Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004351

Physical Location & Seq

Genomic Coordinates Reverse (-)

57265379 .. 57267784

Gene Structure 2406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0439000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2406 bp

ATGGAAGCAGCGGACCAACCCCAAAACCCCTCCGATAACCAAAACGACGTCGTCTCCGGCGATTCCTCGCCGGAAACTGACCTCACCCGCTCATCGAGCCCTCAGGAAAACAACCAAAACGATTCACAGAACCAGTCCTCGGAAAACCCGTCGGCACCACCGCAAGCGCCCATTTCGGACTCTCAAGATGACTCCTCCGAACCCATCCCTGAAGACACCCCTAATGAACCGCCTCAAAACCCCGCCGGACCGGGTCCAGCAGAGACCACCAGCCTTCCGGCGAAACGACGCCGTCGCAGGAAGAAGTTTTTCACGGAGCTGATCGGCACTCCGTCGATGGCCAAGAGCCGCCGGACCGACCTCAACAAAGAGGTCGACACCGAAGCCCTGATCGCACTCTCGGTGGGGTTTCCGGTAGACTCGCTCACAGAGGAGGAGATCGAGGCCAACGTGGTCCCCACCATCGGCGGAGTTGAGCAGGCCAACTATATCGTCGTCCGGAACCACATTCTGTCCAGGTGGCGGTCCAATGTTTCGTTCTGGTTGACCAGGGAGCTGGCTCTGGAGTCGATTCGGCTGGAGCATAAAGGATTGGTCGACAAAGCTTACAATTTTCTGGTGGAGCACGGCTACATCAACTTCGGGCTAGCTCCGGCGATTAAAGAAGTGAAATTGAGGTCGTTTGATGGGTCTGAGAGGGGCAATGTGGTAATTGTGGGAGCTGGTTTGGCCGGTTTGGTGGCGGCCAGGCAGTTGGTGTTTTTGGGGTTCAAAGTTGTGGTATTGGAAGGCAGGAGTAGGCCTGGAGGGAGAGTGAAGACGAAGAAAATGAAAGGGGAGGGATTGGAGGCTGCAGCTGATCTCGGTGGGAGTGTCCTCACCGGAATAAATGGGAACCCACTAGGGGTTTTGGCTCGGCAATTGGAGCTGCCTCTTCATAAGGTGAGGGATCTTTGCCCTCTTTATTTACCAGATGGAAAATCTGTGAATTCTGAAATTGATGATAGAATAGAGGCTTCTTTTAATAAGTTGTTAGATAGAGTTTGTAAGCTTAGACATGCAATGATTGAGGAAGTTAAGTCTGTAGATGTTCCGTTAGGGACTGCACTGGAAGCTTTTCGAAGAGTGTGTAATGTGGCTCAGGATCCGCAGGAGAGAATGCTCTTGGATTGGCATCTTGCTAATTTGGAATATGCAAATGCCACCTTGATGTCTAATTTGTCAATGGCGTATTGGGATCAGGATGATCCCTATGAGATGGGTGGTGACCATTGTTTTATTCCCGGAGGCAATGAGACCTTTGTGCGAGCCCTTGCAGAGGGCCTTCCAATTTTCTATGACAGGACTGTGGAAAGTATTAGGTATGGAACTGATGGGGTTTTGGTTTACGCAAATGGCCAGGAGTTTCGAGGGGACATGGTTCTTTGCACTGTGCCATTAGGTGTGCTTAAGAAGGGGTCAATTGAATTTGTCCCAGAGCTTCCACAAAGGAAGAGAGATGCAATTCAGAGTTTGGGATTTGGATTGTTGAATAAGGTTGCCATATTGTTTCCTTATAACTTTTGGGGTGGAGACATTGATACTTTTGGGCATTTGACTGAGGATCCGTGTATGAGAGGAGAGTTCTTTCTGTTTTATAGCTATTCTTCTGTGTCAGGAGGCCCTCTTCTAGTTGCGCTTGTTGCAGGAGATGCTGCCATTAAGTTTGAGCTGATGTCTCCCGTGGAATCTGTGAATAGGGTGTTGGAGATACTGAGGGGCATTTTCCACCCGAAAGGTATTGCTGTTCCGGAACCTATTCAGGCAGTGTGCACTCGGTGGGGGAAGGATGACTTTGCATACGGGTCATATTCATATGTTGCAGTAGGTTCTTCAGGAGATGATTACGATATTCTTGCAGAGAGCATTGGGGATGGGAGAGTATTCTTTGCTGGAGAGGCCACTAACAAGCAGTATCCGGCAACAATGCATGGAGCCTTGCTCAGTGGGATGAGAGAGGCTGCTAACATGTTGAGAGTAGCTAAAAGAAGGTCAATAATCCCCTCACAGAAATTTAATAATGCTTCCGAGGACAATGAGGATTTGGATAAATTATTTGATACCCCTGACTTAACATTTGGGAGCTTCTCTGTTTTGTTCGATCCCAGGTCATCGGATCCTGATTCTTCATCCCTGTTTAGGGTTAAACTCGGAGGGGAAAAGTTGGACATGGGATGTTTCAGTTTGTATGGCTTAATATCAAAGAAGCATGCCTTCAAGCTGAGAGATGTAGAAGGTGATGGGAACAGGATGACAATGTTGAATTTTGAATTCGGAGTGAGGCTGGTTGGGAGAAAAGGTCTGAGTGGTGTTGCGGAATCTCTGATCACCTGCATTAGATTAGCAAAATCAGGTATGAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 bHLH-MYC_N

Protein Analysis

801

Amino Acids

87.85

Weight (kDa)

5.21

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	141 - 214	2.1e-14	SWIRM domain
NAD_binding_8	PF13450	238 - 297	1.4e-11	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	243 - 671	2.1e-87	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74580 AT1G74580 AT1G74580
fragaria_vesca	FvH4_5g15040
malus_domestica	MD06G1192500.v1.1
prunus_persica	Prupe.5G192300_v2.0.a1 Prupe.5G192300_v2.0.a1 Prupe.5G192300_v2.0.a1 Prupe.5G192300_v2.0.a1
pyrus_communis	pycom06g17060
rosa_chinensis	RchiOBHm_Chr7g0181161
rosa_laevigata	RLG00000005208
rosa_multiflora	Rmu_sc0001147.1_g000017 Rmu_sc0027076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272220
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0438800 Rorug06G0438800 Rorug06G0438900 Rorug06G0439000 Rorug06G0439100 Rorug06G0439200 Rorug06G0439300 Rorug06G0439400
rosa_samantha	Rh7AG040900 Rh7BG040300 Rh7CG042300 Rh7DG040700
rosa_wichuraiana	Rw7G003380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1557
AarI	CACCTGC	1 cut(s)	2378
AatII	GACGTC	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	2378
AccB1I	GGYRCC	1 cut(s)	154
AccBSI	CCGCTC	1 cut(s)	90
AccI	GTMKAC	3 cut(s)	375, 417, 597
AccIII	TCCGGA	2 cut(s)	498, 1789
AcoI	YGGCCR	4 cut(s)	339, 729, 744, 1396
AcsI	RAATTY	5 cut(s)	988, 1466, 2051, 2302, 2309
AcuI	CTGAAG	2 cut(s)	231, 1857
AcyI	GRCGYC	2 cut(s)	48, 289
AdeI	CACNNNGTG	1 cut(s)	1818
AfiI	CCNNNNNNNGG	7 cut(s)	139, 464, 522, 904, 1318, 2178, 2179
AflII	CTTAAG	1 cut(s)	1448
AflIII	ACRYGT	1 cut(s)	2007
AgsI	TTSAA	6 cut(s)	772, 1466, 1531, 2257, 2302, 2309
AjnI	CCWGG	6 cut(s)	515, 548, 746, 802, 1398, 2144
AjuI	GAANNNNNNNTTGG	4 cut(s)	521, 553, 1727, 1759
Alw21I	GWGCWC	2 cut(s)	627, 1814
Alw26I	GTCTC	5 cut(s)	58, 257, 1289, 1566, 1722
Alw44I	GTGCAC	1 cut(s)	1810
Aor13HI	TCCGGA	2 cut(s)	498, 1789
ApaLI	GTGCAC	1 cut(s)	1810
ApeKI	GCWGC	6 cut(s)	8, 851, 854, 928, 1694, 2000
ApoI	RAATTY	5 cut(s)	988, 1466, 2051, 2302, 2309
ArsI	GACNNNNNNTTYG	2 cut(s)	2099, 2131
Asp700I	GAANNNNTTC	3 cut(s)	308, 1116, 1797
AspLEI	GCGC	2 cut(s)	169, 1678
AspS9I	GGNCC	8 cut(s)	13, 248, 254, 354, 454, 525, 1321, 1661
AsuC2I	CCSGG	2 cut(s)	252, 1284
AsuHPI	GGTGA	6 cut(s)	76, 871, 955, 1277, 2288, 2359
AsuII	TTCGAA	1 cut(s)	1120
AsuNHI	GCTAGC	1 cut(s)	646
AvaII	GGWCC	6 cut(s)	13, 248, 254, 354, 454, 525
AxyI	CCTNAGG	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	1814
BalI	TGGCCA	2 cut(s)	341, 1398
BamHI	GGATCC	3 cut(s)	1144, 1603, 2155
BanI	GGYRCC	1 cut(s)	154
BanII	GRGCYC	2 cut(s)	101, 1312
BbsI	GAAGAC	2 cut(s)	219, 824
Bbv12I	GWGCWC	2 cut(s)	627, 1814
BbvI	GCAGC	6 cut(s)	20, 838, 866, 915, 1681, 1987
BccI	CCATC	9 cut(s)	212, 331, 470, 680, 968, 1252, 1367, 1907, 2273
BceAI	ACGGC	2 cut(s)	276, 643
BcgI	CGANNNNNNTGC	2 cut(s)	1877, 1911
BciT130I	CCWGG	6 cut(s)	517, 550, 748, 804, 1400, 2146
BciVI	GTATCC	1 cut(s)	1965
BclI	TGATCA	1 cut(s)	2364
BcnI	CCSGG	2 cut(s)	252, 1284
BcoDI	GTCTC	5 cut(s)	58, 257, 1289, 1566, 1722
BfaI	CTAG	3 cut(s)	647, 902, 1670
BfmI	CTRYAG	2 cut(s)	852, 1083
BfoI	RGCGCY	1 cut(s)	170
BfrI	CTTAAG	1 cut(s)	1448
BfuAI	ACCTGC	1 cut(s)	2378
BfuI	GTATCC	1 cut(s)	1965
BisI	GCNGC	8 cut(s)	9, 349, 744, 852, 855, 929, 1695, 2001
BlsI	GCNGC	8 cut(s)	10, 350, 745, 853, 856, 930, 1696, 2002
Bme1390I	CCNGG	8 cut(s)	252, 517, 550, 748, 804, 1284, 1400, 2146
Bme18I	GGWCC	6 cut(s)	13, 248, 254, 354, 454, 525
BmgT120I	GGNCC	8 cut(s)	13, 248, 254, 354, 454, 525, 1321, 1661
BmrFI	CCNGG	8 cut(s)	252, 517, 550, 748, 804, 1284, 1400, 2146
BmsI	GCATC	3 cut(s)	1183, 1489, 1681
BmtI	GCTAGC	1 cut(s)	650
BpiI	GAAGAC	2 cut(s)	219, 824
BplI	GAGNNNNNCTC	2 cut(s)	1965, 1997
BpmI	CTGGAG	4 cut(s)	584, 599, 825, 1953
Bpu10I	CCTNAGC	1 cut(s)	1140
Bpu14I	TTCGAA	1 cut(s)	1120
BpuEI	CTTGAG	1 cut(s)	168
BpuMI	CCSGG	2 cut(s)	252, 1284
BsaBI	GATNNNNATC	1 cut(s)	1173
BsaHI	GRCGYC	2 cut(s)	48, 289
BsaI	GGTCTC	2 cut(s)	257, 1289
BsaJI	CCNNGG	5 cut(s)	138, 549, 1722, 2067, 2144
BsaWI	WCCGGW	4 cut(s)	412, 498, 881, 1789
BsaXI	ACNNNNNCTCC	6 cut(s)	38, 68, 798, 828, 2323, 2353
Bsc4I	CCNNNNNNNGG	7 cut(s)	139, 464, 522, 904, 1318, 2178, 2179
Bse118I	RCCGGY	1 cut(s)	731
Bse1I	ACTGG	2 cut(s)	133, 1113
Bse21I	CCTNAGG	1 cut(s)	102
Bse3DI	GCAATG	3 cut(s)	709, 1068, 1297
Bse8I	GATNNNNATC	1 cut(s)	1173
BseAI	TCCGGA	2 cut(s)	498, 1789
BseBI	CCWGG	6 cut(s)	517, 550, 748, 804, 1400, 2146
BseDI	CCNNGG	5 cut(s)	138, 549, 1722, 2067, 2144
BseGI	GGATG	8 cut(s)	204, 1249, 1834, 1918, 1995, 2168, 2219, 2295
BseJI	GATNNNNATC	1 cut(s)	1173
BseLI	CCNNNNNNNGG	7 cut(s)	139, 464, 522, 904, 1318, 2178, 2179
BseMI	GCAATG	3 cut(s)	709, 1068, 1297
BseMII	CTCAG	8 cut(s)	116, 684, 1154, 1590, 1745, 1996, 2252, 2333
BseNI	ACTGG	2 cut(s)	133, 1113
BseRI	GAGGAG	4 cut(s)	184, 446, 449, 1632
BseSI	GKGCMC	1 cut(s)	1814
BseXI	GCAGC	6 cut(s)	20, 838, 866, 915, 1681, 1987
BsgI	GTGCAG	1 cut(s)	1089
BshNI	GGYRCC	1 cut(s)	154
BsiHKAI	GWGCWC	2 cut(s)	627, 1814
BslFI	GGGAC	4 cut(s)	440, 1114, 1427, 1457
BslI	CCNNNNNNNGG	7 cut(s)	139, 464, 522, 904, 1318, 2178, 2179
BsmAI	GTCTC	5 cut(s)	58, 257, 1289, 1566, 1722
BsmBI	CGTCTC	1 cut(s)	58
BsmFI	GGGAC	4 cut(s)	440, 1114, 1427, 1457
BsmI	GAATGC	1 cut(s)	1164
Bso31I	GGTCTC	2 cut(s)	257, 1289
Bsp119I	TTCGAA	1 cut(s)	1120
Bsp1286I	GDGCHC	4 cut(s)	101, 627, 1312, 1814
Bsp13I	TCCGGA	2 cut(s)	498, 1789
BspCNI	CTCAG	8 cut(s)	115, 685, 1153, 1591, 1746, 1995, 2253, 2334
BspEI	TCCGGA	2 cut(s)	498, 1789
BspMAI	CTGCAG	1 cut(s)	856
BspMI	ACCTGC	1 cut(s)	2378
BspOI	GCTAGC	1 cut(s)	650
BspT104I	TTCGAA	1 cut(s)	1120
BspT107I	GGYRCC	1 cut(s)	154
BspTI	CTTAAG	1 cut(s)	1448
BspTNI	GGTCTC	2 cut(s)	257, 1289
BsrBI	CCGCTC	1 cut(s)	90
BsrDI	GCAATG	3 cut(s)	709, 1068, 1297
BsrFI	RCCGGY	1 cut(s)	731
BsrI	ACTGG	2 cut(s)	133, 1113
BssAI	RCCGGY	1 cut(s)	731
BssECI	CCNNGG	5 cut(s)	138, 549, 1722, 2067, 2144
BssNI	GRCGYC	2 cut(s)	48, 289
Bst2UI	CCWGG	6 cut(s)	517, 550, 748, 804, 1400, 2146
Bst4CI	ACNGT	3 cut(s)	1348, 1432, 2403
Bst6I	CTCTTC	4 cut(s)	939, 1117, 1487, 1671
BstACI	GRCGYC	2 cut(s)	48, 289
BstAFI	CTTAAG	1 cut(s)	1448
BstAPI	GCANNNNNTGC	1 cut(s)	1691
BstBI	TTCGAA	1 cut(s)	1120
BstC8I	GCNNGC	6 cut(s)	165, 480, 558, 648, 1308, 2250
BstDEI	CTNAG	9 cut(s)	102, 693, 1052, 1140, 1599, 1754, 1982, 2261, 2342
BstDSI	CCRYGG	1 cut(s)	1722
BstEII	GGTNACC	1 cut(s)	1265
BstENI	CCTNNNNNAGG	1 cut(s)	1316
BstF5I	GGATG	8 cut(s)	204, 1249, 1834, 1918, 1995, 2168, 2219, 2295
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	2 cut(s)	169, 1678
BstMAI	GTCTC	5 cut(s)	58, 257, 1289, 1566, 1722
BstMWI	GCNNNNNNNGC	8 cut(s)	96, 392, 728, 925, 1112, 1682, 1691, 1937
BstNI	CCWGG	6 cut(s)	517, 550, 748, 804, 1400, 2146
BstNSI	RCATGY	3 cut(s)	1061, 2011, 2252
BstPI	GGTNACC	1 cut(s)	1265
BstSCI	CCNGG	8 cut(s)	250, 515, 548, 746, 802, 1282, 1398, 2144
BstSFI	CTRYAG	2 cut(s)	852, 1083
BstSLI	GKGCMC	1 cut(s)	1814
BstV1I	GCAGC	6 cut(s)	20, 838, 866, 915, 1681, 1987
BstV2I	GAAGAC	2 cut(s)	219, 824
BstX2I	RGATCY	4 cut(s)	949, 1144, 1603, 2155
BstXI	CCANNNNNNTGG	2 cut(s)	556, 754
BstYI	RGATCY	4 cut(s)	949, 1144, 1603, 2155
Bsu36I	CCTNAGG	1 cut(s)	102
BsuI	GTATCC	1 cut(s)	1965
BtgI	CCRYGG	1 cut(s)	1722
BtsCI	GGATG	8 cut(s)	204, 1249, 1834, 1918, 1995, 2168, 2219, 2295
BtsI	GCAGTG	1 cut(s)	1812
BtsIMutI	CAGTG	4 cut(s)	1106, 1428, 1812, 1990
BveI	ACCTGC	1 cut(s)	2378
Cac8I	GCNNGC	6 cut(s)	165, 480, 558, 648, 1308, 2250
CfoI	GCGC	2 cut(s)	169, 1678
Cfr10I	RCCGGY	1 cut(s)	731
Cfr13I	GGNCC	8 cut(s)	13, 248, 254, 354, 454, 525, 1321, 1661
CpoI	CGGWCCG	2 cut(s)	248, 354
CseI	GACGC	1 cut(s)	297
CspI	CGGWCCG	2 cut(s)	248, 354
CviAII	CATG	6 cut(s)	1058, 1417, 1970, 2008, 2209, 2249
DdeI	CTNAG	9 cut(s)	102, 693, 1052, 1140, 1599, 1754, 1982, 2261, 2342
DraIII	CACNNNGTG	1 cut(s)	1818
EaeI	YGGCCR	4 cut(s)	339, 729, 744, 1396
Eam1104I	CTCTTC	4 cut(s)	939, 1117, 1487, 1671
EarI	CTCTTC	4 cut(s)	939, 1117, 1487, 1671
EciI	GGCGGA	1 cut(s)	483
Eco147I	AGGCCT	1 cut(s)	802
Eco24I	GRGCYC	2 cut(s)	101, 1312
Eco31I	GGTCTC	2 cut(s)	257, 1289
Eco47I	GGWCC	6 cut(s)	13, 248, 254, 354, 454, 525
Eco57I	CTGAAG	2 cut(s)	231, 1857
Eco81I	CCTNAGG	1 cut(s)	102
Eco91I	GGTNACC	1 cut(s)	1265
EcoNI	CCTNNNNNAGG	1 cut(s)	1316
EcoO109I	RGGNCCY	2 cut(s)	1321, 1661
EcoO65I	GGTNACC	1 cut(s)	1265
EcoRI	GAATTC	2 cut(s)	988, 2309
EcoRII	CCWGG	6 cut(s)	515, 548, 746, 802, 1398, 2144
EcoT22I	ATGCAT	1 cut(s)	1971
EcoT38I	GRGCYC	2 cut(s)	101, 1312
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	6 cut(s)	1061, 1420, 1973, 2011, 2212, 2252
FalI	AAGNNNNNCTT	4 cut(s)	1817, 1849, 2237, 2269
FaqI	GGGAC	4 cut(s)	440, 1114, 1427, 1457
FatI	CATG	6 cut(s)	1057, 1416, 1969, 2007, 2208, 2248
FauI	CCCGC	2 cut(s)	95, 250
FauNDI	CATATG	1 cut(s)	1855
FbaI	TGATCA	1 cut(s)	2364
FblI	GTMKAC	3 cut(s)	375, 417, 597
Fnu4HI	GCNGC	8 cut(s)	9, 349, 744, 852, 855, 929, 1695, 2001
FokI	GGATG	8 cut(s)	191, 1256, 1841, 1925, 2002, 2155, 2226, 2302
FriOI	GRGCYC	2 cut(s)	101, 1312
Fsp4HI	GCNGC	8 cut(s)	9, 349, 744, 852, 855, 929, 1695, 2001
FspBI	CTAG	3 cut(s)	647, 902, 1670
GlaI	GCGC	2 cut(s)	168, 1677
GluI	GCNGC	8 cut(s)	9, 349, 744, 852, 855, 929, 1695, 2001
GsuI	CTGGAG	4 cut(s)	584, 599, 825, 1953
HaeII	RGCGCY	1 cut(s)	170
HgaI	GACGC	1 cut(s)	297
HhaI	GCGC	2 cut(s)	169, 1678
Hin1I	GRCGYC	2 cut(s)	48, 289
Hin1II	CATG	6 cut(s)	1061, 1420, 1973, 2011, 2212, 2252
Hin6I	GCGC	2 cut(s)	167, 1676
HinP1I	GCGC	2 cut(s)	167, 1676
HincII	GTYRAC	3 cut(s)	376, 546, 598
HindII	GTYRAC	3 cut(s)	376, 546, 598
HindIII	AAGCTT	3 cut(s)	603, 1049, 1113
HphI	GGTGA	6 cut(s)	76, 871, 955, 1277, 2288, 2359
Hpy166II	GTNNAC	6 cut(s)	376, 418, 546, 598, 1387, 1812
Hpy8I	GTNNAC	6 cut(s)	376, 418, 546, 598, 1387, 1812
Hpy99I	CGWCG	7 cut(s)	50, 53, 154, 291, 297, 337, 497
HpyAV	CCTTC	8 cut(s)	284, 782, 1334, 1447, 1819, 2022, 2263, 2267
HpyCH4III	ACNGT	3 cut(s)	1348, 1432, 2403
HpyCH4IV	ACGT	2 cut(s)	48, 450
HpyF10VI	GCNNNNNNNGC	8 cut(s)	96, 392, 728, 925, 1112, 1682, 1691, 1937
HpyF3I	CTNAG	9 cut(s)	102, 693, 1052, 1140, 1599, 1754, 1982, 2261, 2342
HpySE526I	ACGT	2 cut(s)	48, 450
Hsp92I	GRCGYC	2 cut(s)	48, 289
Hsp92II	CATG	6 cut(s)	1061, 1420, 1973, 2011, 2212, 2252
HspAI	GCGC	2 cut(s)	167, 1676
Kpn2I	TCCGGA	2 cut(s)	498, 1789
Ksp22I	TGATCA	1 cut(s)	2364
LmnI	GCTCC	9 cut(s)	316, 553, 580, 622, 655, 719, 925, 1973, 2121
Lsp1109I	GCAGC	6 cut(s)	20, 838, 866, 915, 1681, 1987
LweI	GCATC	3 cut(s)	1183, 1489, 1681
MaeI	CTAG	3 cut(s)	647, 902, 1670
MaeII	ACGT	2 cut(s)	48, 450
MaeIII	GTNAC	1 cut(s)	1265
MbiI	CCGCTC	1 cut(s)	90
MfeI	CAATTG	2 cut(s)	920, 1461
MflI	RGATCY	4 cut(s)	949, 1144, 1603, 2155
MhlI	GDGCHC	4 cut(s)	101, 627, 1312, 1814
MlsI	TGGCCA	2 cut(s)	341, 1398
MluNI	TGGCCA	2 cut(s)	341, 1398
MlyI	GAGTC	4 cut(s)	173, 185, 413, 575
MmeI	TCCRAC	2 cut(s)	1725, 2184
Mox20I	TGGCCA	2 cut(s)	341, 1398
Mph1103I	ATGCAT	1 cut(s)	1971
MroI	TCCGGA	2 cut(s)	498, 1789
MroXI	GAANNNNTTC	3 cut(s)	308, 1116, 1797
MscI	TGGCCA	2 cut(s)	341, 1398
MseI	TTAA	9 cut(s)	660, 1023, 1077, 1449, 1701, 2055, 2111, 2184, 2234
MslI	CAYNNNNRTG	1 cut(s)	1208
Msp20I	TGGCCA	2 cut(s)	341, 1398
MspA1I	CMGCKG	2 cut(s)	11, 857
MspCI	CTTAAG	1 cut(s)	1448
MspR9I	CCNGG	8 cut(s)	252, 517, 550, 748, 804, 1284, 1400, 2146
MunI	CAATTG	2 cut(s)	920, 1461
Mva1269I	GAATGC	1 cut(s)	1164
MvaI	CCWGG	6 cut(s)	517, 550, 748, 804, 1400, 2146
MwoI	GCNNNNNNNGC	8 cut(s)	96, 392, 728, 925, 1112, 1682, 1691, 1937
NciI	CCSGG	2 cut(s)	252, 1284
NdeI	CATATG	1 cut(s)	1855
NheI	GCTAGC	1 cut(s)	646
NlaIII	CATG	6 cut(s)	1061, 1420, 1973, 2011, 2212, 2252
NmeAIII	GCCGAG	1 cut(s)	895
NmuCI	GTSAC	1 cut(s)	1265
NsiI	ATGCAT	1 cut(s)	1971
NspI	RCATGY	3 cut(s)	1061, 2011, 2252
NspV	TTCGAA	1 cut(s)	1120
PaeI	GCATGC	1 cut(s)	2252
PaqCI	CACCTGC	1 cut(s)	2378
PceI	AGGCCT	1 cut(s)	802
PciI	ACATGT	1 cut(s)	2007
PcsI	WCGNNNNNNNCGW	3 cut(s)	57, 146, 447
PctI	GAATGC	1 cut(s)	1164
PdmI	GAANNNNTTC	3 cut(s)	308, 1116, 1797
PfeI	GAWTC	6 cut(s)	62, 122, 571, 1727, 2162, 2357
PflFI	GACNNNGTC	3 cut(s)	50, 252, 291
PfoI	TCCNGGA	1 cut(s)	1282
PkrI	GCNGC	8 cut(s)	10, 350, 745, 853, 856, 930, 1696, 2002
PleI	GAGTC	4 cut(s)	173, 185, 413, 574
PpsI	GAGTC	4 cut(s)	173, 185, 413, 574
PscI	ACATGT	1 cut(s)	2007
PsiI	TTATAA	1 cut(s)	1557
Psp6I	CCWGG	6 cut(s)	515, 548, 746, 802, 1398, 2144
PspEI	GGTNACC	1 cut(s)	1265
PspGI	CCWGG	6 cut(s)	515, 548, 746, 802, 1398, 2144
PspPI	GGNCC	8 cut(s)	13, 248, 254, 354, 454, 525, 1321, 1661
PstI	CTGCAG	1 cut(s)	856
PsuI	RGATCY	4 cut(s)	949, 1144, 1603, 2155
PsyI	GACNNNGTC	3 cut(s)	50, 252, 291
PvuII	CAGCTG	1 cut(s)	857
RseI	CAYNNNNRTG	1 cut(s)	1208
Rsr2I	CGGWCCG	2 cut(s)	248, 354
RsrII	CGGWCCG	2 cut(s)	248, 354
SalI	GTCGAC	2 cut(s)	374, 596
SaqAI	TTAA	9 cut(s)	660, 1023, 1077, 1449, 1701, 2055, 2111, 2184, 2234
SatI	GCNGC	8 cut(s)	9, 349, 744, 852, 855, 929, 1695, 2001
Sau96I	GGNCC	8 cut(s)	13, 248, 254, 354, 454, 525, 1321, 1661
SchI	GAGTC	4 cut(s)	173, 185, 413, 575
ScrFI	CCNGG	8 cut(s)	252, 517, 550, 748, 804, 1284, 1400, 2146
SduI	GDGCHC	4 cut(s)	101, 627, 1312, 1814
SfaNI	GCATC	3 cut(s)	1183, 1489, 1681
SfcI	CTRYAG	2 cut(s)	852, 1083
SfuI	TTCGAA	1 cut(s)	1120
SinI	GGWCC	6 cut(s)	13, 248, 254, 354, 454, 525
SmiMI	CAYNNNNRTG	1 cut(s)	1208
SmlI	CTYRAG	2 cut(s)	183, 1448
SmoI	CTYRAG	2 cut(s)	183, 1448
SphI	GCATGC	1 cut(s)	2252
SseBI	AGGCCT	1 cut(s)	802
SspMI	CTAG	3 cut(s)	647, 902, 1670
StuI	AGGCCT	1 cut(s)	802
StyD4I	CCNGG	8 cut(s)	250, 515, 548, 746, 802, 1282, 1398, 2144
TaaI	ACNGT	3 cut(s)	1348, 1432, 2403
TaiI	ACGT	2 cut(s)	51, 453
TaqI	TCGA	9 cut(s)	95, 335, 375, 441, 569, 597, 1120, 1408, 2139
TaqII	GACCGA	1 cut(s)	371
TauI	GCSGC	2 cut(s)	351, 746
TfiI	GAWTC	6 cut(s)	62, 122, 571, 1727, 2162, 2357
Tru1I	TTAA	9 cut(s)	660, 1023, 1077, 1449, 1701, 2055, 2111, 2184, 2234
Tru9I	TTAA	9 cut(s)	660, 1023, 1077, 1449, 1701, 2055, 2111, 2184, 2234
TscAI	CASTG	4 cut(s)	1113, 1435, 1812, 1990
TseFI	GTSAC	1 cut(s)	1265
TseI	GCWGC	6 cut(s)	8, 851, 854, 928, 1694, 2000
Tsp45I	GTSAC	1 cut(s)	1265
TspDTI	ATGAA	5 cut(s)	240, 845, 926, 1842, 2157
TspGWI	ACGGA	4 cut(s)	321, 329, 1083, 1596
TspRI	CASTG	4 cut(s)	1113, 1435, 1812, 1990
Tth111I	GACNNNGTC	3 cut(s)	50, 252, 291
Vha464I	CTTAAG	1 cut(s)	1448
VneI	GTGCAC	1 cut(s)	1810
VpaK11BI	GGWCC	6 cut(s)	13, 248, 254, 354, 454, 525
XagI	CCTNNNNNAGG	1 cut(s)	1316
XapI	RAATTY	5 cut(s)	988, 1466, 2051, 2302, 2309
XceI	RCATGY	3 cut(s)	1061, 2011, 2252
XmiI	GTMKAC	3 cut(s)	375, 417, 597
XmnI	GAANNNNTTC	3 cut(s)	308, 1116, 1797
XspI	CTAG	3 cut(s)	647, 902, 1670
ZraI	GACGTC	1 cut(s)	49
Zsp2I	ATGCAT	1 cut(s)	1971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.