Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004351

Physical Location & Seq

Genomic Coordinates Reverse (-)

8516126 .. 8519849

Gene Structure 3724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGAGTCGTCCTTTACTTCCTAAGCATGTTTCTGCTGTTGTAATGTGTCAAAAGGATCCTTTCAAAGCACTGGAGATGTTTAATTCGGTGAAGAAGGAAGATGGGTTTAAGCACACATTGTCAACTTACAAGTGTATGATTGAGAAATTTGGGTTTCATGGGGAGTTTGAAGCCATGGAGCATGTGCTTGCTGAGATGAGGATGAATATTGATAACAGGTTACTAGAAGGAGTGTACATTGGAGCCATGAGGCATTATGGAAGGAAAGGAAAGATTGAAGAAGCTGTGAATGTGTTTCACCGGATGGACTTTTATAATTGTGAGCCGTCTGTTCAGTCGTATAATGCAATCATGAATATACTGGTTGAGTATGGGTATTTCAATCAATCCCATAAGGTGTATATGAACATGATAGGTAACGGGATTATTCCAGATGTGTATACTTATACAATACGAATAAAGTGTTTCTGTAGGACTAGTCGACCTCAAGCTGCATTGAGGCTTCTTAATAACATGCCTTCGCAGGGCTGTGAGTTCAACGCTGTTGCATATTGTACAGTCATCAGTGGGTTTTATGAAGGAAACTACCAAATTGAGGCATGTGAATTGTTTGAAGTCATGCTTGGGAAAGGTATGTGCCCTGATGTTACCACATTCAATAAGCTTATACACACCCTGTCCAAGAAGGGGGATGTCCAAGAAACCGAAAAGCTTCTCAACAAGGTTATGAAGAGGGGAGTGTCTCCAAATTTGTTTACACTTAATATTTTCATTCAAGGGCTGTGCAAAAGAGGATCTCTTAATGGGGCTGTCAGAATGTTAGATGGTTTTATGAAGGAAGGTCTAACTCCAGATGTTGTCACCTATAATACATTGATCTTTGGCTTGTGTAAAAACTTTAAGGTTGAGGAAGCGGAGTCCTATATGCGTAAAATGGTGAACAATGGATTTCAGCCAGATACCTTTACCTACAACAGTATAATTGATGGATATTGCAAATTGGGCATGATACAGAAAGCAGATAAGATTCTCAGTGACGCCATTTTCAAGGGGTTTGTACCTGATGACTTCACATATTGCTCTTTAATAAAGGGGGTTTTCCAGGATGGCGACGCAGACCGTGCCATAGCTGTGTTTAAGGAGGCAATGGGCAAGGGTTTAAAGCTTAATATTGGTCTATTTAACACATTGGTAAAAGGGTTGTCAGAGAATGGGCTTATCTTGCAAGCCTTACAACTGATGAATGAGATGTTGGAAAAGGGTTGCAGTCCCAATATCTGGACTTACAACTTAGTTATAAATGGGTTGTGCAAGATGGGTTATGTGTCTGATGCCAGTAGACTTGTTGATGATGCTATTGCCAAAGGTTACCTTCCTGACATATTTACGTTTAATACACTAATTGATGGTTACTGTAAACAGTTGAATCTGAATAATGCGATTGAGATAATAAATAGCATGTGGAGTCATGGTGTTACTCCTGATGTGATCACATATAATACTGTGTTAAATGGTCTCTGCAAGTCTGCAAAATACGAGGATGTGATGTGCACTTTTCAAGCGATGATGGAGAAAGGGTGTATTCCTAACATCATTACGTATAACATAGTTGTAGAAAGCCTTTGCAAAGCTCGGAAAGTAAATGAGGCCTTGGACATGCTACAGGAAATAAGGAACAAGGGCTTGACTCCAGATATTGTTTGTTTTGGCACATTGATCAGTGGTTTGTGCAGCAATGGGGATTTGGATGGAGCGTACCATCTATTTCGAAGAATGAAACAGGAATATGATATATCACCTACAACTGCAACATACAATATCATGATCAATGCTTTATGTGGAAAGCTAGAAATGAGTACCGCAGAAAAGCTATTTTGTGAGATGTGTGACGGCGACAGTAACAGTGTGCCAGACTGTTTCACGTATCGTGTCATGATTGATGGTTTCTGCAAAGCAGGAAACACTGATTTAGGGTACAATTTTCTCCTGAAAACGATTGAGAAGGGGTTCATTCCAGCATTGGTGACATTTGGAAGAGTGCTGAATTGTCTTTGCATGAAGCATAGAGTTCACGAAGCTGTTGGTATCATCCACCTGATGGTGCGCAAAGGCATTGTTCCTGAGGTGGTCAATTCTATATTTGAAGTTGATAAGAAGGAAATAGCAGCACCTAAGATTCTTGTAGAAGATTTATTGAAGAAGGGTCATGTGACTTATTCTGCTTACGAGCTTCTATATGAGGGAATTAGAGATAAAAAGTTGGTCAAGAAAACAAAAAAAGGTTCCCCACCACTTGCTGCAACTTCACAACAAACTTTGAAGGTTCGAGAACATGGTGTCTGTGATTTAATCATGTTTCTGGTCAGGAGAAGTGCAGGAGGATCCAAGGACAAGCTTATAGAAGTTATTGTGTATTGTGATCATAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 bHLH-MYC_N

Protein Analysis

811

Amino Acids

91.11

Weight (kDa)

7.93

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	83 - 120	6e-07	PPR repeat family
PPR_2	PF13041	109 - 158	5.5e-11	PPR repeat family
PPR_2	PF13041	153 - 191	8.2e-07	PPR repeat family
PPR_3	PF13812	203 - 259	1.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	214 - 263	1.4e-13	PPR repeat family
PPR_1	PF12854	245 - 275	5.7e-08	PPR repeat
PPR_3	PF13812	274 - 331	2.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	281 - 313	2.4e-11	PPR repeat
PPR_2	PF13041	284 - 333	3.6e-18	PPR repeat family
PPR	PF01535	287 - 317	1.5e-07	PPR repeat
PPR_1	PF12854	315 - 342	8.3e-09	PPR repeat
PPR_2	PF13041	319 - 366	1.3e-13	PPR repeat family
PPR	PF01535	322 - 351	5.1e-06	PPR repeat
PPR_1	PF12854	350 - 381	3.2e-06	PPR repeat
PPR_long	PF17177	368 - 503	6.2e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	378 - 434	2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	390 - 438	9e-15	PPR repeat family
PPR_1	PF12854	420 - 451	1.1e-10	PPR repeat
PPR_3	PF13812	447 - 504	1.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	455 - 487	9.2e-10	PPR repeat
PPR_2	PF13041	459 - 508	3.4e-17	PPR repeat family
TPR_24	PF23276	463 - 556	1.1e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	490 - 538	1.6e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	491 - 509	2.3e-06	PPR repeat
PPR_2	PF13041	494 - 543	2.8e-15	PPR repeat family
PPR_long	PF17177	499 - 610	9.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	525 - 557	1e-09	PPR repeat
PPR_2	PF13041	529 - 577	2.2e-13	PPR repeat family
PPR_3	PF13812	553 - 612	1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	560 - 593	7.2e-12	PPR repeat
PPR_2	PF13041	564 - 613	1.7e-14	PPR repeat family
PPR	PF01535	567 - 594	4.4e-06	PPR repeat
PPR_1	PF12854	598 - 628	3.5e-06	PPR repeat
PPR_2	PF13041	600 - 651	6e-13	PPR repeat family
PPR_1	PF12854	635 - 656	2.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74580 AT1G74580 AT1G74580
fragaria_vesca	FvH4_5g15040
malus_domestica	MD06G1192500.v1.1
prunus_persica	Prupe.5G192300_v2.0.a1 Prupe.5G192300_v2.0.a1 Prupe.5G192300_v2.0.a1 Prupe.5G192300_v2.0.a1
pyrus_communis	pycom06g17060
rosa_chinensis	RchiOBHm_Chr7g0181161
rosa_laevigata	RLG00000005208
rosa_multiflora	Rmu_sc0001147.1_g000017 Rmu_sc0027076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272220
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0438800 Rorug06G0438800 Rorug06G0438900 Rorug06G0439000 Rorug06G0439100 Rorug06G0439200 Rorug06G0439300 Rorug06G0439400
rosa_samantha	Rh7AG040900 Rh7BG040300 Rh7CG042300 Rh7DG040700
rosa_wichuraiana	Rw7G003380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	315, 1298
Acc16I	TGCGCA	1 cut(s)	2105
AccB7I	CCANNNNNTGG	2 cut(s)	1278, 2098
AccI	GTMKAC	3 cut(s)	440, 481, 1339
AciI	CCGC	2 cut(s)	914, 1860
AclWI	GGATC	5 cut(s)	50, 63, 802, 2376, 2389
AcsI	RAATTY	2 cut(s)	146, 748
AcyI	GRCGYC	1 cut(s)	1038
AfaI	GTAC	6 cut(s)	236, 556, 1059, 1757, 1858, 1976
AfiI	CCNNNNNNNGG	5 cut(s)	524, 595, 687, 1278, 2098
AhlI	ACTAGT	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	1101
AjuI	GAANNNNNNNTTGG	4 cut(s)	606, 638, 1235, 1267
Alw21I	GWGCWC	1 cut(s)	1553
Alw26I	GTCTC	2 cut(s)	747, 1520
Alw44I	GTGCAC	1 cut(s)	1549
AlwI	GGATC	5 cut(s)	50, 63, 802, 2376, 2389
AoxI	GGCC	1 cut(s)	1647
ApaLI	GTGCAC	1 cut(s)	1549
ApeKI	GCWGC	4 cut(s)	491, 1731, 2165, 2297
ApoI	RAATTY	2 cut(s)	146, 748
Asp700I	GAANNNNTTC	2 cut(s)	711, 2006
AspLEI	GCGC	1 cut(s)	2106
AsuHPI	GGTGA	6 cut(s)	100, 290, 853, 949, 1788, 2035
AsuII	TTCGAA	1 cut(s)	1768
AxyI	CCTNAGG	1 cut(s)	2121
BaeGI	GKGCMC	2 cut(s)	641, 1553
BamHI	GGATCC	2 cut(s)	55, 2381
Bbv12I	GWGCWC	1 cut(s)	1553
BbvI	GCAGC	4 cut(s)	478, 1743, 2177, 2284
BceAI	ACGGC	2 cut(s)	310, 1906
BciT130I	CCWGG	1 cut(s)	1103
BclI	TGATCA	4 cut(s)	1488, 1716, 1824, 2419
BcoDI	GTCTC	2 cut(s)	747, 1520
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	3 cut(s)	224, 477, 1847
BfmI	CTRYAG	2 cut(s)	469, 1661
BisI	GCNGC	4 cut(s)	492, 1732, 2166, 2298
BlsI	GCNGC	4 cut(s)	493, 1733, 2167, 2299
Bme1390I	CCNGG	1 cut(s)	1103
BmiI	GGNNCC	4 cut(s)	57, 244, 2284, 2383
BmrFI	CCNGG	1 cut(s)	1103
BmsI	GCATC	2 cut(s)	1321, 1342
BpmI	CTGGAG	3 cut(s)	92, 834, 1674
Bpu10I	CCTNAGC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	1768
BpuEI	CTTGAG	1 cut(s)	471
BsaAI	YACGTR	2 cut(s)	1599, 1923
BsaHI	GRCGYC	1 cut(s)	1038
BsaI	GGTCTC	1 cut(s)	1520
BsaJI	CCNNGG	3 cut(s)	174, 1650, 2385
BsaWI	WCCGGW	1 cut(s)	300
BsaXI	ACNNNNNCTCC	4 cut(s)	1456, 1486, 1562, 1592
Bsc4I	CCNNNNNNNGG	5 cut(s)	524, 595, 687, 1278, 2098
Bse1I	ACTGG	3 cut(s)	75, 366, 1335
Bse21I	CCTNAGG	1 cut(s)	2121
Bse3DI	GCAATG	2 cut(s)	1152, 1741
BseBI	CCWGG	1 cut(s)	1103
BseDI	CCNNGG	3 cut(s)	174, 1650, 2385
BseGI	GGATG	7 cut(s)	207, 309, 697, 1111, 1546, 1753, 2088
BseLI	CCNNNNNNNGG	5 cut(s)	524, 595, 687, 1278, 2098
BseMI	GCAATG	2 cut(s)	1152, 1741
BseMII	CTCAG	3 cut(s)	183, 1045, 2112
BseNI	ACTGG	3 cut(s)	75, 366, 1335
BseSI	GKGCMC	2 cut(s)	641, 1553
BseXI	GCAGC	4 cut(s)	478, 1743, 2177, 2284
BsgI	GTGCAG	2 cut(s)	1750, 2394
BshFI	GGCC	1 cut(s)	1649
BsiHKAI	GWGCWC	1 cut(s)	1553
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	1254
BslI	CCNNNNNNNGG	5 cut(s)	524, 595, 687, 1278, 2098
BsmAI	GTCTC	2 cut(s)	747, 1520
BsmFI	GGGAC	1 cut(s)	1254
BsnI	GGCC	1 cut(s)	1649
Bso31I	GGTCTC	1 cut(s)	1520
Bsp119I	TTCGAA	1 cut(s)	1768
Bsp1286I	GDGCHC	2 cut(s)	641, 1553
Bsp1407I	TGTACA	2 cut(s)	234, 554
Bsp143I	GATC	8 cut(s)	55, 794, 876, 1488, 1716, 1824, 2381, 2419
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	2 cut(s)	914, 1860
BspANI	GGCC	1 cut(s)	1649
BspCNI	CTCAG	3 cut(s)	184, 1044, 2113
BspHI	TCATGA	3 cut(s)	351, 1821, 1932
BspLI	GGNNCC	4 cut(s)	57, 244, 2284, 2383
BspPI	GGATC	5 cut(s)	50, 63, 802, 2376, 2389
BspT104I	TTCGAA	1 cut(s)	1768
BspTNI	GGTCTC	1 cut(s)	1520
BsrDI	GCAATG	2 cut(s)	1152, 1741
BsrGI	TGTACA	2 cut(s)	234, 554
BsrI	ACTGG	3 cut(s)	75, 366, 1335
BssECI	CCNNGG	3 cut(s)	174, 1650, 2385
BssMI	GATC	8 cut(s)	55, 794, 876, 1488, 1716, 1824, 2381, 2419
BssNAI	GTATAC	1 cut(s)	441
BssNI	GRCGYC	1 cut(s)	1038
BssT1I	CCWWGG	3 cut(s)	174, 1650, 2385
Bst1107I	GTATAC	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	1103
Bst4CI	ACNGT	9 cut(s)	559, 977, 1121, 1415, 1422, 1504, 1898, 1904, 1916
Bst6I	CTCTTC	2 cut(s)	725, 2029
BstACI	GRCGYC	1 cut(s)	1038
BstAPI	GCANNNNNTGC	1 cut(s)	1121
BstAUI	TGTACA	2 cut(s)	234, 554
BstBAI	YACGTR	2 cut(s)	1599, 1923
BstBI	TTCGAA	1 cut(s)	1768
BstC8I	GCNNGC	2 cut(s)	189, 1227
BstDEI	CTNAG	6 cut(s)	21, 192, 1031, 1291, 2121, 2172
BstDSI	CCRYGG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	1367
BstF5I	GGATG	7 cut(s)	207, 309, 697, 1111, 1546, 1753, 2088
BstHHI	GCGC	1 cut(s)	2106
BstKTI	GATC	8 cut(s)	58, 797, 879, 1491, 1719, 1827, 2384, 2422
BstMAI	GTCTC	2 cut(s)	747, 1520
BstMBI	GATC	8 cut(s)	55, 794, 876, 1488, 1716, 1824, 2381, 2419
BstMWI	GCNNNNNNNGC	3 cut(s)	1002, 1121, 1222
BstNI	CCWGG	1 cut(s)	1103
BstNSI	RCATGY	6 cut(s)	29, 185, 517, 603, 1462, 1660
BstPI	GGTNACC	1 cut(s)	1367
BstSCI	CCNGG	1 cut(s)	1101
BstSFI	CTRYAG	2 cut(s)	469, 1661
BstSLI	GKGCMC	2 cut(s)	641, 1553
BstSNI	TACGTA	1 cut(s)	1599
BstV1I	GCAGC	4 cut(s)	478, 1743, 2177, 2284
BstX2I	RGATCY	3 cut(s)	55, 794, 2381
BstYI	RGATCY	3 cut(s)	55, 794, 2381
BstZ17I	GTATAC	1 cut(s)	441
Bsu36I	CCTNAGG	1 cut(s)	2121
BsuRI	GGCC	1 cut(s)	1649
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	1577
BtsCI	GGATG	7 cut(s)	207, 309, 697, 1111, 1546, 1753, 2088
BtsIMutI	CAGTG	6 cut(s)	68, 571, 1039, 1726, 1909, 1962
Cac8I	GCNNGC	2 cut(s)	189, 1227
CciI	TCATGA	3 cut(s)	351, 1821, 1932
CfoI	GCGC	1 cut(s)	2106
CseI	GACGC	2 cut(s)	1046, 1121
Csp6I	GTAC	6 cut(s)	235, 555, 1058, 1756, 1857, 1975
CviQI	GTAC	6 cut(s)	235, 555, 1058, 1756, 1857, 1975
DdeI	CTNAG	6 cut(s)	21, 192, 1031, 1291, 2121, 2172
DpnI	GATC	8 cut(s)	57, 796, 878, 1490, 1718, 1826, 2383, 2421
DpnII	GATC	8 cut(s)	55, 794, 876, 1488, 1716, 1824, 2381, 2419
DraI	TTTAAA	1 cut(s)	1161
Eam1104I	CTCTTC	2 cut(s)	725, 2029
EarI	CTCTTC	2 cut(s)	725, 2029
Eco105I	TACGTA	1 cut(s)	1599
Eco130I	CCWWGG	3 cut(s)	174, 1650, 2385
Eco147I	AGGCCT	1 cut(s)	1649
Eco31I	GGTCTC	1 cut(s)	1520
Eco81I	CCTNAGG	1 cut(s)	2121
Eco91I	GGTNACC	1 cut(s)	1367
EcoO65I	GGTNACC	1 cut(s)	1367
EcoRII	CCWGG	1 cut(s)	1101
EcoT14I	CCWWGG	3 cut(s)	174, 1650, 2385
ErhI	CCWWGG	3 cut(s)	174, 1650, 2385
FalI	AAGNNNNNCTT	4 cut(s)	606, 638, 1356, 1388
FaqI	GGGAC	1 cut(s)	1254
FbaI	TGATCA	4 cut(s)	1488, 1716, 1824, 2419
FblI	GTMKAC	3 cut(s)	440, 481, 1339
Fnu4HI	GCNGC	4 cut(s)	492, 1732, 2166, 2298
FokI	GGATG	7 cut(s)	214, 316, 704, 1118, 1553, 1760, 2075
Fsp4HI	GCNGC	4 cut(s)	492, 1732, 2166, 2298
FspBI	CTAG	3 cut(s)	224, 477, 1847
FspI	TGCGCA	1 cut(s)	2105
GlaI	GCGC	1 cut(s)	2105
GluI	GCNGC	4 cut(s)	492, 1732, 2166, 2298
GsuI	CTGGAG	3 cut(s)	92, 834, 1674
HaeIII	GGCC	1 cut(s)	1649
HapII	CCGG	1 cut(s)	301
HgaI	GACGC	2 cut(s)	1046, 1121
HhaI	GCGC	1 cut(s)	2106
Hin1I	GRCGYC	1 cut(s)	1038
Hin6I	GCGC	1 cut(s)	2104
HinP1I	GCGC	1 cut(s)	2104
HincII	GTYRAC	2 cut(s)	123, 482
HindII	GTYRAC	2 cut(s)	123, 482
HindIII	AAGCTT	4 cut(s)	662, 710, 1163, 2393
HinfI	GANTC	7 cut(s)	4, 917, 1027, 1426, 1465, 1687, 2176
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	6 cut(s)	100, 290, 853, 949, 1788, 2035
Hpy188I	TCNGA	5 cut(s)	815, 1207, 1330, 1431, 1635
Hpy99I	CGWCG	1 cut(s)	1115
HpyCH4III	ACNGT	9 cut(s)	559, 977, 1121, 1415, 1422, 1504, 1898, 1904, 1916
HpyCH4IV	ACGT	3 cut(s)	1388, 1598, 1922
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1002, 1121, 1222
HpyF3I	CTNAG	6 cut(s)	21, 192, 1031, 1291, 2121, 2172
HpySE526I	ACGT	3 cut(s)	1388, 1598, 1922
Hsp92I	GRCGYC	1 cut(s)	1038
HspAI	GCGC	1 cut(s)	2104
Ksp22I	TGATCA	4 cut(s)	1488, 1716, 1824, 2419
Kzo9I	GATC	8 cut(s)	55, 794, 876, 1488, 1716, 1824, 2381, 2419
LmnI	GCTCC	3 cut(s)	178, 242, 1751
Lsp1109I	GCAGC	4 cut(s)	478, 1743, 2177, 2284
LweI	GCATC	2 cut(s)	1321, 1342
MaeI	CTAG	3 cut(s)	224, 477, 1847
MaeII	ACGT	3 cut(s)	1388, 1598, 1922
MalI	GATC	8 cut(s)	57, 796, 878, 1490, 1718, 1826, 2383, 2421
MboI	GATC	8 cut(s)	55, 794, 876, 1488, 1716, 1824, 2381, 2419
MboII	GAAGA	8 cut(s)	103, 110, 290, 742, 1782, 2046, 2198, 2209
MflI	RGATCY	3 cut(s)	55, 794, 2381
MhlI	GDGCHC	2 cut(s)	641, 1553
MlyI	GAGTC	4 cut(s)	13, 926, 1474, 1681
MmeI	TCCRAC	1 cut(s)	1233
MroXI	GAANNNNTTC	2 cut(s)	711, 2006
MslI	CAYNNNNRTG	1 cut(s)	1130
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	1103
MvaI	CCWGG	1 cut(s)	1103
MwoI	GCNNNNNNNGC	3 cut(s)	1002, 1121, 1222
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	8 cut(s)	55, 794, 876, 1488, 1716, 1824, 2381, 2419
NlaIV	GGNNCC	4 cut(s)	57, 244, 2284, 2383
NmuCI	GTSAC	5 cut(s)	859, 1034, 1886, 2023, 2209
NsbI	TGCGCA	1 cut(s)	2105
NspI	RCATGY	6 cut(s)	29, 185, 517, 603, 1462, 1660
NspV	TTCGAA	1 cut(s)	1768
PagI	TCATGA	3 cut(s)	351, 1821, 1932
PceI	AGGCCT	1 cut(s)	1649
PdmI	GAANNNNTTC	2 cut(s)	711, 2006
PfeI	GAWTC	3 cut(s)	1027, 1426, 2176
PflMI	CCANNNNNTGG	2 cut(s)	1278, 2098
PfoI	TCCNGGA	1 cut(s)	1101
PkrI	GCNGC	4 cut(s)	493, 1733, 2167, 2299
PleI	GAGTC	4 cut(s)	12, 925, 1473, 1681
PpsI	GAGTC	4 cut(s)	12, 925, 1473, 1681
Ppu21I	YACGTR	2 cut(s)	1599, 1923
PsiI	TTATAA	2 cut(s)	315, 1298
Psp6I	CCWGG	1 cut(s)	1101
PspEI	GGTNACC	1 cut(s)	1367
PspGI	CCWGG	1 cut(s)	1101
PspN4I	GGNNCC	4 cut(s)	57, 244, 2284, 2383
PsuI	RGATCY	3 cut(s)	55, 794, 2381
RsaI	GTAC	6 cut(s)	236, 556, 1059, 1757, 1858, 1976
RsaNI	GTAC	6 cut(s)	235, 555, 1058, 1756, 1857, 1975
RseI	CAYNNNNRTG	1 cut(s)	1130
SalI	GTCGAC	1 cut(s)	480
SatI	GCNGC	4 cut(s)	492, 1732, 2166, 2298
Sau3AI	GATC	8 cut(s)	55, 794, 876, 1488, 1716, 1824, 2381, 2419
SchI	GAGTC	4 cut(s)	13, 926, 1474, 1681
ScrFI	CCNGG	1 cut(s)	1103
SduI	GDGCHC	2 cut(s)	641, 1553
SfaNI	GCATC	2 cut(s)	1321, 1342
SfcI	CTRYAG	2 cut(s)	469, 1661
SfuI	TTCGAA	1 cut(s)	1768
SmiMI	CAYNNNNRTG	1 cut(s)	1130
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
SnaBI	TACGTA	1 cut(s)	1599
SpeI	ACTAGT	1 cut(s)	476
SseBI	AGGCCT	1 cut(s)	1649
SsiI	CCGC	2 cut(s)	914, 1860
SspI	AATATT	3 cut(s)	208, 766, 1171
SspMI	CTAG	3 cut(s)	224, 477, 1847
StuI	AGGCCT	1 cut(s)	1649
StyD4I	CCNGG	1 cut(s)	1101
StyI	CCWWGG	3 cut(s)	174, 1650, 2385
TaaI	ACNGT	9 cut(s)	559, 977, 1121, 1415, 1422, 1504, 1898, 1904, 1916
TaiI	ACGT	3 cut(s)	1391, 1601, 1925
TaqI	TCGA	3 cut(s)	481, 1768, 2326
TatI	WGTACW	2 cut(s)	234, 554
TfiI	GAWTC	3 cut(s)	1027, 1426, 2176
TscAI	CASTG	6 cut(s)	75, 571, 1039, 1726, 1909, 1969
TseFI	GTSAC	5 cut(s)	859, 1034, 1886, 2023, 2209
TseI	GCWGC	4 cut(s)	491, 1731, 2165, 2297
Tsp45I	GTSAC	5 cut(s)	859, 1034, 1886, 2023, 2209
TspRI	CASTG	6 cut(s)	75, 571, 1039, 1726, 1909, 1969
Van91I	CCANNNNNTGG	2 cut(s)	1278, 2098
VneI	GTGCAC	1 cut(s)	1549
XapI	RAATTY	2 cut(s)	146, 748
XceI	RCATGY	6 cut(s)	29, 185, 517, 603, 1462, 1660
XmiI	GTMKAC	3 cut(s)	440, 481, 1339
XmnI	GAANNNNTTC	2 cut(s)	711, 2006
XspI	CTAG	3 cut(s)	224, 477, 1847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.