 2 cut(s) 301, 1910
HphI GGTGA 6 cut(s) 100, 290, 949, 1121, 1788, 2035
Hpy166II GTNNAC 9 cut(s) 123, 235, 441, 756, 940, 1071, 1137, 1418, 1551
Hpy188I TCNGA 7 cut(s) 591, 729, 815, 846, 1255, 1330, 1431
Hpy8I GTNNAC 9 cut(s) 123, 235, 441, 756, 940, 1071, 1137, 1418, 1551
HpyAV CCTTC 8 cut(s) 88, 255, 528, 679, 829, 833, 1382, 2194
HpyCH4IV ACGT 6 cut(s) 863, 1073, 1120, 1388, 1598, 1922
HpyF10VI GCNNNNNNNGC 2 cut(s) 1002, 1222
HpyF3I CTNAG 6 cut(s) 21, 328, 1031, 2121, 2172, 2316
HpySE526I ACGT 6 cut(s) 863, 1073, 1120, 1388, 1598, 1922
Hsp92I GRCGYC 1 cut(s) 1038
HspAI GCGC 1 cut(s) 68
Ksp22I TGATCA 2 cut(s) 1488, 1824
Kzo9I GATC 4 cut(s) 55, 876, 1488, 1824
LmnI GCTCC 3 cut(s) 178, 507, 1751
Lsp1109I GCAGC 3 cut(s) 478, 1743, 2177
LweI GCATC 3 cut(s) 949, 1321, 1342
MaeI CTAG 4 cut(s) 224, 477, 1632, 1847
MaeII ACGT 6 cut(s) 863, 1073, 1120, 1388, 1598, 1922
MalI GATC 4 cut(s) 57, 878, 1490, 1826
MboI GATC 4 cut(s) 55, 876, 1488, 1824
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 327, 1553
MlyI GAGTC 6 cut(s) 13, 841, 926, 1474, 1681, 2046
MmeI TCCRAC 1 cut(s) 1233
MroXI GAANNNNTTC 3 cut(s) 711, 1026, 2006
MslI CAYNNNNRTG 3 cut(s) 526, 1130, 1715
MspI CCGG 2 cut(s) 301, 1910
MspR9I CCNGG 2 cut(s) 1103, 1652
MvaI CCWGG 2 cut(s) 1103, 1652
MwoI GCNNNNNNNGC 2 cut(s) 1002, 1222
NcoI CCATGG 1 cut(s) 174
NdeI CATATG 1 cut(s) 601
NdeII GATC 4 cut(s) 55, 876, 1488, 1824
NlaIV GGNNCC 5 cut(s) 57, 244, 503, 796, 2284
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 7 cut(s) 859, 1034, 1109, 1203, 1886, 1892, 2023
NspI RCATGY 5 cut(s) 185, 517, 622, 1462, 1660
OliI CACNNNNGTG 1 cut(s) 526
PacI TTAATTAA 1 cut(s) 1089
PagI TCATGA 4 cut(s) 351, 1821, 1932, 2071
PceI AGGCCT 1 cut(s) 484
PdmI GAANNNNTTC 3 cut(s) 711, 1026, 2006
PfeI GAWTC 4 cut(s) 1027, 1426, 1967, 2176
PflMI CCANNNNNTGG 2 cut(s) 1278, 2098
PkrI GCNGC 3 cut(s) 493, 1733, 2167
PleI GAGTC 6 cut(s) 12, 841, 925, 1473, 1681, 2045
PpsI GAGTC 6 cut(s) 12, 841, 925, 1473, 1681, 2045
Ppu21I YACGTR 4 cut(s) 864, 1074, 1599, 1923
PshBI ATTAAT 1 cut(s) 1238
PsiI TTATAA 3 cut(s) 315, 342, 1298
Psp6I CCWGG 2 cut(s) 1101, 1650
PspEI GGTNACC 1 cut(s) 1367
PspGI CCWGG 2 cut(s) 1101, 1650
PspN4I GGNNCC 5 cut(s) 57, 244, 503, 796, 2284
PspPI GGNCC 4 cut(s) 243, 1648, 2101, 2203
PstI CTGCAG 1 cut(s) 1864
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 5 cut(s) 236, 556, 1858, 1925, 1976
RsaNI GTAC 5 cut(s) 235, 555, 1857, 1924, 1975
RseI CAYNNNNRTG 3 cut(s) 526, 1130, 1715
SatI GCNGC 3 cut(s) 492, 1732, 2166
Sau3AI GATC 4 cut(s) 55, 876, 1488, 1824
Sau96I GGNCC 4 cut(s) 243, 1648, 2101, 2203
ScaI AGTACT 1 cut(s) 1858
SchI GAGTC 6 cut(s) 13, 841, 926, 1474, 1681, 2046
ScrFI CCNGG 2 cut(s) 1103, 1652
SduI GDGCHC 2 cut(s) 327, 1553
SfaNI GCATC 3 cut(s) 949, 1321, 1342
SfcI CTRYAG 3 cut(s) 469, 1661, 1860
SinI GGWCC 1 cut(s) 2101
SmiMI CAYNNNNRTG 3 cut(s) 526, 1130, 1715
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SnaBI TACGTA 1 cut(s) 1599
SpeI ACTAGT 1 cut(s) 476
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 1 cut(s) 2104
SspI AATATT 2 cut(s) 1171, 2139
SspMI CTAG 4 cut(s) 224, 477, 1632, 1847
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 2 cut(s) 1101, 1650
StyI CCWWGG 1 cut(s) 174
TaiI ACGT 6 cut(s) 866, 1076, 1123, 1391, 1601, 1925
TaqI TCGA 3 cut(s) 210, 2142, 2305
TatI WGTACW 3 cut(s) 234, 554, 1856
TfiI GAWTC 4 cut(s) 1027, 1426, 1967, 2176
TscAI CASTG 5 cut(s) 1039, 1137, 1897, 1909, 1969
TseFI GTSAC 7 cut(s) 859, 1034, 1109, 1203, 1886, 1892, 2023
TseI GCWGC 3 cut(s) 491, 1731, 2165
Tsp45I GTSAC 7 cut(s) 859, 1034, 1109, 1203, 1886, 1892, 2023
TspGWI ACGGA 1 cut(s) 1154
TspRI CASTG 5 cut(s) 1039, 1137, 1897, 1909, 1969
Van91I CCANNNNNTGG 2 cut(s) 1278, 2098
VneI GTGCAC 1 cut(s) 1549
VpaK11BI GGWCC 1 cut(s) 2101
VspI ATTAAT 1 cut(s) 1238
XapI RAATTY 1 cut(s) 748
XceI RCATGY 5 cut(s) 185, 517, 622, 1462, 1660
XmiI GTMKAC 1 cut(s) 440
XmnI GAANNNNTTC 3 cut(s) 711, 1026, 2006
XspI CTAG 4 cut(s) 224, 477, 1632, 1847
ZrmI AGTACT 1 cut(s) 1858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.