Rh7DG040700
BHLH Family

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004351
Physical Location & Seq
Forward (+)
2976555 .. 2982130
5576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG040700.1

Sequence Viewer

Length: 2328 bp
ATGAGTCGGGCTTTACTTCCTAAGCATATTTCTGCTGTTGTGAAATGTCAAAAGGATCCTCTCAAAGCGCTTGAGATGTTTAATTCGGTGAAGAAGGAAGATGAGTTTAAGCACACATTGTCAACTTACAAGTGTATGATTGAGAAGCTTGGGTTTCATGGGGAGTTTGAAGCCATGGAGCTTGTGCTTGCCGAGATGAGGATGAATATCGATAACAGGTTACTAGAGGGAGTGTACATTGGGGCCATGAGGCATTATGGAAGGAAAGGAAAGATTGAAGAAGCTGTGAATGTGTTTCACCGGATGGATTTTTTTAATTGTGAGCCCTCAGTTCAGTCTTATAATGCAATCATGAATATACTGGTTGAGTATGGGTATTTCAATCAATCCCATAAGGTGTATATGAGGATGAGAGATAACGGGATTACCCCGGATGTGTATACTTATACTATACGAATAAAGTGTTTCTGTAGGACTAGTAGGCCTCATGCTGCATTGAGGCTCCTTAATAACATGCCTTCACAGGGGTGTGAGTTCAATGCTGTTGCATATTGTACAGTCATTAGTGGATTTTATGAAGAGAATTATCGGATAGAGGCATATGAATTGTTTGAAGACATGCTTGGGCAAGGTATATGCCCTGATGTTACCACATTTAATAAGCTTATACATACCCTGTCCAAGAAGGGGGATGTCCAAGAAAGCGAAAAACTTCTCAACAAGGTTCTGAAGAGGGGAGTGTCTCCAAATTTGTTTACACTTAATATATTCATTCAAGGGCTGTGCAAAAGAGGTTCCATTGATGGGGCTGTCAGAATGTTAGATGGTTTTGTGAAGGAAGGTCTGACTCCAGATGTTGTCACGTATAATACATTGATCTTTGGTTTGTGTAAAAACTTCAGGGTTGAGGAAGCAGAGTCCTATCTGCGTAAAATGGTGAACAATGGATTTCAGCCTGATGCCTTTACCTACAACAGTATTGTTGATGGATATTGCAAATTGGGCATGATACAGAAAGCAGAAAAGATTCTCAGTGACGCCATCTTCAAGGGGTTTGTGCCTGATGAGTTCACGTATTGCTCTTTAATTAAGGGGTTTTGCCAGGATGGTGACATAGAACGTGCCATAGCAGTGTTTAAGGAGGCATTGGGCAAGGGTTTAAAGCTTAATATTGTTCTCTTTAACACATTGGTAAAAGGGTTGTCACAGAATGGGCTTATCTTGCAAGCCTTACAATTAATGAATGAGATGTCGGAAAATGGTTGCAGTCCCAATATCTGGACTTACAATTTGGTTATAAATGGGTTGTGCAAGATGGGTTATGTTTCTGATGCCACTAGACTTGTTGATGATGCTATTGCCAAAGGTTACCTTCCTGACATATTTACGTTTAATACAATAATTGATGGTTACTGTAAACAGTTGAATCTGAATAATGCTATCGAGATAATAAATAGCATGTGGAGTCATGGTGTTACTCCTGATGTGATCACATATAATACTGTGTTAAATGGCCTTTGCAAGTCTGCAAAATATGAGGATGTGATGTGCACTTTTCAAGCGATGATGGAGAAAGGGTGTGTTCCTAACATCGTTACGTATAACATACTTGTAGAAAGCCTTTGCAAAGCTAGGAAAGTAAATGAGGCCCTGGACATGCTACAGGAAATTAGGAACAAGGGCTTGACTCCAGATATTGTTTGTTTTGGCACATTGATGAGTGGTTTGTGCAGCAATGGGGATTTGGATGGAGCATACCATCTATTTAGAAGAATGAAAAGGGAATATGATATATCACCTACAACAGCAACATACAATATCATGATCAATGCTTTGTGTGAAAAACTAGAAATGAGTACTGCAGAAAAGCTTTTTTGTGAGATGTGTGACAGTGACAGTAACAGTAACAGTGTGCCGGACTGTTTCACGTACCGTGTCATGATTGATGGTTTCTGCAAAGCAGGAAACAGTGATTCAGGGTGCAATTTCCTTCTGAAAAAGATTGAGAAAGGGTTCGTTCCAGCATTGGTGACATTTGGAAGAGTCCTAAATTGTCTTTGCATGAAGCATAGAGTTCATGAAGCTGTTGGTATCATCCACCTGATGGTCCGCAAAGGCATTGTTCCTGTGGTTGTCAATTCAATATTCGAGGTCGATAAGAAGGAAATAGCAGCACCTAAGATTCTTGTAGAAGATTTATTGAAGAAGGGCCATGTAACTTATTCTGCATATGAGCTTCTATATGATGGAATTAGAGATAAAAAGCTGGTCAAGAAAACAAAGAAAGGTTCCACACCACTTACTGCAACTCGACAACAAACTAAGTGA

Protein Analysis

775

Amino Acids

87.45

Weight (kDa)

8.16

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 83 - 118 8.5e-06 PPR repeat family
PPR_2 PF13041 109 - 158 1.5e-12 PPR repeat family
PPR_1 PF12854 140 - 172 6.8e-06 PPR repeat
PPR_2 PF13041 153 - 191 1e-06 PPR repeat family
PPR_long PF17177 177 - 284 2.1e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 180 - 228 1.5e-08 PPR repeat family
PPR_3 PF13812 203 - 259 4.6e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 214 - 263 1.8e-13 PPR repeat family
PPR_1 PF12854 245 - 275 2.5e-08 PPR repeat
PPR_2 PF13041 252 - 298 7.9e-12 PPR repeat family
PPR_1 PF12854 281 - 313 4.3e-12 PPR repeat
PPR_2 PF13041 284 - 333 1.4e-17 PPR repeat family
PPR PF01535 287 - 317 7.7e-08 PPR repeat
PPR_1 PF12854 315 - 345 1.7e-09 PPR repeat
PPR_2 PF13041 322 - 368 4.5e-13 PPR repeat family
PPR PF01535 322 - 351 1e-05 PPR repeat
PPR_1 PF12854 350 - 381 2.1e-10 PPR repeat
PPR PF01535 357 - 387 6.5e-06 PPR repeat
PPR_long PF17177 367 - 503 2.7e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 378 - 434 5.7e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 385 - 418 1.5e-06 PPR repeat
PPR_2 PF13041 390 - 438 6.6e-16 PPR repeat family
PPR_1 PF12854 420 - 451 1.5e-10 PPR repeat
PPR_3 PF13812 447 - 504 4.7e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 455 - 487 2e-09 PPR repeat
PPR_2 PF13041 459 - 508 4.6e-17 PPR repeat family
TPR_24 PF23276 463 - 556 3.1e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 490 - 539 4.2e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 491 - 509 2.2e-06 PPR repeat
PPR_2 PF13041 494 - 543 2.1e-16 PPR repeat family
PPR_long PF17177 499 - 609 6.3e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 525 - 557 1.3e-11 PPR repeat
PPR_2 PF13041 529 - 577 5.5e-14 PPR repeat family
PPR PF01535 532 - 562 4.4e-06 PPR repeat
PPR_3 PF13812 553 - 612 8.2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 560 - 593 1.4e-10 PPR repeat
PPR_2 PF13041 564 - 613 1.5e-14 PPR repeat family
PPR PF01535 567 - 595 6.2e-06 PPR repeat
PPR_1 PF12854 598 - 628 3.9e-07 PPR repeat
PPR_2 PF13041 600 - 653 2.1e-12 PPR repeat family
PPR_1 PF12854 637 - 659 3.9e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 342, 1298
AccB7I CCANNNNNTGG 2 cut(s) 1278, 2104
AccI GTMKAC 1 cut(s) 440
AciI CCGC 1 cut(s) 2110
AclWI GGATC 2 cut(s) 50, 63
AcsI RAATTY 1 cut(s) 748
AcuI CTGAAG 2 cut(s) 749, 883
AcyI GRCGYC 1 cut(s) 1038
AfaI GTAC 4 cut(s) 236, 556, 1858, 1931
AfeI AGCGCT 1 cut(s) 69
AfiI CCNNNNNNNGG 6 cut(s) 198, 524, 687, 804, 1278, 2104
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 2 cut(s) 1101, 1650
AjuI GAANNNNNNNTTGG 2 cut(s) 606, 638
AleI CACNNNNGTG 1 cut(s) 526
Alw21I GWGCWC 1 cut(s) 1553
Alw26I GTCTC 1 cut(s) 747
Alw44I GTGCAC 1 cut(s) 1549
AlwI GGATC 2 cut(s) 50, 63
Aor51HI AGCGCT 1 cut(s) 69
AoxI GGCC 5 cut(s) 243, 482, 1513, 1647, 2209
ApaLI GTGCAC 1 cut(s) 1549
ApeKI GCWGC 3 cut(s) 491, 1731, 2171
ApoI RAATTY 1 cut(s) 748
ArsI GACNNNNNNTTYG 2 cut(s) 1273, 1305
AseI ATTAAT 1 cut(s) 1238
Asp700I GAANNNNTTC 3 cut(s) 711, 1026, 2012
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 4 cut(s) 243, 1648, 2107, 2209
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 6 cut(s) 100, 290, 949, 1121, 1788, 2041
AvaII GGWCC 1 cut(s) 2107
BaeGI GKGCMC 1 cut(s) 1553
BamHI GGATCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 621
Bbv12I GWGCWC 1 cut(s) 1553
BbvI GCAGC 3 cut(s) 478, 1743, 2183
BciT130I CCWGG 2 cut(s) 1103, 1652
BclI TGATCA 2 cut(s) 1488, 1824
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 747
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 5 cut(s) 224, 477, 1338, 1632, 1847
BfmI CTRYAG 3 cut(s) 469, 1661, 1860
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 3 cut(s) 492, 1732, 2172
BlsI GCNGC 3 cut(s) 493, 1733, 2173
BmcAI AGTACT 1 cut(s) 1858
Bme1390I CCNGG 3 cut(s) 431, 1103, 1652
Bme18I GGWCC 1 cut(s) 2107
BmgT120I GGNCC 4 cut(s) 243, 1648, 2107, 2209
BmiI GGNNCC 5 cut(s) 57, 244, 503, 796, 2290
BmrFI CCNGG 3 cut(s) 431, 1103, 1652
BmsI GCATC 3 cut(s) 949, 1321, 1342
BpiI GAAGAC 1 cut(s) 621
BpmI CTGGAG 2 cut(s) 834, 1674
Bpu10I CCTNAGC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 431
Bsa29I ATCGAT 1 cut(s) 210
BsaAI YACGTR 4 cut(s) 864, 1074, 1599, 1929
BsaBI GATNNNNATC 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 1038
BsaJI CCNNGG 3 cut(s) 174, 429, 1650
BsaWI WCCGGW 1 cut(s) 300
BsaXI ACNNNNNCTCC 4 cut(s) 1456, 1486, 1562, 1592
Bsc4I CCNNNNNNNGG 6 cut(s) 198, 524, 687, 804, 1278, 2104
Bse1I ACTGG 1 cut(s) 366
Bse3DI GCAATG 1 cut(s) 1741
Bse8I GATNNNNATC 1 cut(s) 206
BseBI CCWGG 2 cut(s) 1103, 1652
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 174, 429, 1650
BseGI GGATG 9 cut(s) 207, 309, 414, 439, 697, 1111, 1546, 1753, 2094
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 6 cut(s) 198, 524, 687, 804, 1278, 2104
BseMI GCAATG 1 cut(s) 1741
BseMII CTCAG 2 cut(s) 342, 1045
BseNI ACTGG 1 cut(s) 366
BseSI GKGCMC 1 cut(s) 1553
BseXI GCAGC 3 cut(s) 478, 1743, 2183
BsgI GTGCAG 1 cut(s) 1750
BshFI GGCC 5 cut(s) 245, 484, 1515, 1649, 2211
BshVI ATCGAT 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 1553
BsiSI CCGG 3 cut(s) 301, 431, 1916
BslFI GGGAC 1 cut(s) 1254
BslI CCNNNNNNNGG 6 cut(s) 198, 524, 687, 804, 1278, 2104
BsmAI GTCTC 1 cut(s) 747
BsmFI GGGAC 1 cut(s) 1254
BsnI GGCC 5 cut(s) 245, 484, 1515, 1649, 2211
Bsp1286I GDGCHC 2 cut(s) 327, 1553
Bsp1407I TGTACA 2 cut(s) 234, 554
Bsp143I GATC 4 cut(s) 55, 876, 1488, 1824
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 1 cut(s) 2110
BspANI GGCC 5 cut(s) 245, 484, 1515, 1649, 2211
BspCNI CTCAG 2 cut(s) 341, 1044
BspDI ATCGAT 1 cut(s) 210
BspHI TCATGA 4 cut(s) 351, 1821, 1938, 2077
BspLI GGNNCC 5 cut(s) 57, 244, 503, 796, 2290
BspMAI CTGCAG 1 cut(s) 1864
BspPI GGATC 2 cut(s) 50, 63
BsrDI GCAATG 1 cut(s) 1741
BsrGI TGTACA 2 cut(s) 234, 554
BsrI ACTGG 1 cut(s) 366
BssECI CCNNGG 3 cut(s) 174, 429, 1650
BssMI GATC 4 cut(s) 55, 876, 1488, 1824
BssNAI GTATAC 1 cut(s) 441
BssNI GRCGYC 1 cut(s) 1038
BssT1I CCWWGG 1 cut(s) 174
Bst1107I GTATAC 1 cut(s) 441
Bst2UI CCWGG 2 cut(s) 1103, 1652
Bst6I CTCTTC 3 cut(s) 573, 725, 2035
BstACI GRCGYC 1 cut(s) 1038
BstAUI TGTACA 2 cut(s) 234, 554
BstBAI YACGTR 4 cut(s) 864, 1074, 1599, 1929
BstC8I GCNNGC 2 cut(s) 189, 1227
BstDEI CTNAG 5 cut(s) 21, 328, 1031, 2178, 2322
BstDSI CCRYGG 1 cut(s) 174
BstEII GGTNACC 1 cut(s) 1367
BstF5I GGATG 9 cut(s) 207, 309, 414, 439, 697, 1111, 1546, 1753, 2094
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 4 cut(s) 58, 879, 1491, 1827
BstMAI GTCTC 1 cut(s) 747
BstMBI GATC 4 cut(s) 55, 876, 1488, 1824
BstMWI GCNNNNNNNGC 2 cut(s) 1002, 1222
BstNI CCWGG 2 cut(s) 1103, 1652
BstNSI RCATGY 4 cut(s) 517, 622, 1462, 1660
BstPI GGTNACC 1 cut(s) 1367
BstSCI CCNGG 3 cut(s) 429, 1101, 1650
BstSFI CTRYAG 3 cut(s) 469, 1661, 1860
BstSLI GKGCMC 1 cut(s) 1553
BstSNI TACGTA 1 cut(s) 1599
BstV1I GCAGC 3 cut(s) 478, 1743, 2183
BstV2I GAAGAC 1 cut(s) 621
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BstZ17I GTATAC 1 cut(s) 441
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 5 cut(s) 245, 484, 1515, 1649, 2211
BsuTUI ATCGAT 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 174
BtgZI GCGATG 1 cut(s) 1577
BtsCI GGATG 9 cut(s) 207, 309, 414, 439, 697, 1111, 1546, 1753, 2094
BtsI GCAGTG 1 cut(s) 1137
BtsIMutI CAGTG 5 cut(s) 1039, 1137, 1897, 1915, 1975
Cac8I GCNNGC 2 cut(s) 189, 1227
CciI TCATGA 4 cut(s) 351, 1821, 1938, 2077
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 4 cut(s) 243, 1648, 2107, 2209
ClaI ATCGAT 1 cut(s) 210
CseI GACGC 1 cut(s) 1046
Csp6I GTAC 4 cut(s) 235, 555, 1857, 1930
CspCI CAANNNNNGTGG 2 cut(s) 1324, 1359
CviQI GTAC 4 cut(s) 235, 555, 1857, 1930
DdeI CTNAG 5 cut(s) 21, 328, 1031, 2178, 2322
DpnI GATC 4 cut(s) 57, 878, 1490, 1826
DpnII GATC 4 cut(s) 55, 876, 1488, 1824
DraI TTTAAA 1 cut(s) 1161
Eam1104I CTCTTC 3 cut(s) 573, 725, 2035
EarI CTCTTC 3 cut(s) 573, 725, 2035
Eco105I TACGTA 1 cut(s) 1599
Eco130I CCWWGG 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 2107
Eco47III AGCGCT 1 cut(s) 69
Eco57I CTGAAG 2 cut(s) 749, 883
Eco91I GGTNACC 1 cut(s) 1367
EcoO109I RGGNCCY 1 cut(s) 1648
EcoO65I GGTNACC 1 cut(s) 1367
EcoRII CCWGG 2 cut(s) 1101, 1650
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 174
FalI AAGNNNNNCTT 4 cut(s) 606, 638, 1356, 1388
FaqI GGGAC 1 cut(s) 1254
FauNDI CATATG 2 cut(s) 601, 2230
FbaI TGATCA 2 cut(s) 1488, 1824
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 3 cut(s) 492, 1732, 2172
FokI GGATG 9 cut(s) 214, 316, 421, 446, 704, 1118, 1553, 1760, 2081
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 3 cut(s) 492, 1732, 2172
FspBI CTAG 5 cut(s) 224, 477, 1338, 1632, 1847
GlaI GCGC 1 cut(s) 69
GluI GCNGC 3 cut(s) 492, 1732, 2172
GsuI CTGGAG 2 cut(s) 834, 1674
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 5 cut(s) 245, 484, 1515, 1649, 2211
HapII CCGG 3 cut(s) 301, 431, 1916
HgaI GACGC 1 cut(s) 1046
HhaI GCGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 1038
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HindIII AAGCTT 4 cut(s) 146, 662, 1163, 1868
HpaII CCGG 3 cut(s) 301, 431, 1916
HphI GGTGA 6 cut(s) 100, 290, 949, 1121, 1788, 2041
Hpy166II GTNNAC 8 cut(s) 123, 235, 441, 756, 940, 1071, 1418, 1551
Hpy188I TCNGA 8 cut(s) 591, 729, 815, 846, 1255, 1330, 1431, 1995
Hpy8I GTNNAC 8 cut(s) 123, 235, 441, 756, 940, 1071, 1418, 1551
HpyCH4IV ACGT 6 cut(s) 863, 1073, 1120, 1388, 1598, 1928
HpyF10VI GCNNNNNNNGC 2 cut(s) 1002, 1222
HpyF3I CTNAG 5 cut(s) 21, 328, 1031, 2178, 2322
HpySE526I ACGT 6 cut(s) 863, 1073, 1120, 1388, 1598, 1928
Hsp92I GRCGYC 1 cut(s) 1038
HspAI GCGC 1 cut(s) 68
Ksp22I TGATCA 2 cut(s) 1488, 1824
Kzo9I GATC 4 cut(s) 55, 876, 1488, 1824
LmnI GCTCC 3 cut(s) 178, 507, 1751
Lsp1109I GCAGC 3 cut(s) 478, 1743, 2183
LweI GCATC 3 cut(s) 949, 1321, 1342
MaeI CTAG 5 cut(s) 224, 477, 1338, 1632, 1847
MaeII ACGT 6 cut(s) 863, 1073, 1120, 1388, 1598, 1928
MalI GATC 4 cut(s) 57, 878, 1490, 1826
MboI GATC 4 cut(s) 55, 876, 1488, 1824
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 327, 1553
MlyI GAGTC 6 cut(s) 13, 841, 926, 1474, 1681, 2052
MmeI TCCRAC 1 cut(s) 1233
MroXI GAANNNNTTC 3 cut(s) 711, 1026, 2012
MslI CAYNNNNRTG 3 cut(s) 526, 1130, 1715
MspI CCGG 3 cut(s) 301, 431, 1916
MspR9I CCNGG 3 cut(s) 431, 1103, 1652
MvaI CCWGG 2 cut(s) 1103, 1652
MwoI GCNNNNNNNGC 2 cut(s) 1002, 1222
NciI CCSGG 1 cut(s) 431
NcoI CCATGG 1 cut(s) 174
NdeI CATATG 2 cut(s) 601, 2230
NdeII GATC 4 cut(s) 55, 876, 1488, 1824
NlaIV GGNNCC 5 cut(s) 57, 244, 503, 796, 2290
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 7 cut(s) 859, 1034, 1109, 1203, 1886, 1892, 2029
NspI RCATGY 4 cut(s) 517, 622, 1462, 1660
OliI CACNNNNGTG 1 cut(s) 526
PacI TTAATTAA 1 cut(s) 1089
PagI TCATGA 4 cut(s) 351, 1821, 1938, 2077
PceI AGGCCT 1 cut(s) 484
PdmI GAANNNNTTC 3 cut(s) 711, 1026, 2012
PfeI GAWTC 4 cut(s) 1027, 1426, 1973, 2182
PflMI CCANNNNNTGG 2 cut(s) 1278, 2104
PkrI GCNGC 3 cut(s) 493, 1733, 2173
PleI GAGTC 6 cut(s) 12, 841, 925, 1473, 1681, 2051
PpsI GAGTC 6 cut(s) 12, 841, 925, 1473, 1681, 2051
Ppu21I YACGTR 4 cut(s) 864, 1074, 1599, 1929
PshBI ATTAAT 1 cut(s) 1238
PsiI TTATAA 2 cut(s) 342, 1298
Psp6I CCWGG 2 cut(s) 1101, 1650
PspEI GGTNACC 1 cut(s) 1367
PspGI CCWGG 2 cut(s) 1101, 1650
PspN4I GGNNCC 5 cut(s) 57, 244, 503, 796, 2290
PspPI GGNCC 4 cut(s) 243, 1648, 2107, 2209
PstI CTGCAG 1 cut(s) 1864
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 4 cut(s) 236, 556, 1858, 1931
RsaNI GTAC 4 cut(s) 235, 555, 1857, 1930
RseI CAYNNNNRTG 3 cut(s) 526, 1130, 1715
SatI GCNGC 3 cut(s) 492, 1732, 2172
Sau3AI GATC 4 cut(s) 55, 876, 1488, 1824
Sau96I GGNCC 4 cut(s) 243, 1648, 2107, 2209
ScaI AGTACT 1 cut(s) 1858
SchI GAGTC 6 cut(s) 13, 841, 926, 1474, 1681, 2052
ScrFI CCNGG 3 cut(s) 431, 1103, 1652
SduI GDGCHC 2 cut(s) 327, 1553
SfaNI GCATC 3 cut(s) 949, 1321, 1342
SfcI CTRYAG 3 cut(s) 469, 1661, 1860
SinI GGWCC 1 cut(s) 2107
SmiMI CAYNNNNRTG 3 cut(s) 526, 1130, 1715
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SnaBI TACGTA 1 cut(s) 1599
SpeI ACTAGT 1 cut(s) 476
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 1 cut(s) 2110
SspI AATATT 2 cut(s) 1171, 2145
SspMI CTAG 5 cut(s) 224, 477, 1338, 1632, 1847
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 3 cut(s) 429, 1101, 1650
StyI CCWWGG 1 cut(s) 174
TaiI ACGT 6 cut(s) 866, 1076, 1123, 1391, 1601, 1931
TaqI TCGA 5 cut(s) 210, 1443, 2148, 2154, 2311
TatI WGTACW 3 cut(s) 234, 554, 1856
TfiI GAWTC 4 cut(s) 1027, 1426, 1973, 2182
TscAI CASTG 5 cut(s) 1039, 1137, 1897, 1915, 1975
TseFI GTSAC 7 cut(s) 859, 1034, 1109, 1203, 1886, 1892, 2029
TseI GCWGC 3 cut(s) 491, 1731, 2171
Tsp45I GTSAC 7 cut(s) 859, 1034, 1109, 1203, 1886, 1892, 2029
TspRI CASTG 5 cut(s) 1039, 1137, 1897, 1915, 1975
Van91I CCANNNNNTGG 2 cut(s) 1278, 2104
VneI GTGCAC 1 cut(s) 1549
VpaK11BI GGWCC 1 cut(s) 2107
VspI ATTAAT 1 cut(s) 1238
XapI RAATTY 1 cut(s) 748
XceI RCATGY 4 cut(s) 517, 622, 1462, 1660
XmiI GTMKAC 1 cut(s) 440
XmnI GAANNNNTTC 3 cut(s) 711, 1026, 2012
XspI CTAG 5 cut(s) 224, 477, 1338, 1632, 1847
ZrmI AGTACT 1 cut(s) 1858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.