Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004351

Physical Location & Seq

Genomic Coordinates Reverse (-)

57284927 .. 57288137

Gene Structure 3211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0439400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1674 bp

ATGGCACCTCCGTCTCCGGCCGCCGCCGTCGATCCCAGAAGCGGCTTCTGCAAATCCAACTCCATCTTCTACAGCAAGCGCAAACCAATCCCTCTCTCACCCAACGACTCCCTCGACGTCACCACATTCATTTCCTCTCAGGCTCACCGCGGCCGCATCGCCTTCATCGACGCCGCCACCGGCCGCCACCTCACCTACTCCCAACTCTGGCGAGCAGTCTACTCCGTCGCCTCCTCTCTCTCCGACATGGGCATCCGAAAAGGCCACGTCATCCTCCTTCTCTCCCCCAACTCTATCTTCTTCCCCGTCGTCTGCCTCGCCGTCATGTCCATCGGCGCCATCATAACCACCACCAACCCTCTCAACACCACCCGCGAGATCACTAAACAGGTCGCGGATTCGAAACCCGTCCTCGCCTTCACAACTCGGGAGCTACTCCCCAAGCTCGCCGGGTTCGCTTCCAATAACATAGTCTTGATGGACGGTGCTGATCAAGCTGCTAAGACTAAGAGCAGTAAAAAAGTGCTGACGCTGGCGGCGATGATGAACAGGCCGCCCACCGGAGGCCGGTACAGGGAGACAGTGAACCAAAACGACACGGCGACTCTGCTTTATTCTTCGGGAACGACAGGAGCCAGCAAAGGCGTGGTGTCGTCTCACCGGAACCTGATCGCGACGGTCGTGACCGTCCTGGGGAGATTCGCCGCGCAAGTACAGGAGGAGGAGCAAACGTTCCTCTGCACCGTTCCGATGTTCCACATATACGGCCTGGCGACGTTCGCCACCGGTTTCCTGACGTCAGGATCCACCATCGTCATTCTCTCCAAGTTCGATATGCACGACATGCTTGCGGCGATAGGGAAATACAAAGTTACTTACTTGCCCCTGGTGCCGCCGATTTTGGTGGCGCTGGTTAACGGCGCGGATCAGATAAAGGCCAAGTACGATCTGAGCTCGCTGCACTCGGTTCTGTCTGGTGGGGCCCCCTTGGGCAAGGAAATGATTGAGGGGTTCGTGGAGAAGTTTCCTGCGGTCAGCATTCTACAGGGCTACGGCTTGACCGAGTCAACGGGGCTGGGAGCCTCGACGGACACGTTGGAGGAGAGCCGGAGGTACGGCACGGCGGGGATGCTGTCGCCGAGCATGGAGGCCAAGATTGTGGACCCCGACAGCGGCGAGGCTTTAACGGTCAATAAGACTGGTGAGCTTTGGCTCAAGGGTCCCACCATCATGAAAGGATACTTCTGCAACGATGATGCCACTGCATCGACGCTTGATACGGAAGGATGGTTAAGGACCGGAGATCTTTGTTACATTGATGATGATGGATTCATCTTTGTGGTTGATAGGTTGAAGGAGCTTATTAAATACAAGGCATTTCAGGTGCCCCCAGCGGAATTGGAGGCTTTGTTACTCACTCATCCCCAAATTGCTGATGCGGCTGTTATACCATTTCCTGATGAAAAGGTGGGGCAGTTTCCGATGGCATATGTGGTAAGAAAAGCCGGAAGCAATTTATCAGAGATGGCTGTCATGGACTTCATAGCGAAACAGGTGGCTCCGTACAAGAGGATTAGGAAAGTGGCGTTTATAGCTTCGGTACCGAAGAATCCATCTGGCAAGATTCTCAGGAAGGATCTTATTCAGCTTGCAACTTCTTCTTCTAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 bHLH-MYC_N

Protein Analysis

557

Amino Acids

60.05

Weight (kDa)

8.99

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	47 - 415	3.9e-89	AMP-binding enzyme
AMP-binding_C	PF13193	466 - 541	5.8e-18	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74580 AT1G74580 AT1G74580
fragaria_vesca	FvH4_5g15040
malus_domestica	MD06G1192500.v1.1
prunus_persica	Prupe.5G192300_v2.0.a1 Prupe.5G192300_v2.0.a1 Prupe.5G192300_v2.0.a1 Prupe.5G192300_v2.0.a1
pyrus_communis	pycom06g17060
rosa_chinensis	RchiOBHm_Chr7g0181161
rosa_laevigata	RLG00000005208
rosa_multiflora	Rmu_sc0001147.1_g000017 Rmu_sc0027076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272220
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0438800 Rorug06G0438800 Rorug06G0438900 Rorug06G0439000 Rorug06G0439100 Rorug06G0439200 Rorug06G0439300 Rorug06G0439400
rosa_samantha	Rh7AG040900 Rh7BG040300 Rh7CG042300 Rh7DG040700
rosa_wichuraiana	Rw7G003380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	120, 800
Acc65I	GGTACC	1 cut(s)	1600
AccB1I	GGYRCC	5 cut(s)	4, 335, 889, 1384, 1600
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	6 cut(s)	150, 375, 395, 674, 707, 923
AclI	AACGTT	1 cut(s)	731
AclWI	GGATC	5 cut(s)	26, 798, 811, 933, 1644
AcoI	YGGCCR	3 cut(s)	18, 151, 181
AcyI	GRCGYC	4 cut(s)	117, 171, 336, 797
AfaI	GTAC	6 cut(s)	572, 714, 944, 1115, 1565, 1602
AfiI	CCNNNNNNNGG	8 cut(s)	41, 207, 560, 563, 567, 574, 693, 1172
AflIII	ACRYGT	1 cut(s)	1092
AgeI	ACCGGT	1 cut(s)	785
AgsI	TTSAA	1 cut(s)	1354
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	3 cut(s)	690, 768, 885
AjuI	GAANNNNNNNTTGG	4 cut(s)	50, 82, 281, 313
AloI	GAACNNNNNNTCC	2 cut(s)	716, 748
AluBI	AGCT	8 cut(s)	433, 445, 497, 954, 1207, 1360, 1595, 1648
AluI	AGCT	8 cut(s)	433, 445, 497, 954, 1207, 1360, 1595, 1648
Alw21I	GWGCWC	1 cut(s)	956
Alw26I	GTCTC	3 cut(s)	18, 572, 660
AlwI	GGATC	5 cut(s)	26, 798, 811, 933, 1644
Ama87I	CYCGRG	1 cut(s)	426
ApaI	GGGCCC	1 cut(s)	985
ApeKI	GCWGC	2 cut(s)	497, 958
AsiGI	ACCGGT	1 cut(s)	785
Asp718I	GGTACC	1 cut(s)	1600
AspLEI	GCGC	5 cut(s)	81, 338, 709, 910, 923
AspS9I	GGNCC	5 cut(s)	981, 982, 1162, 1220, 1296
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	6 cut(s)	90, 112, 137, 184, 650, 1214
AsuII	TTCGAA	1 cut(s)	401
AvaI	CYCGRG	1 cut(s)	426
AvaII	GGWCC	3 cut(s)	1162, 1220, 1296
BaeGI	GKGCMC	2 cut(s)	985, 1389
BamHI	GGATCC	1 cut(s)	803
BanI	GGYRCC	5 cut(s)	4, 335, 889, 1384, 1600
BanII	GRGCYC	2 cut(s)	956, 985
Bbv12I	GWGCWC	1 cut(s)	956
BbvI	GCAGC	2 cut(s)	484, 945
BceAI	ACGGC	8 cut(s)	11, 305, 615, 781, 934, 1069, 1132, 1137
BcgI	CGANNNNNNTGC	2 cut(s)	830, 864
BciT130I	CCWGG	3 cut(s)	692, 770, 887
BciVI	GTATCC	1 cut(s)	1232
BclI	TGATCA	1 cut(s)	490
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	3 cut(s)	18, 572, 660
BfmI	CTRYAG	2 cut(s)	70, 1043
BfoI	RGCGCY	2 cut(s)	339, 911
BfuI	GTATCC	1 cut(s)	1232
BglII	AGATCT	1 cut(s)	1303
Bme1390I	CCNGG	4 cut(s)	451, 692, 770, 887
Bme18I	GGWCC	3 cut(s)	1162, 1220, 1296
BmeT110I	CYCGRG	1 cut(s)	426
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	5 cut(s)	981, 982, 1162, 1220, 1296
BmrFI	CCNGG	4 cut(s)	451, 692, 770, 887
BmsI	GCATC	6 cut(s)	165, 261, 1119, 1246, 1274, 1426
Bpu14I	TTCGAA	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	1199
BpuMI	CCSGG	1 cut(s)	451
BsaHI	GRCGYC	4 cut(s)	117, 171, 336, 797
BsaJI	CCNNGG	4 cut(s)	148, 691, 885, 987
BsaWI	WCCGGW	4 cut(s)	560, 660, 785, 1298
BsaXI	ACNNNNNCTCC	4 cut(s)	716, 746, 1394, 1424
Bsc4I	CCNNNNNNNGG	8 cut(s)	41, 207, 560, 563, 567, 574, 693, 1172
Bse118I	RCCGGY	3 cut(s)	179, 567, 785
Bse1I	ACTGG	1 cut(s)	1204
BseBI	CCWGG	3 cut(s)	692, 770, 887
BseDI	CCNNGG	4 cut(s)	148, 691, 885, 987
BseGI	GGATG	5 cut(s)	252, 270, 1134, 1292, 1420
BseLI	CCNNNNNNNGG	8 cut(s)	41, 207, 560, 563, 567, 574, 693, 1172
BseMII	CTCAG	3 cut(s)	152, 941, 1642
BseNI	ACTGG	1 cut(s)	1204
BseRI	GAGGAG	4 cut(s)	223, 734, 737, 1115
BseSI	GKGCMC	2 cut(s)	985, 1389
BseX3I	CGGCCG	3 cut(s)	18, 151, 181
BseXI	GCAGC	2 cut(s)	484, 945
BseYI	CCCAGC	2 cut(s)	1075, 1390
BsgI	GTGCAG	2 cut(s)	724, 944
Bsh1236I	CGCG	6 cut(s)	150, 375, 395, 674, 707, 923
Bsh1285I	CGRYCG	4 cut(s)	21, 154, 184, 681
BshNI	GGYRCC	5 cut(s)	4, 335, 889, 1384, 1600
BshTI	ACCGGT	1 cut(s)	785
BsiEI	CGRYCG	4 cut(s)	21, 154, 184, 681
BsiHKAI	GWGCWC	1 cut(s)	956
BsiHKCI	CYCGRG	1 cut(s)	426
BslFI	GGGAC	1 cut(s)	1206
BslI	CCNNNNNNNGG	8 cut(s)	41, 207, 560, 563, 567, 574, 693, 1172
BsmAI	GTCTC	3 cut(s)	18, 572, 660
BsmBI	CGTCTC	2 cut(s)	18, 660
BsmFI	GGGAC	1 cut(s)	1206
BsmI	GAATGC	1 cut(s)	1038
BsoBI	CYCGRG	1 cut(s)	426
Bsp119I	TTCGAA	1 cut(s)	401
Bsp120I	GGGCCC	1 cut(s)	981
Bsp1286I	GDGCHC	3 cut(s)	956, 985, 1389
Bsp143I	GATC	9 cut(s)	31, 378, 490, 669, 803, 925, 946, 1303, 1636
Bsp68I	TCGCGA	1 cut(s)	674
BspCNI	CTCAG	3 cut(s)	151, 942, 1641
BspFNI	CGCG	6 cut(s)	150, 375, 395, 674, 707, 923
BspHI	TCATGA	1 cut(s)	1230
BspPI	GGATC	5 cut(s)	26, 798, 811, 933, 1644
BspT104I	TTCGAA	1 cut(s)	401
BspT107I	GGYRCC	5 cut(s)	4, 335, 889, 1384, 1600
BsrFI	RCCGGY	3 cut(s)	179, 567, 785
BsrI	ACTGG	1 cut(s)	1204
BssAI	RCCGGY	3 cut(s)	179, 567, 785
BssECI	CCNNGG	4 cut(s)	148, 691, 885, 987
BssMI	GATC	9 cut(s)	31, 378, 490, 669, 803, 925, 946, 1303, 1636
BssNI	GRCGYC	4 cut(s)	117, 171, 336, 797
BssT1I	CCWWGG	1 cut(s)	987
Bst2UI	CCWGG	3 cut(s)	692, 770, 887
Bst4CI	ACNGT	6 cut(s)	485, 583, 679, 688, 745, 1189
BstACI	GRCGYC	4 cut(s)	117, 171, 336, 797
BstAPI	GCANNNNNTGC	1 cut(s)	844
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	8 cut(s)	77, 213, 447, 534, 637, 849, 956, 1650
BstDEI	CTNAG	5 cut(s)	138, 501, 507, 950, 1628
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	5 cut(s)	252, 270, 1134, 1292, 1420
BstFNI	CGCG	6 cut(s)	150, 375, 395, 674, 707, 923
BstH2I	RGCGCY	2 cut(s)	339, 911
BstHHI	GCGC	5 cut(s)	81, 338, 709, 910, 923
BstKTI	GATC	9 cut(s)	34, 381, 493, 672, 806, 928, 949, 1306, 1639
BstMAI	GTCTC	3 cut(s)	18, 572, 660
BstMBI	GATC	9 cut(s)	31, 378, 490, 669, 803, 925, 946, 1303, 1636
BstMCI	CGRYCG	4 cut(s)	21, 154, 184, 681
BstMWI	GCNNNNNNNGC	8 cut(s)	48, 455, 494, 779, 844, 889, 1439, 1592
BstNI	CCWGG	3 cut(s)	692, 770, 887
BstNSI	RCATGY	1 cut(s)	847
BstSCI	CCNGG	4 cut(s)	449, 690, 768, 885
BstSFI	CTRYAG	2 cut(s)	70, 1043
BstSLI	GKGCMC	2 cut(s)	985, 1389
BstUI	CGCG	6 cut(s)	150, 375, 395, 674, 707, 923
BstV1I	GCAGC	2 cut(s)	484, 945
BstX2I	RGATCY	3 cut(s)	803, 1303, 1636
BstXI	CCANNNNNNTGG	1 cut(s)	1159
BstYI	RGATCY	3 cut(s)	803, 1303, 1636
BstZI	CGGCCG	3 cut(s)	18, 151, 181
BsuI	GTATCC	1 cut(s)	1232
BtgI	CCRYGG	1 cut(s)	148
BtgZI	GCGATG	2 cut(s)	142, 554
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	5 cut(s)	252, 270, 1134, 1292, 1420
BtsI	GCAGTG	1 cut(s)	1260
BtsIMutI	CAGTG	2 cut(s)	588, 1260
BtuMI	TCGCGA	1 cut(s)	674
Cac8I	GCNNGC	8 cut(s)	77, 213, 447, 534, 637, 849, 956, 1650
CciI	TCATGA	1 cut(s)	1230
CciNI	GCGGCCGC	1 cut(s)	151
CfoI	GCGC	5 cut(s)	81, 338, 709, 910, 923
Cfr10I	RCCGGY	3 cut(s)	179, 567, 785
Cfr13I	GGNCC	5 cut(s)	981, 982, 1162, 1220, 1296
Cfr42I	CCGCGG	1 cut(s)	151
CseI	GACGC	3 cut(s)	179, 538, 1279
Csp6I	GTAC	6 cut(s)	571, 713, 943, 1114, 1564, 1601
CspAI	ACCGGT	1 cut(s)	785
CviAII	CATG	6 cut(s)	247, 325, 844, 1144, 1231, 1534
CviQI	GTAC	6 cut(s)	571, 713, 943, 1114, 1564, 1601
DdeI	CTNAG	5 cut(s)	138, 501, 507, 950, 1628
DinI	GGCGCC	1 cut(s)	337
DpnI	GATC	9 cut(s)	33, 380, 492, 671, 805, 927, 948, 1305, 1638
DpnII	GATC	9 cut(s)	31, 378, 490, 669, 803, 925, 946, 1303, 1636
EaeI	YGGCCR	3 cut(s)	18, 151, 181
EagI	CGGCCG	3 cut(s)	18, 151, 181
Ecl136II	GAGCTC	1 cut(s)	954
EclXI	CGGCCG	3 cut(s)	18, 151, 181
Eco130I	CCWWGG	1 cut(s)	987
Eco24I	GRGCYC	2 cut(s)	956, 985
Eco47I	GGWCC	3 cut(s)	1162, 1220, 1296
Eco52I	CGGCCG	3 cut(s)	18, 151, 181
Eco53kI	GAGCTC	1 cut(s)	954
Eco88I	CYCGRG	1 cut(s)	426
EcoICRI	GAGCTC	1 cut(s)	954
EcoO109I	RGGNCCY	3 cut(s)	981, 982, 1220
EcoRII	CCWGG	3 cut(s)	690, 768, 885
EcoT14I	CCWWGG	1 cut(s)	987
EcoT38I	GRGCYC	2 cut(s)	956, 985
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	987
Esp3I	CGTCTC	2 cut(s)	18, 660
FaeI	CATG	6 cut(s)	250, 328, 847, 1147, 1234, 1537
FaqI	GGGAC	1 cut(s)	1206
FatI	CATG	6 cut(s)	246, 324, 843, 1143, 1230, 1533
FauI	CCCGC	2 cut(s)	380, 1117
FauNDI	CATATG	1 cut(s)	1489
FbaI	TGATCA	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	219
FokI	GGATG	5 cut(s)	239, 257, 1141, 1299, 1407
FriOI	GRGCYC	2 cut(s)	956, 985
GlaI	GCGC	5 cut(s)	80, 337, 708, 909, 922
GsaI	CCCAGC	2 cut(s)	1079, 1394
HaeII	RGCGCY	2 cut(s)	339, 911
HgaI	GACGC	3 cut(s)	179, 538, 1279
HhaI	GCGC	5 cut(s)	81, 338, 709, 910, 923
Hin1I	GRCGYC	4 cut(s)	117, 171, 336, 797
Hin1II	CATG	6 cut(s)	250, 328, 847, 1147, 1234, 1537
Hin6I	GCGC	5 cut(s)	79, 336, 707, 908, 921
HinP1I	GCGC	5 cut(s)	79, 336, 707, 908, 921
HincII	GTYRAC	2 cut(s)	916, 1068
HindII	GTYRAC	2 cut(s)	916, 1068
HinfI	GANTC	8 cut(s)	107, 398, 604, 699, 1064, 1329, 1609, 1624
HpaI	GTTAAC	1 cut(s)	916
HphI	GGTGA	6 cut(s)	90, 112, 137, 184, 650, 1214
Hpy166II	GTNNAC	5 cut(s)	220, 586, 916, 1068, 1162
Hpy188I	TCNGA	7 cut(s)	244, 257, 750, 930, 951, 1482, 1522
Hpy8I	GTNNAC	5 cut(s)	220, 586, 916, 1068, 1162
Hpy99I	CGWCG	9 cut(s)	32, 119, 173, 230, 311, 679, 778, 1090, 1273
HpyAV	CCTTC	6 cut(s)	172, 287, 427, 1277, 1348, 1627
HpyCH4III	ACNGT	6 cut(s)	485, 583, 679, 688, 745, 1189
HpyCH4IV	ACGT	6 cut(s)	117, 267, 731, 776, 797, 1094
HpyCH4V	TGCA	7 cut(s)	51, 741, 838, 961, 1248, 1265, 1652
HpyF10VI	GCNNNNNNNGC	8 cut(s)	48, 455, 494, 779, 844, 889, 1439, 1592
HpyF3I	CTNAG	5 cut(s)	138, 501, 507, 950, 1628
HpySE526I	ACGT	6 cut(s)	117, 267, 731, 776, 797, 1094
Hsp92I	GRCGYC	4 cut(s)	117, 171, 336, 797
Hsp92II	CATG	6 cut(s)	250, 328, 847, 1147, 1234, 1537
HspAI	GCGC	5 cut(s)	79, 336, 707, 908, 921
KasI	GGCGCC	1 cut(s)	335
KflI	GGGWCCC	1 cut(s)	1220
KpnI	GGTACC	1 cut(s)	1604
Ksp22I	TGATCA	1 cut(s)	490
KspAI	GTTAAC	1 cut(s)	916
KspI	CCGCGG	1 cut(s)	151
Kzo9I	GATC	9 cut(s)	31, 378, 490, 669, 803, 925, 946, 1303, 1636
LmnI	GCTCC	6 cut(s)	430, 632, 724, 1079, 1357, 1564
Lsp1109I	GCAGC	2 cut(s)	484, 945
LweI	GCATC	6 cut(s)	165, 261, 1119, 1246, 1274, 1426
MaeII	ACGT	6 cut(s)	117, 267, 731, 776, 797, 1094
MaeIII	GTNAC	5 cut(s)	118, 682, 871, 1310, 1410
MalI	GATC	9 cut(s)	33, 380, 492, 671, 805, 927, 948, 1305, 1638
MboI	GATC	9 cut(s)	31, 378, 490, 669, 803, 925, 946, 1303, 1636
MboII	GAAGA	7 cut(s)	58, 289, 292, 609, 1618, 1650, 1653
MflI	RGATCY	3 cut(s)	803, 1303, 1636
MhlI	GDGCHC	3 cut(s)	956, 985, 1389
MluCI	AATT	3 cut(s)	1397, 1428, 1513
Mly113I	GGCGCC	1 cut(s)	336
MlyI	GAGTC	3 cut(s)	101, 598, 1073
MmeI	TCCRAC	3 cut(s)	81, 267, 1077
MseI	TTAA	4 cut(s)	915, 1184, 1292, 1365
MslI	CAYNNNNRTG	2 cut(s)	1229, 1337
MspA1I	CMGCKG	3 cut(s)	150, 1173, 1394
MspR9I	CCNGG	4 cut(s)	451, 692, 770, 887
Mva1269I	GAATGC	1 cut(s)	1038
MvaI	CCWGG	3 cut(s)	692, 770, 887
MvnI	CGCG	6 cut(s)	150, 375, 395, 674, 707, 923
MwoI	GCNNNNNNNGC	8 cut(s)	48, 455, 494, 779, 844, 889, 1439, 1592
NarI	GGCGCC	1 cut(s)	336
NciI	CCSGG	1 cut(s)	451
NdeI	CATATG	1 cut(s)	1489
NdeII	GATC	9 cut(s)	31, 378, 490, 669, 803, 925, 946, 1303, 1636
NlaIII	CATG	6 cut(s)	250, 328, 847, 1147, 1234, 1537
NmeAIII	GCCGAG	1 cut(s)	1164
NmuCI	GTSAC	2 cut(s)	118, 682
NotI	GCGGCCGC	1 cut(s)	151
NruI	TCGCGA	1 cut(s)	674
NspI	RCATGY	1 cut(s)	847
NspV	TTCGAA	1 cut(s)	401
PagI	TCATGA	1 cut(s)	1230
PcsI	WCGNNNNNNNCGW	7 cut(s)	111, 165, 536, 678, 837, 1059, 1091
PctI	GAATGC	1 cut(s)	1038
PfeI	GAWTC	5 cut(s)	398, 699, 1329, 1609, 1624
PflFI	GACNNNGTC	1 cut(s)	1063
PinAI	ACCGGT	1 cut(s)	785
PleI	GAGTC	3 cut(s)	101, 598, 1072
PluTI	GGCGCC	1 cut(s)	339
PpsI	GAGTC	3 cut(s)	101, 598, 1072
PpuMI	RGGWCCY	1 cut(s)	1220
Psp124BI	GAGCTC	1 cut(s)	956
Psp1406I	AACGTT	1 cut(s)	731
Psp5II	RGGWCCY	1 cut(s)	1220
Psp6I	CCWGG	3 cut(s)	690, 768, 885
PspFI	CCCAGC	2 cut(s)	1075, 1390
PspGI	CCWGG	3 cut(s)	690, 768, 885
PspOMI	GGGCCC	1 cut(s)	981
PspPI	GGNCC	5 cut(s)	981, 982, 1162, 1220, 1296
PspPPI	RGGWCCY	1 cut(s)	1220
PsuI	RGATCY	3 cut(s)	803, 1303, 1636
PsyI	GACNNNGTC	1 cut(s)	1063
RruI	TCGCGA	1 cut(s)	674
RsaI	GTAC	6 cut(s)	572, 714, 944, 1115, 1565, 1602
RsaNI	GTAC	6 cut(s)	571, 713, 943, 1114, 1564, 1601
RseI	CAYNNNNRTG	2 cut(s)	1229, 1337
SacI	GAGCTC	1 cut(s)	956
SacII	CCGCGG	1 cut(s)	151
SaqAI	TTAA	4 cut(s)	915, 1184, 1292, 1365
Sau3AI	GATC	9 cut(s)	31, 378, 490, 669, 803, 925, 946, 1303, 1636
Sau96I	GGNCC	5 cut(s)	981, 982, 1162, 1220, 1296
SchI	GAGTC	3 cut(s)	101, 598, 1073
ScrFI	CCNGG	4 cut(s)	451, 692, 770, 887
SduI	GDGCHC	3 cut(s)	956, 985, 1389
SfaNI	GCATC	6 cut(s)	165, 261, 1119, 1246, 1274, 1426
SfcI	CTRYAG	2 cut(s)	70, 1043
SfoI	GGCGCC	1 cut(s)	337
Sfr303I	CCGCGG	1 cut(s)	151
SfuI	TTCGAA	1 cut(s)	401
SgrBI	CCGCGG	1 cut(s)	151
SinI	GGWCC	3 cut(s)	1162, 1220, 1296
SmiMI	CAYNNNNRTG	2 cut(s)	1229, 1337
SmlI	CTYRAG	1 cut(s)	1214
SmoI	CTYRAG	1 cut(s)	1214
Sse9I	AATT	3 cut(s)	1397, 1428, 1513
SspDI	GGCGCC	1 cut(s)	335
SstI	GAGCTC	1 cut(s)	956
StyD4I	CCNGG	4 cut(s)	449, 690, 768, 885
StyI	CCWWGG	1 cut(s)	987
TaaI	ACNGT	6 cut(s)	485, 583, 679, 688, 745, 1189
TaiI	ACGT	6 cut(s)	120, 270, 734, 779, 800, 1097
TaqI	TCGA	7 cut(s)	30, 114, 168, 401, 831, 1085, 1268
TaqII	GACCGA	1 cut(s)	1076
TasI	AATT	3 cut(s)	1397, 1428, 1513
TatI	WGTACW	1 cut(s)	712
TfiI	GAWTC	5 cut(s)	398, 699, 1329, 1609, 1624
Tru1I	TTAA	4 cut(s)	915, 1184, 1292, 1365
Tru9I	TTAA	4 cut(s)	915, 1184, 1292, 1365
TscAI	CASTG	2 cut(s)	588, 1267
TseFI	GTSAC	2 cut(s)	118, 682
TseI	GCWGC	2 cut(s)	497, 958
Tsp45I	GTSAC	2 cut(s)	118, 682
TspDTI	ATGAA	7 cut(s)	118, 154, 560, 1247, 1321, 1476, 1531
TspGWI	ACGGA	4 cut(s)	214, 1103, 1295, 1551
TspRI	CASTG	2 cut(s)	588, 1267
Tth111I	GACNNNGTC	1 cut(s)	1063
VpaK11BI	GGWCC	3 cut(s)	1162, 1220, 1296
XceI	RCATGY	1 cut(s)	847
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XmiI	GTMKAC	1 cut(s)	219
ZraI	GACGTC	2 cut(s)	118, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.